| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2589519 | 28 (0.770) | 6 (0.170) | 6/232 | 2.4 | 16.4% | coding (1925/3114 nt) | acrD | aminoglycoside/multidrug efflux system |
| ? | NC_000913 | = 2589539 | 34 (0.970) | coding (1945/3114 nt) | acrD | aminoglycoside/multidrug efflux system | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
CTACTTCACCCATGAAAAAGACAACATCATGTCGGTGTTTGCCACCGTTGGTTCTGGCCCTGGGGGTAACGGGCAAAACGTGGCGCGAATGTTTATCCGCCTGAAAGACTGGAGCGAACGCGACAGTAAGACCGGCACCTCGTTTGCCATTATCGAGCGTGCAACGAAGGCGTTTAACCAAATTAAAGAAGCTCGCGTTATCGCCAGCAGCCCGCCAGCAATTAGCGGTCTTGGTAGTTCTGCAGGTTTTGATATGGA > NC_000913/2589382‑2589639 | ctactTCACCCATGAAAAAGACAACATCATGTCGGTGTTTGCCACCGTTGGTTCTGGCCCTGGGGGTAACGGGCAAAACGTGGCGCGAATGTTTATCCGCCTGAAAGACTGGAGCGAACGCGACAGTAAGACCGGCACCTCGTTTGcc < 1:102411/148‑1 (MQ=255) atGTCGGTGTTTGCCACCGTTGGTTCTGGCCCTGGGGGTAACGGGCAAAACGTGGCGCGAATGTTTATCCGCCTGAAAGACTTGAGCGAACGCGACAGTAAGACCGGCACCTCGTTTGCCATTATCGAGCGTGCAACGAAGGCGTTTaa < 4:57036/149‑1 (MQ=255) gtgtTTGCCACCGTTGGTTCTGGCCCTGGGGGTAACGGGCAAAACGTGGCGCGAATGTTTATCCGCCTGAAAGACTGGAGCGAACGCGACAGTAAGACCGGCACCTCGTTTGCCATTATCGAGCGTGCAACGAAGGc < 6:137834/137‑1 (MQ=255) gtgtTTGCCACCGTTGGTTCTGGCCCTGGGGGTAACGGGCAAAACGTGGCGCGAATGTTTATCCGCCTGAAAGACTGGAGCGAACGCGACAGTAAGACCGGCACCTCGTTTGCCATTATCGAGCGTGCAACGAAGGc > 5:137834/1‑137 (MQ=255) cACCGTTGGTTCTGGCCCTGGGGGTAACGGGCAAAACGTGGCGCGAATGTTTATCCGCCTGAAAGACTGGAGCGAACGCGACAGTAAGACCGGCACCTCGTTTGCCATTATCGAGCGTGCAACGAAGGCGTTTAACCAAAt < 4:55544/141‑1 (MQ=255) cACCGTTGGTTCTGGCCCTGGGGGTAACGGGCAAAACGTGGCGCGAATGTTTATCCGCCTGAAAGACTGGAGCGAACGCGACAGTAAGACCGGCACCTCGTTTGCCATTATCGAGCGTGCAACGAAGGCGTTTAACCAAAt > 3:55544/1‑141 (MQ=255) gTTCTGGCCCTGGGGGTAACGGGCAAAACGTGGCGCGAATGTTTATCCGCCTGAAAGACTGGAGCGAACGCGACAGTAAGACCGGCACCTCGTTTGCCATTATCGAGCGTGCAACGAAGGCGTTTAACCAAATTAaag < 4:101512/138‑1 (MQ=255) gTTCTGGCCCTGGGGGTAACGGGCAAAACGTGGCGCGAATGTTTATCCGCCTGAAAGACTGGAGCGAACGCGACAGTAAGACCGGCACCTCGTTTGCCATTATCGAGCGTGCAACGAAGGCGTTTAACCAAATTAAAGAAGCTcggaag > 3:101512/1‑145 (MQ=255) tGGCCCTGGGGGTAACGGGCAAAACGTGGCGCGAATGTTTATCCGCCTGAAAGACTGGAGCGAACGCGACAGTAAGACCGGCACgctcgataatggcaaacgaggtgccggtcttactgtc < 8:154761‑M1/121‑38 (MQ=255) tGGCCCTGGGGGTAACGGGCAAAACGTGGCGCGAATGTTTATCCGCCTGAAAGACTGGAGCGAACGCGACAGTAAGACCGGCACgctcgataatggcaaacgaggtgccggtcttactgtc > 7:154761‑M1/1‑84 (MQ=255) ccTGGGGGTAACGGGCAAAACGTGGCGCGAATGTTTATCCGCCTGAAAGACTGGAGCGAACGCGACAGTAAGACCGGCACCTCGTTTGCCATTATCGAGCGTGCAACGAAGGCGtt < 3:13896/116‑1 (MQ=255) ccTGGGGGTAACGGGCAAAACGTGGCGCGAATGTTTATCCGCCTGAAAGACTGGAGCGAACGCGACAGTAAGACCGGCACCTCGTTTGCCATTATCGAGCGTGCAACGAAGGCGtt > 4:13896/1‑116 (MQ=255) gTAACGGGCAAAACGTGGCGCGAATGTTTATCCGCCTGAAAGACTGGAGCGAACGCGACAGTAAGACCGGCACgctcgataatggcaaacgaggtgccggtcttact > 4:5232‑M1/1‑73 (MQ=255) gTAACGGGCAAAACGTGGCGCGAATGTTTATCCGCCTGAAAGACTGGAGCGAACGCGACAGTAAGACCGGCACgctcgataatggcaaacgaggtgccggtcttact < 3:5232‑M1/107‑35 (MQ=255) tAACGGGCAAAACGTGGCGCGAATGTTTATCCGCCTGAAAGACTGGAGCGAACGCGACAGTAAGACCGGCACCTCGTTTGCCATTATCGAGCGTGCAACGAAGGCGTTTAACCAAATTaaa > 8:121755/1‑121 (MQ=255) tAACGGGCAAAACGTGGCGCGAATGTTTATCCGCCTGAAAGACTGGAGCGAACGCGACAGTAAGACCGGCACCTCGTTTGCCATTATCGAGCGTGCAACGAAGGCGTTTAACCAAATTaaa < 7:121755/121‑1 (MQ=255) gggCAAAACGTGGCGCGAATGTTTATCCGCCTGATAGACTGGAGCGAACGCGACAGTAAGACCGGCACgctcgataatggcaaacgaggtgc < 6:113594‑M1/92‑25 (MQ=255) gggCAAAACGTGGCGCGAATGTTTATCCGCCTGAAAGACTGGAGCGAACGCGACAGTAAGACCGGCACgctcgataatggcaaacgaggtgc > 5:113594‑M1/1‑68 (MQ=255) aaaaCGTGGCGCGAATGTTTATCCACCTGAAAGACTGGAGCGAACGCGACAGTAAGACCGGCACCTCGTTTGCCATTATCGAGCGTGCAACGAAGGCGTTTAACCAAATTAAAGAAGCTCGCGTTATCGCCAGCAGCCCGCCAGCAAt > 6:148886/1‑148 (MQ=255) tCCGCCTGAAAGACTGGAGCGAACGCGACAGTAAGACCGGCACCTCGTTTGCCATTATCGAGCGTGCAACGAAGGCGTTTAACCaaa < 8:147944/87‑1 (MQ=255) tCCGCCTGAAAGACTGGAGCGAACGCGACAGTAAGACCGGCACCTCGTTTGCCATTATCGAGCGTGCAACGAAGGCGTTTAACCaaa > 7:147944/1‑87 (MQ=255) gCCTGAAAGACTGGAGCGAACGCGACAGTAAGACCGGCACCTCGTTTGCCATTATCGAGCGTGCAACGAAGGCGTTTAACCAAATTAAAGAAGCTCGCGTTATCGCCAGCAGCCCGCCAGCAATTAGCGGTCTTGGTAGTTCTGc < 4:164317/145‑1 (MQ=255) gCCTGAAAGACTGGAGCGAACGCGACAGTAAGACCGGCACCTCGTTTGCCATTATCGAGCGTGCAACGAAGGCGTTTAACCAAATTAAAGAAGCTCGCGTTATCGCCAGCAGCCCGCCAGCAATTAGCGGTCTTGGTAGTTCTGc > 3:164317/1‑145 (MQ=255) cTGAAAGACTGGAGCGAACGCGACAGTAAGACCGGCACCTCGTTTGCCATTATCGAGCGTGCAACGAAGGCGTTTAACCAAATTAaag > 2:78896/1‑88 (MQ=255) cTGAAAGACTGGAGCGAACGCGACAGTAAGACCGGCACCTCGTTTGCCATTATCGAGCGTGCAACGAAGGCGTTTAACCAAATTAaag < 1:78896/88‑1 (MQ=255) gAAAGACTGGAGCGAACGCGACAGTAAGACCGGCACCTCGTTTGCCATTATCGAGCGTGCAACGACGGCGTTTAACCAAATTAAAGAAGCTCGCGTTATCGCCAGCAGCCCGCCAGCAATTAGCGGTCTTGGTAGTTCTGc < 8:122827/141‑1 (MQ=255) gAAAGACTGGAGCGAACGCGACAGTAAGACCGGCACCTCGTTTGCCATTATCGAGCGTGCAACGAAGGCGTTTAACCAAATTAAAGAAGCTCGCGTTATCGCCAGCAGCCCGCCAGCAATTAGCGGTCTTGGTAGTTCTGc > 7:122827/1‑141 (MQ=255) aaaGACTGGAGCGAACGCGACAGTAAGACCGGCACCTCGTTTGCCATTATCGAGCGTGCAACGAAGGCGTTTAACCAAATTAaagaa > 1:6992/1‑87 (MQ=255) aaaGACTGGAGCGAACGCGACAGTAAGACCGGCACCTCGTTTGCCATTATCGAGCGTGCAACGAAGGCGTTTAACCAAATTAaagaa < 2:6992/87‑1 (MQ=255) gAGCGAACGCGACAGTAAGACCGGCACCTCGTTTGCCATTATCGAGCGTGCAACGAAGGCGTTTAACCAAATTAAAGAAGCTCGCGTTATCGCCAGCAGCCCGCCAGCAATTAGCGGTCTTGGTAGTTCTGCAGGTTTTGATATGGa < 5:148886/147‑1 (MQ=255) aaCGCGACAGTAAGACCGGCACCTCGTTTGCCATTATCGAGCGTGCAACGAAGGCGTTTAACCAAATTAAAGAAGCTCGCGTTATCGCCAGCAGCCCGCCAGCAATTAGCGGTCTTGGTAGTTCTGCAGGTTTTGATATgg > 7:158785/1‑141 (MQ=255) aaCGCGACAGTAAGACCGGCACCTCGTTTGCCATTATCGAGCGTGCAACGAAGGCGTTTAACCAAATTAAAGAAGCTCGCGTTATCGCCAGCAGCCCGCCAGCAATTAGCGGGCTTGGTAGTTCTGCAGGTTTTGATATgg < 8:158785/141‑1 (MQ=255) gACAGTAAGACCGGCACCTCGTTTGCCATTATCGAGCgtgccggtcttactgtcgcgttcgctccagtctttcaggcggataaacattcgcgccacgttttgcccgttacccccagggcca > 7:154761‑M2/1‑37 (MQ=255) gACAGTAAGACCGGCACCTCGTTTGCCATTATCGAGCgtgccggtcttactgtcgcgttcgctccagtctttcaggcggataaacattcgcgccacgttttgcccgttacccccagggcca < 8:154761‑M2/121‑85 (MQ=255) aGTAAGACCGGCACCTCGTTTGCCATTATCGAGCgtgccggtcttactgtcgcgttcgctccagtctttcaggcggataaacattcgcgccacgttttgcccgttac > 4:5232‑M2/1‑34 (MQ=255) aGTAAGACCGGCACCTCGTTTGCCATTATCGAGCgtgccggtcttactgtcgcgttcgctccagtctttcaggcggataaacattcgcgccacgttttgcccgttac < 3:5232‑M2/107‑74 (MQ=255) gCACCTCGTTTGCCATTATCGAGCgtgccggtcttactgtcgcgttcgctccagtctttcaggcggataaacattcgcgccacgttttgccc > 5:113594‑M2/1‑24 (MQ=255) gCACCTCGTTTGCCATTATCGAGCgtgccggtcttactgtcgcgttcgctccagtctatcaggcggataaacattcgcgccacgttttgccc < 6:113594‑M2/92‑69 (MQ=255) ccTCGTTTGCCATTATCGAGCGTGCAACGAAGGCGTTTAACCAAATTAAAGAAGCTCGCGTTATCGCCAGCAGCCCGCCAGCAATTAGCGGTCTTGGTAGTTCTGCAGGttt > 6:95863/1‑112 (MQ=255) ccTCGTTTGCCATTATCGAGCGTGCAACGAAGGCGTTTAACCAAATTAAAGAAGCTCGCGTTATCGCCAGCAGCCCGCCAGCAATTAGCGGTCTTGGTAGTTCTGCAGGttt < 5:95863/112‑1 (MQ=255) | CTACTTCACCCATGAAAAAGACAACATCATGTCGGTGTTTGCCACCGTTGGTTCTGGCCCTGGGGGTAACGGGCAAAACGTGGCGCGAATGTTTATCCGCCTGAAAGACTGGAGCGAACGCGACAGTAAGACCGGCACCTCGTTTGCCATTATCGAGCGTGCAACGAAGGCGTTTAACCAAATTAAAGAAGCTCGCGTTATCGCCAGCAGCCCGCCAGCAATTAGCGGTCTTGGTAGTTCTGCAGGTTTTGATATGGA > NC_000913/2589382‑2589639 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |