| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 2729475 = | 14 (0.430) | 4 (0.130) | 4/224 | 3.6 | 26.8% | intergenic (‑31/+141) | gltW/rrsG | tRNA‑Glu/16S ribosomal RNA of rrnG operon |
| ? | NC_000913 | = 4168363 | 9 (0.300) | intergenic (+163/‑9) | rrsB/gltT | 16S ribosomal RNA of rrnB operon/tRNA‑Glu | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
GATTGTCTGATGAAAAGTGAATAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/2729582‑2729475‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acacgaaaatTGCTTATCACGCGTTGCGTGATATTTTCGTGTAGGGTGAGCTTTC‑ATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTTTTCACTTT < NC_000913/4168363‑4168247 GATTGTCTGATGAAAAGTGAATAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATTGCTTATCACGCGTTGCGTGATATTTTCGTGTAGG > 6:143907/1‑143GATTGTCTGATGAAAAGTGAATAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATTGCTTATCACGCGTTGCGTGATATTTTCGTGTAGG < 5:143907/143‑1 AGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACA < 6:14174/79‑1 AGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACA > 5:14174/1‑79 TGAAAGCTCACCCTACACGAAAATTGCTTATCACGCGTTGCGTGATATTTTCGTG > 6:34030/1‑55 TGAAAGCTCACCCTACACGAAAATTGCTTATCACGCGTTGCGTGATATTTTCGTG < 5:34030/55‑1 ACGAAAATTGCTTATCACGCGTTGCGTGATATTTTCGTGTAGGGTGAGCTTTCTATTAATga < 1:18221/62‑3 ACGAAAATTGCTTATCACGCGTTGCGTGATATTTTCGTGTAGGGTGAGCTTTCTATTAATga > 2:18221/1‑60 ACGAAAATTGCTTATCACGCGTTGCGTGATATTTTCGTGTAGGGTGAGCTTTC‑ATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTTTTCACTTT > 3:59266/1‑125 ACGAAAATTGCTTATCACGCGTTGCGTGATATTTTCGTGTAGGGTGAGCTTTC‑ATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTTTTCACTTT < 4:59266/125‑1 GAAAATTGCTTATCACGCGTTGCGTGATATTTTCGTGTAGGGTGAGCTTTC‑ATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAAGGCGTTTACGCGTTGggag > 6:94819/1‑112 GAAAATTGCTTATCACGCGTTGCGTGATATTTTCGTGTAGGGTGAGCTTTC‑ATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAAGGCGTTTACGCGTTGggag < 5:94819/116‑5 GAAAATTGCTTATCACGCGTTGCGTGATATTTTCGTGTAGGGTGAGCTTTC‑ATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGC < 4:32577/113‑1 GAAAATTGCTTATCACGCGTTGCGTGATATTTTCGTGTAGGGTGAGCTTTC‑ATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGC > 3:32577/1‑113 GAAAATTGCTTATCACGCGTTGCGTGATATTTTCGTGTAGGGTGAGCTTTC‑ATTAAT > 2:187535/1‑57 GAAAATTGCTTATCACGCGTTGCGTGATATTTTCGTGTAGGGTGAGCTTTC‑ATTAAT < 1:187535/57‑1 AAATTGCTTATCACGCGTTGCGTGATATTTTCGTGTAGGGTGAGCTTTC‑ATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTTTTCACTT > 5:54957/1‑120 AAATTGCTTATCACGCGTTGCGTGATATTTTCGTGTAGGGTGAGCTTTC‑ATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTTTTCACTT < 6:54957/120‑1 GATTGTCTGATGAAAAGTGAATAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/2729582‑2729475‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acacgaaaatTGCTTATCACGCGTTGCGTGATATTTTCGTGTAGGGTGAGCTTTC‑ATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTTTTCACTTT < NC_000913/4168363‑4168247 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |