New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1999548	40 (1.230)	8 (0.260)	6/238	3.0	16.8%	intergenic (‑68/+37)	dcyD/fliY	D‑cysteine desulfhydrase, PLP‑dependent/cystine transporter subunit
	?	NC_000913	= 1999563	42 (1.380)					intergenic (‑83/+22)	dcyD/fliY	D‑cysteine desulfhydrase, PLP‑dependent/cystine transporter subunit
Rejected: Frequency below/above cutoff threshold.

AGATATTCGAGCGGCGTTGGCGCGCCGATAAACTCCAGCCGTGGAAAACGGGTTAAATTATGCAGTGGCATAACAGCCTCCGATGTGTGTTGTTGTGATTTTCTTATTATGCACGCTGAAAACGCGTAAATAAAAAAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/1999410‑1999548 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaaaaggGCGCTTTCACTAGCG‑CCTTTTTTATTTACGCGTTTTCAGCGTGCATAATAAGAAAATCACAACAACACACATCGGAGGCTGTTATGCCACTGCATAATTTAACCCGTTTTCCAC  <  NC_000913/1999563‑1999450                                                                                                                                                                                                                                                                AGATATTCGAGCGGCGTTGGCGCGCCGATAAACTCCAGCCGTGGAAAACGGGTTAAATTATGCAGTGGCATAACAGCCTCCGAGGTGTGTTGTTGTGATTTTCTTATTATGCACGCTGAAAACGCGTAAATAAAAAAGGGCGCTTTCcc                                                                                                           >  7:122212/1‑147                          CGATAAACTCCAGCCGTGGAAAACGGGTTAAATTATGCAGTGGCATAACAGCCTCCGATGTGTGTTGTTGTGATTTTCTTATTATGCACGCTGAAAACGCGTAAATAAAAAAGGGCGCTTTCACTAGCG‑CCTTTTTTATTTAC                                                                                       >  8:12564/1‑143                          CGATAAACTCCAGCCGTGGAAAACGGGTTAAATTATGCAGTGGCATAACAGCCTCCGATGTGTGTTGTTGTGATTTTCTTATTATGCACGCTGAAAACGCGTAAATAAAAAAGGGCGCTTTCACTAGCG‑CCTTTTTTATTTAC                                                                                       >  8:14714/1‑143                          CGATAAACTCCAGCCGTGGAAAACGGGTTAAATTATGCAGTGGCATAACAGCCTCCGATGTGTGGTGTTGTGATTTTCTTATTATGCACGCTGAAAACGCGTAAATAAAAAAGGGCGCTTTCACTAGCG‑CCTTTTTTATTTAC                                                                                       <  7:12564/143‑1                          CGATAAACTCCAGCCGTGGAAAACGGGTTAAATTATGCAGTGGCATAACAGCCTCCGATGTGTGGTGTTGGGATTTTCTTATTATGCACGCTGAAAACGCGTAAATAAAAAAGGGCGCTTTCACTAGCG‑CCTTTTTTATTTAC                                                                                       <  7:14714/143‑1                                                     TTAAATTATGCAGTGGCATAACAGCCTCCGATGTGTGTTGTTGTGATTTTCTTATTATGCACGCTGAAAACGCGTAAATAAAAAAGGGCGCTTTCACTAGCG‑CCTTTTTTATTTACGC                                                                                     <  5:157622/118‑1                                                     TTAAATTATGCAGTGGCATAACAGCCTCCGATGTGTGTTGTTGTGATTTTCTTATTATGCACGCTGAAAACGCGTAAATAAAAAAGGGCGCTTTCACTAGCG‑CCTTTTTTATTTACGC                                                                                     >  6:157622/1‑118                                                                                                         TATTATGCACGCTGAAAACGCGTAAATAAAAAA‑GGCGCTAGTGAAAGCGCCCTTTTTTATTTACGCGTTTTCAGCGTGCATAATAAGAAAATCACAACAACACACCTCGGAGGCTGTTATGCCACTGCATAATTTAACCCGTTTTCCAC  >  8:122212/1‑149                                                                                                                                      AAAAGGGCGCTTTCACTAGCG‑CCTTTTTTATTTACGCGTTTTCAGCGTGCATAATAAGAAAATCACAACAACACACATCGGAGGCTGTTATGC                             <  5:120830/93‑1                                                                                                                                      AAAAGGGCGCTTTCACTAGCG‑CCTTTTTTATTTACGCGTTTTCAGCGTGCATAATAAGAAAATCACAACAACACACATCGGAGGCTGTTATGC                             >  6:120830/1‑93                                                                                                                                                                                                                                                                AGATATTCGAGCGGCGTTGGCGCGCCGATAAACTCCAGCCGTGGAAAACGGGTTAAATTATGCAGTGGCATAACAGCCTCCGATGTGTGTTGTTGTGATTTTCTTATTATGCACGCTGAAAACGCGTAAATAAAAAAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/1999410‑1999548 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaaaaggGCGCTTTCACTAGCG‑CCTTTTTTATTTACGCGTTTTCAGCGTGCATAATAAGAAAATCACAACAACACACATCGGAGGCTGTTATGCCACTGCATAATTTAACCCGTTTTCCAC  <  NC_000913/1999563‑1999450

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.