| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 882,263 | 1 | . | A | 21.1% | 45.1 / 13.2 | 19 | coding (472/759 nt) | deoR | deoxyribose‑5‑phosphate‑inducible deoxyribose operon transcriptional repressor; repressor of nupG and tsx |
| Reads supporting (aligned to +/- strand): ref base . (7/8); new base A (2/2); total (9/10) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
CCAGCACATGCTTTTGCGCCATCGACATGGCCCAGTGTTTTACCGGCAACTCTTCAAGATTAAAACAGGTAGCGCCTTTACTGACATGCACGCCCGCCGCAGAATAAAAAGCGATATCCGGGCAAAAATTATTCAGCGTTTGCTG‑AAAATCGATGGGTTTGAAAATGGCGTTGCTGGCGTGAAATTCACCACCGCAAAGAAACGCGCGGCAATGGGGTTTCTCTTTCAGCGCCAGAAAGGTATTTAGCGAATAACAAACGGCGGTAAAAGGGATTTC > NC_000913/882119‑882395 | ccAGCACATGCTTTTGCGCCATCGACATGGCCCAGTGTTTTACCGGCAACTCTTCAAGATTAAAACAGGTAGCGCCTTTACTGACATGCACGCCCGCCGCAGAATAAAAAGCGATATCCGGGCAAAAATTATTCAGCGTTTGCTG‑aaaa > 5:166656/1‑149 (MQ=255) ttGCGCCATCGACATGGCCCAGTGTTTTACCGGCAACTCTTCAAGATTAAAACAGGTAGCGCCTTTACTGACATGCACGCCCGCCGCAGAATAAAAAGCGATATCCGGGCAAAAATTATTCAGCGTTTGCTG‑AAAATCGATGGGTTTg > 3:84850/1‑148 (MQ=255) gACATGGCCCAGTGTTTTACCGGCTACTCTTGTATATTATAACAGGTAGCGCCTTTACTGACATGCACGCCCGCCGCAGAATAAAAAGCGATATCCGGGCAAAAATTATTCAGCGTTTGCTT‑AAAATCGATTGGTTTGAAAATGGCGt < 4:84850/148‑1 (MQ=255) ggCCCAGTGTTTTACCGGCAACTCTTCAAGATTAAAACAGGTAGCGCCTTTACTGACATGCACGCCCGCCGCAGAATAAAAAGCGATATCCGGGCAAAAATTATTCAGCGTTTGCTG‑AAAATCGATGGGTTTGAAAATGGCGTTGCTgg > 5:76893/1‑149 (MQ=255) cAGTTTTTTACCGGCATCTCTTCAAGATTAAATCAGGTAGCGCCTTTACTGACATGCACGCCCGCAGCAGAATAAAAAGCGATATCCGGGCAAAAATTATTCAGCGTTTGCTG‑AAAATCGATGGGTTTGAAAATGGCGTTGCTGGc < 6:159534/146‑1 (MQ=255) cAGTGTTTTACAGGCAACTCTTCAAGATTAAAACAGGTAGCGCCTTTACTGACATGCACGCCCGCCGCAGAATAAAAAGCGATATCCGGGCAAAAATTATTCAGCGTTTGCTG‑AAAATAGATGGGTTTGAAAATGGCGTTCCTGGc > 5:159534/1‑146 (MQ=255) cGGCAACTCTTCAAGATTAAAACAGGTAGCGCCTTTACTGACATGCACGCCCGCCGCAGAATAAAAAGCGATATCCGGGCAAAAATTATTCAGCGTTTGCTG‑AAAATCGATGGGTTTGAAAATGGCGTTGCTGGCGTGAAATTcaccac > 5:14777/1‑149 (MQ=255) aGATTAAAACAGGTAGCGCCTTTACTGACATGCACGCCCGCCGCAGAATAAAAAGCGATATCCGGGCAAAAATTATTCAGCGTTTGCTG‑AAAATCGATGGGTTTGAAAATGGCGt > 8:79023/1‑115 (MQ=255) aGATTAAAACAGGTAGCGCCTTTACTGACATGCACGCCCGCCGCAGAATAAAAAGCGATATCCGGGCAAAAATTATTCAGCGTTTGCTG‑AAAATCGATGGGTTTGAAAATGGCGt < 7:79023/115‑1 (MQ=255) ttAAAACAGGTAGCGCCTTTACTGACATGCACGCCCGCCGCAGAATAAAAAGCGATATCCGGGCAAAAATTATTCAGCGTTTGCTG‑AAAATCGATGGGTTTGAAAATGGCGTTGCTGGCGt > 4:24505/1‑121 (MQ=255) ttAAAACAGGTAGCGCCTTTACTGACATGCACGCCCGCCGCAGAATAAAAAGCGATATCCGGGCAAAAATTATTCAGCGTTTGCTG‑AAAATCGATGGGTTTGAAAATGGCGTTGCTGGCGt < 3:24505/121‑1 (MQ=255) ccTTTACTGACATGCACGCCCGCCGCAGAATAAAAAGCGATATCCGGGCAAAAATTATTCAGCGTTTGCTG‑AAAATCGATGGGTTTGAAAATGGCGTTGCTGGCGTGAAATTCACCACCGCAAAGAACCGCGCGGCAATGGGGTTtct > 8:131581/1‑148 (MQ=255) ccTTTACTGACATGCACGCCCGCCGCAGAATAAAAAGCGATATCCGGGCAAAAATTATTCAGCGTTTGCTG‑AAAATCGATGGGTTTGAAAATGGCGTTGCTGGCGTGAAATTCACCACCGCAAAGAAACGCGCGGCAATGGGGTTtct < 7:131581/148‑1 (MQ=255) cTTTACTGACATGCACGCCCGCCGCAGAATAAAAAGCGATATCCGGGCAAAAATTATTCAGCGTTTGCTG‑AAAATCGATGGGTTTGAAAATGGCGTTGCTGGCGTGAAATTCACCACCGCAAAGAAACGCGCGGCAATGGGGTTTctct < 6:166656/149‑1 (MQ=255) aCATGCACGCCCGCCGCAGAATAAAAAGCGATATCCGGGCAAAAATTATTCAGCGTTTGCTG‑AAAATCGATGGGTTTGAAAATGGCGTTGCTGGCGTGAAATTCACCACCGCAAAGAAACGCGCGGCAATGGGGTTTCTCTTTCAgcgc < 6:76893/149‑1 (MQ=255) ttattCAGCGTTTGCTG‑AAAATCGATGGGTTTGAAAATGGCGTTGCTGGCGTGAAATTCACCACCGCAAAGAAACGCGCGGCAATGGGGTTTCTCTTTCAGCGCCAGAAAGGTATTTAGCGAATAACAAACGGCGGTAAAAGGGATTTc < 6:14777/149‑1 (MQ=255) aGCGTTTGCTGAAAAATCGATGGGTTTGAAAATGGCGTTGCTGGCGTGAAATTcacc < 4:80848/57‑1 (MQ=39) aGCGTTTGCTGAAAAATCGATGGGTTTGAAAATGGCGTTGCTGGCGTGAAATTcacc > 3:83570/1‑57 (MQ=39) aGCGTTTGCTGAAAAATCGATGGGTTTGAAAATGGCGTTGCTGGCGTGAAATTcacc > 3:80848/1‑57 (MQ=39) aGCGTTTGCTGAAAAATCGATGGGGTTGAAAATGGCGTTGCTGGCGTGAAATTcacc < 4:83570/57‑1 (MQ=255) | CCAGCACATGCTTTTGCGCCATCGACATGGCCCAGTGTTTTACCGGCAACTCTTCAAGATTAAAACAGGTAGCGCCTTTACTGACATGCACGCCCGCCGCAGAATAAAAAGCGATATCCGGGCAAAAATTATTCAGCGTTTGCTG‑AAAATCGATGGGTTTGAAAATGGCGTTGCTGGCGTGAAATTCACCACCGCAAAGAAACGCGCGGCAATGGGGTTTCTCTTTCAGCGCCAGAAAGGTATTTAGCGAATAACAAACGGCGGTAAAAGGGATTTC > NC_000913/882119‑882395 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |