New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1378468	12 (0.480)	4 (0.170)	4/258	2.7	31.4%	coding (585/2268 nt)	ycjT	putative family 65 glycosyl hydrolase
	?	NC_000913	= 1378524	6 (0.250)					coding (641/2268 nt)	ycjT	putative family 65 glycosyl hydrolase

TTTCAACAGGCATTGACGCCACGCAAACCAATCACGGTCGCCAACATCTCGACGAAACCCAGGTGCGGGTGTTTGGTCAGCATCTGATGCAGGGGAGCTACACCACCCAGGATGGACGCAGTGATGTGGCCATCAGCTGTTGCTGTAAGGTGAGCGGTGATGTGCAGCAATGCTATACCGCCAAAGAGCGCCGTTTACTGCAACATACCAGTGCGCAGCTTCATGCAGGCGAGACAATGACGTTGCAAAAACTGGTGTGGATCGACTGGCGGGATG  >  NC_000913/1378326‑1378601                                                                                                                                               |                                                                                                                                      tttCAACAGGCATTGACGCCACGCAAACCAATCACGGTCGCCAACATCTCGACGAAACCCAGGTGCGGGTGTTTGGTCAGCATCTGATGCAGGGGAGCTACACCACCCAGGATGGACGCAGTGATGTGGCCATCAGCTGTTGCTGTAAg                                                                                                                                 <  3:19652/149‑1 (MQ=255)  ttCTACAGGCATTGACGCCACGCAAACCAATCTCGGTCGCCATCATCTCGACGAAACCCAGGTGCGGGTGTTTGGTCAGCATCTGATGCAGGGGAGCTACACCTCCCAGGATGGACGCAGTGATGTGGCCATCAGCTGTTGCTGTAAg                                                                                                                                 <  4:119371/148‑1 (MQ=255)      aCAGGCATTGACGCCACGCAAACCAATCACGGTCGCCAACATCTCGACGAAACCCAGGTGCGGGTGTTTGGTCAGCATCTGATGCAGGGGAGCTACACCACCCAGGATGGACGCAGTGATGTGGCCATCAGCTGTTGCTGTAAGGTGAg                                                                                                                            <  5:65955/149‑1 (MQ=255)                               aTCACGGTCGCCAACATCTCGACGAAACCCAGGTGCGGGTGTTTGGTCAGCATCTGATGCAGGGGAGCTACACCACCCAGGATGGACGCAGTGATGTGGCCATCAGCTGTTGCTGTAAGGTGAGCGGTGATGTGCAACAATGCTATAcc                                                                                                   <  4:147853/149‑1 (MQ=255)                                          cAACATCTCGACGAAACCCAGGTGCGGGTGTTTGGTCAGCATCTGATGCAGGGGAGCTACACCACCCAGGATGGACGCAGTGATGTGGCCATCAGCTGTTGCTGTAAGGTGAGCGGTGATGTGCAGCAATg                                                                                                          <  4:63002/131‑1 (MQ=255)                                          cAACATCTCGACGAAACCCAGGTGCGGGTGTTTGGTCAGCATCTGATGCAGGGGAGCTACACCACCCAGGATGGACGCAGTGATGTGGCCATCAGCTGTTGCTGTAAGGTGAGCGGTGATGTGCAGCAATg                                                                                                          >  3:63002/1‑131 (MQ=255)                                             cATCTCGACGAAACCCAGGTGCGGGTGTTTGGTCAGCATCTGATGCAGGGGAGCTACACCACCCAGGATGGACGCAGTGATGTGGCCATCAGCTGTTGCTGTAAGGTGAGCGGTGATGTGCAGCAATGCTATACCGCCAAAGAGCGCCg                                                                                     >  6:3944/1‑149 (MQ=255)                                                     cgaAACCCAGGTGCGGGTGTTTGGTCAGCATCTGATGCAGGGGAGCTACACCACCCAGGATGGACGCAGTGATGTGGCCATCAGCTGTTGCTGTAAGGTGAGCGGTGATGTGCAGCAATGCTATACCGCCAAAGAGCGCCGTTTAccg                                                                              >  3:97616/1‑146 (MQ=255)                                                            cAGGTGCGGGTGTTTGGTCAGCATCTGATGCAGGGGAGCTACACCACCCAGGATGGACGCAGTGATGTTGCCATCAGCTGTTGCTGTAAGGTGAGCGGTGATGTGCAGCAATGCTATACCGCCAAAGAGCGCCGTTTACTGCAACATAc                                                                      <  5:50327/149‑1 (MQ=255)                                                                   gggTGTTTGGTCAGCATCTGATGCAGGGGAGCTACACCACCCAGGATGGACGCAGTGATGTGGCCATCAGCTGTTGCagtaaacggcgctctttggcggtatagcattgctgcacatcaccgctcaccttacagcaacagctga                                                                    >  4:118502‑M1/1‑77 (MQ=255)                                                                   gggTGTTTGGTCAGCATCTGATGCAGGGGAGCTACACCACCCAGGATGGACGCAGTGATGTGGCCATCAGCTGTTGCagtaaacggcgctctttggcggtatagcattgctgcacatcaccgctcaccttacagcaacagctga                                                                    <  3:118502‑M1/144‑68 (MQ=255)                                                                        tttGGTCAGCATCTGATGCAGGGGAGCTACACCACCCAGGATGGACGCAGTGATGTGGCCATCAGCTGTTGCTGTAAGGTGAGCGGTGATGTGCAGCAATGCTATACCGCCAAAGAGCGCCGTTTACTGCAACATACCAGTGCGCAGCt                                                          <  5:3944/149‑1 (MQ=255)                                                                                                  cTACACCACCCAGGATGGACGCAGTGATGTGGCCATCAGCTGTTGCTGTAAGGTGAGCGGTGATGTGCAGCAATGCTATACCGCCAAAGAGCGCCGTTTACTGCAACATACCAGTGCGCAGCTTCATGCAGGCGAGACAATGACGTTg                                 >  3:104383/1‑148 (MQ=255)                                                                                                        caccCAGGATGGACGCAGTGATGTGGCCATCAGCTGTTGCagtaaacggcgctctttggcggtatagcattgctgcacatcaccgctcaccttacagcaacagctg                                                                     >  1:10936‑M1/1‑40 (MQ=255)                                                                                                        caccCAGGATGGACGCAGTGATGTGGCCATCAGCTGTTGCagtaaacggcgctctttggcggtatagcattgctgcacatcaccgctcaccttacagcaacagctg                                                                     <  2:10936‑M1/106‑67 (MQ=255)                                                                                                            cAGGATGGACGCAGTGATGTGGCCATCAGCTGTTGCTGTAAGGTGAGCGGTGATGTGCAGCAATGCTATACCGCCAAAGAGCGCCGTTTACCGCAACATACCAGTGCGCAGCTTCATGCAGGCGAGACAATGACGTTGCAAAAACTGgt                      <  4:97616/149‑1 (MQ=255)                                                                                                                                     tCAGCTGTTGCTGTAAGGTGAGCGGTGATGTGCAGCAATGCTATACCGCCAAAGAGCGCCGTTTACTgcaacagctgatggccacatcactgcgtccatcctgggtggtgtagctcccctgcatcagatgctgaccaaacaccc  >  4:118502‑M2/1‑67 (MQ=255)                                                                                                                                     tCAGCTGTTGCTGTAAGGTGAGCGGTGATGTGCAGCAATGCTATACCGCCAAAGAGCGCCGTTTACTgcaacagctgatggccacatcactgcgtccatcctgggtggtgtagctcccctgcatcagatgctgaccaaacaccc  <  3:118502‑M2/144‑78 (MQ=255)                                                                                                                                      cAGCTGTTGCTGTAAGGTGAGCGGTGATGTGCAGCAATGCTATACCGCCAAAGAGCGCCGTTTACTgcaacagctgatggccacatcactgcgtccatcctgggtg                                       <  2:10936‑M2/106‑41 (MQ=255)                                                                                                                                      cAGCTGTTGCTGTAAGGTGAGCGGTGATGTGCAGCAATGCTATACCGCCAAAGAGCGCCGTTTACTgcaacagctgatggccacatcactgcgtccatcctgggtg                                       >  1:10936‑M2/1‑66 (MQ=255)                                                                                                                                               |                                                                                                                                      TTTCAACAGGCATTGACGCCACGCAAACCAATCACGGTCGCCAACATCTCGACGAAACCCAGGTGCGGGTGTTTGGTCAGCATCTGATGCAGGGGAGCTACACCACCCAGGATGGACGCAGTGATGTGGCCATCAGCTGTTGCTGTAAGGTGAGCGGTGATGTGCAGCAATGCTATACCGCCAAAGAGCGCCGTTTACTGCAACATACCAGTGCGCAGCTTCATGCAGGCGAGACAATGACGTTGCAAAAACTGGTGTGGATCGACTGGCGGGATG  >  NC_000913/1378326‑1378601

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.