New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 4480959	NA (NA)	6 (0.290)	6/222	1.7	NA	intergenic (+33/+23)	yjgN/valS	DUF898 family inner membrane protein/valyl‑tRNA synthetase
	?	NC_000913	= 4480935	NA (NA)					intergenic (+9/+47)	yjgN/valS	DUF898 family inner membrane protein/valyl‑tRNA synthetase

TGATTGACTGGCAGGCAAAAAATACGTATTTGCTGGGCGATTTGGATGACCTTCCTTTAATCAATAAAGAAGAACAACCAGATAAAGGCTTCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCGGCCTTCGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGCCTGCTGTTCAATCAGTTTCGCTTTCGCTTCCGCATAGCCTTCCAGCTTCTCACGCTCTTTCGCGATGACCGCTTCCGG  >  NC_000913/4480787‑4481080                                                                                                                                                     |                                                                                                                                                  tgatTGACTGGCAGGCAAAAAATACGTATTTGCTGGGCGATTTGGATGACCTTCCTTTAATCAATAAAGAAGAACAACCAGATAAAGGCTTCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATaaaa                                                                                                                                                   <  1:32579/149‑1 (MQ=255)             aggcaAAAAATACGTATTTGCTGGGCGATTTGGATGACCTTCCTTTAATCAATAAAGAAGAACAACCAGATAAAGGCTTCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCA                                                                                                                                       >  5:75107‑M1/1‑149 (MQ=255)                             tttGCTGGGCGATTTGGATGACCTTCCTTTAATCAATAAAGAAGAACAACCAGATAAAGGCTTCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCGGCCTTttt                                                                                                                        >  4:28180‑M1/1‑145 (MQ=255)                                   gggCGATTTGGATGACCTTCCTTTAATCAATAAAGAAGAACAACCAGATAAAGGCTTCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCGGCCTTCGTTTtcat                                                                                                                  >  4:70912/1‑148 (MQ=255)                                           tGGATGACCTTCCTTTAATCAATAAAGAAGAACAACCAGATAAAGGCTTCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGCCGTAGCATGCTCCGGCCTTCGTTTTCATCACTgtgt                                                                                                          <  6:118030/148‑1 (MQ=255)                                            ggATGACCTTCCTTTAATCAATAAAGAAGAACAACCAGATAAAGGCTTCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCGGCCTTCGTTTTCATCACTGTGtt                                                                                                         <  6:75107/148‑1 (MQ=255)                                             gATGACCTTCCTTTAATCAATAAAGAAGAACAACCAGATAAAGGCTTCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGTCCGGAGCATGCTCCGGCCTTttttatctcttacagaaatg                                                                                                       >  5:42792‑M1/1‑129 (MQ=255)                                               tGACCTTCCTTTAATCAATAAAGAAGAACAACCAGATAAAGGCTTCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGC                                                                                                                                              <  2:10495‑M1/108‑1 (MQ=255)                                                 aCCTTCCTTTAATCAATAAAGAAGAACAACCAGATAAAGGCTTCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAaaggccggagcatgctccggccttttttatctcttacagaaatggta                                                                                                    >  3:28180‑M2/1‑101 (MQ=255)                                                    ttccttTAATCAATAAAGAAGAACAACCAGATAAAGGCTTCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCGGCCTTCGTTTTCATCACTGTGTTTTGATTa                                                                                                  >  2:79893/1‑147 (MQ=255)                                                               aaTAAAGAAGAACAACCAGATAAAGGCTTCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATATCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCGGCCTTCGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGAt                                                                                      <  2:94469/148‑1 (MQ=255)                                                                 tAAAGAAGAACAACCAGATAAAGGCTTCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCGGCCTTCGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATaa                                                                                    >  6:86540/1‑148 (MQ=255)                                                                    agaagaACAACCAGATAAAGGCTTCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCGGCCTTc                                                                                                                          >  4:112475/1‑107 (MQ=255)                                                                    agaagaACAACCAGATAAAGGCTTCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCGGCCTTc                                                                                                                          <  3:112475/107‑1 (MQ=255)                                                                    agaagaACAACCAGATAAAGGCTTCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCGGCCTTCGTTTTCATCACTGTGtttt                                                                                                       <  4:54468/126‑1 (MQ=255)                                                                    agaagaACAACCAGATAAAGGCTTCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCGGCCTTCGTTTTCATCACTGTGtttt                                                                                                       >  3:54468/1‑126 (MQ=255)                                                                            aacCAGATAAAGGCTTCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAaaggccggagcatgctccggccttttttatctcttacagaaatggtaaag                                                                                                 >  3:42708‑M2/1‑74 (MQ=255)                                                                            aacCAGATAAAGGCTTCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCGGCCTTttttatctcttacagaaatggtaaag                                                                                                 >  4:42708‑M1/1‑98 (MQ=255)                                                                                   tAAAGGCTTCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCGGCCTTCGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGCCTGCTGTTCAATCa                                                                  <  3:70912/148‑1 (MQ=255)                                                                                      aGGCTTCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCGGCCTTttttatctcttacagaaatggtaaagaaggcataactccccgtgaaatactggctaagaag                                                              >  6:42792‑M1/1‑88 (MQ=255)                                                                                         cttcttAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAaaggccggagcatgctccggccttttttatctcttacagaaatggtaaagaaggcataactccccgtgaaatactggctaagaagcct                                                           >  6:42792‑M2/1‑61 (MQ=255)                                                                                                               ggAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCGGCCTTCGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGCCTGCTGTTCAATCAGTTTCGCTTTCGCTTCCGCATAGCCTTcc                                     <  1:79893/149‑1 (MQ=255)                                                                                                                            cttTACCATTTCTGTAAGAGATAAAAaaggccggagcatgctccggccttttttatctcttacagaaatggtaaagaaggcataactccccgtgaaatactggctaagaagcctttatctggtt                                                 >  4:42708‑M2/1‑26 (MQ=255)                                                                                                                            cttTACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCGGCCTTttttatctcttacagaaatggtaaagaaggcataactccccgtgaaatactggctaagaagcctttatctggtt                                                 >  3:42708‑M1/1‑50 (MQ=255)                                                                                                                               tACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCGGCCTTttttatctcttacagaaatggtaaagaaggcataactccccgtgaaatactggctaagaagcctttatctggttgttcttctttattgattaaaggaaggt                      >  3:28180‑M1/1‑47 (MQ=255)                                                                                                                                  cATTTCTGTAAGAGATAAAAaaggccggagcatgctccggacttttttatctcttacagaaatggtaaagaaggcataactccccgtgaaatactggctaagaagcctttatctggttgttcttctttattgattaaaggaaggtcatc                  >  5:42792‑M2/1‑20 (MQ=255)                                                                                                                                             gagaTAAAAAAGGCCGGAGCATGCTCCGGCCTTCGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGCCTGCTGTTCAATCAGTTTCGCTTTCGCTTCCGCATAGCCTTCCa                                    <  3:151961/120‑1 (MQ=255)                                                                                                                                             gagaTAAAAAAGGCCGGAGCATGCTCCGGCCTTCGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGCCTGCTGTTCAATCAGTTTCGCTTTCGCTTCCGCATAGCCTTCCa                                    >  4:151961/1‑120 (MQ=255)                                                                                                                                                 tAAAAAAGGCCGGAGCATGCTCCGGCCTTCGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGCCTGCTGTTCAATCAGTTTCGCTTTCGCTTCCGCATAGCCTTCCAGCTTCTCACGCTCTTTCGCGATGACCGCTTCCg   >  1:23588/1‑149 (MQ=255)                                                                                                                                                   aaaaaggccggagcatgctccggccttttttatctcttacagaaatggtaaagaaggcataactccccgtgaaatactggctaagaagcctttatctggttgttcttctttattgattaaaggaaggtcatccaaatcgcccagcaaa  >  4:28180‑M2/1‑3 (MQ=255)                                                                                                                                                     |                                                                                                                                                  TGATTGACTGGCAGGCAAAAAATACGTATTTGCTGGGCGATTTGGATGACCTTCCTTTAATCAATAAAGAAGAACAACCAGATAAAGGCTTCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCGGCCTTCGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGCCTGCTGTTCAATCAGTTTCGCTTTCGCTTCCGCATAGCCTTCCAGCTTCTCACGCTCTTTCGCGATGACCGCTTCCGG  >  NC_000913/4480787‑4481080

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.