New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 227039	41 (0.900)	11 (0.250)	4/270	6.2	21.9%	noncoding (1281/2904 nt)	rrlH	23S ribosomal RNA of rrnH operon
	?	NC_000913	2727897 =	NA (NA)					noncoding (1288/2904 nt)	rrlG	23S ribosomal RNA of rrnG operon
Rejected: Coverage evenness skew score above cutoff.

CGGGGCTAAACCATGCACCGAAGCTGCGGCAGCGACGCTTATGCGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTACTGTGAGGTATGCTG‑GAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/226893‑227039 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agcgggCTTTTCACCCGCTTTATCGTTACTTATGTCAGCATTCGCACTTCTGATACCTCCAGCATGCCTCACAGCACACCTTCGCAGGCTTACAGAACGCTCCCCTACCCAACAACGCATAAGCGTCGCTGCCGCAGCTTCGGTGCAT  >  NC_000913/2727897‑2728038                                                                                                                                                                                                                                                                                                    CGGGGCTAAACCATGCACCGAAGCTGCGGCAGCGACGCTTATGCGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTACTGTGAGGTATGCTG‑CAGGTATCAGAAGTGCGAATGCTGACATACGTAACGATAAAG                                                                                                                                                    >  2:268335/1‑143  GGGGCTAAACCATGCACCGAAGCTGCGGCAGCGACGCTTATGCGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTACTGTGAGGTGTGCTG‑GAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGC                                                                                                                                                   >  2:788910/1‑143           CCATGCACCGAAGCTGCGGCAGCGACGCTTATGCGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTACTGTGAGGTATGCTG‑GAGCTATCAGAAGTGCGAATGCTGACATAAGGCAGGATAAAGCGGGCgaaac                                                                                                                                          >  2:172146/1‑138                  CCGAAGCTGCGGCAGCCACGCTTATGCGTTGTTGGGTAGGGGAGCGTTCGGTAAGCCTGTGAAGGTGTACTGTGAGGTATGCTG‑GAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGCTTTTCACCCGCT                                                                                                                                   <  1:124707/143‑1                     AAGCTGCGGCAGCGACGCTTATGCGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGCGAAGGTGTGCTGTGAGGCATGCTG‑GAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGCTTTTCACCCGCTTTA                                                                                                                                <  1:803146/143‑1                        CTGCGGCAGGGCCGCTTATGCGTTGTTGGGGAGGGGAGCGTTCTGTAAGCCTGCGAAGGTGTGCTGTGAGGCATGCTG‑GAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGCTTTTCACCCGCTTTATCG                                                                                                                             <  1:348602/143‑1                           CGGCAGCGACGCTTATGCGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTACTGTGAGGTATGCTG‑GAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGCTTTTCACCCGCTTTATCGTTA                                                                                                                          <  1:750048/143‑1                                     cacTATGTGTGGTTGGGTAGGGGAGCGTTCTGGAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTG‑GAGGTATCAGAAGGGCGAATGCTGACATAAGTAACGATAAAGCGGGCTTTTCACCCGCTTTATCGTTACTTATGTCAG                                                                                                                <  1:669848/140‑1                                     GCTTATGCGTTGTTGGGTAGGGGAGGGTTCTGTAAGCCTGCGAAGGTGTGCTGTGAGGCATGCTG‑GAGGTATCAGAAGTGCGAATGCTCACATAAGTAACGATAAAGCGGGCTTTTCACCCGCTTTATCGTTACTTATGTCAG                                                                                                                <  1:390401/143‑1                                         ATGCGTTGTTGGGTAGGGGAGCGTGCTGTAAGCCTGTGAAGCGGTACTATGTGAT‑TGCGGTTGGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGCTTTTCACCCGCTTTATCGTTACTTATGTCAGCATT                                                                                                            <  1:380478/143‑1                                                                TTCTGTAAGCCTGCGAAGGTGTGCTGTGAGGCATGCTG‑GAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGCTTTTCACCCGCTTTAT                                                                                                                               <  1:197705/101‑1                                                                TTCTGTAAGCCTGCGAAGGTGTGCTGTGAGGCATGCTG‑GAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGCTTTTCACCCGCTTTAT                                                                                                                               >  2:197705/1‑101                                                                                                                                          GATAAAGCGGGCTTTTCACCCGCTTTATCGTTACTTATGTCAGCATTCGCACTTCTGATACCTCCAGCATGCCTCACAGCACACCTTCGCAGGCTTACAGAACGCTCCCCTACCCAACAACGCATACGCGTCACTGCCGCAGC            >  2:666438/1‑143                                                                                                                                                GCGGGCTTTTCACCCGCTTTATCGTTGCTTATGTCAGCATTCGCACTTCTGATGCCTCCAGCATGCCTCACAGCACACCTACGCAGGCTTACAGAACGCTCCCCTACCCAACAACGCATAAGCGTCGCTGCCGCAGCTTCGGT      <  2:799304/143‑1                                                                                                                                                GCGGGCTTTTCACCCGCTTTATCGTTACTTATGTCAGCATTCGCACTTCTGATACCTCCAGCATGCCTCACAGCACACCTTCGCAGGCTTACAGAACGCTCCCCTACCCAACAACGCATAAGCGTCGCTGCCGCAGCTTCGGT      <  1:805146/143‑1                                                                                                                                                GCGGGCGTTTCTCCCGCGTTATCGTTACTTATGTCAGCATTCGCACTTCTGATACCTCCAGCATGCCTCACAGCACACCTTCGCAGGCTTACAGAACGCTCCCCTACCCAACAACGCATAAGCGTCGCTGCCGCAGCTTCGGT      <  2:355276/143‑1                                                                                                                                                  GGGCTTTTCACCCGCTTTATCGTTACTTATGTCAGCATTCGCACTTCTGATACCTCCAGCATGCCTCACAGCACACCTTCGCAGGCTTACAGAACGCTCCCCTACCCAACAACGCATAAGCGGCGCTGCCGCAGCTTCGGTGC    >  1:538942/1‑143                                                                                                                                                  GGGCTTTGCACCCGCTTTGGCGGTACGTATGTCAGCATTCGCACTTCTGATACCTCCAGCATGCCTCACAGCACACCTTCGCAGGCTTACAGAACGCTCCCCTACCCAACAACGCATAAGCGTCGCTGCCGCAGCTTCGGTGC    <  1:84508/143‑1                                                                                                                                                    GCTTTTCACCCGCTTTATCGTTACTTATGTCAGCATTCGCACTTCTGATACCTCCAGCATGCCTCACAGCACACCTTCGCAGGCTTACAGAACGCTCCCCTACCCAACAACGCATAAGCGTCGCTGCCGCAGCTTCGGTGCAT  <  1:454386/143‑1                                                                                                                                                                                                                                                                                                    CGGGGCTAAACCATGCACCGAAGCTGCGGCAGCGACGCTTATGCGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTACTGTGAGGTATGCTG‑GAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/226893‑227039 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agcgggCTTTTCACCCGCTTTATCGTTACTTATGTCAGCATTCGCACTTCTGATACCTCCAGCATGCCTCACAGCACACCTTCGCAGGCTTACAGAACGCTCCCCTACCCAACAACGCATAAGCGTCGCTGCCGCAGCTTCGGTGCAT  >  NC_000913/2727897‑2728038

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.