| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 925857 = | 56 (1.230) | 3 (0.070) +ACGGGCTTTTT |
3/260 | 6.6 | 5.5% | intergenic (+317/+27) | clpA/serW | ATPase and specificity subunit of ClpA‑ClpP ATP‑dependent serine protease, chaperone activity/tRNA‑Ser |
| ? | NC_000913 | 1097195 = | NA (NA) | intergenic (+366/+370) | ycdU/serX | putative inner membrane protein/tRNA‑Ser | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
TGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTC‑TTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTC > NC_000913/1097059‑1097296 | tGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGAAAACAAAGCCCGTACTTTCGTACGAGCCCTTC‑TTTaaac > 2:373459/1‑142 (MQ=25) cGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCAAGTTGTAGACCACCGGTCGGGGCTTCTCATCCCCCCGGCGCGTGCAATAAAAGAAAACAAACCCCGTACCGCCGTACGAGCTATTC‑CTTCAAAACGACGGTGAg > 2:133907/1‑143 (MQ=11) gCTCACTGCGTTCACGGTCTGCCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTC‑TTTAAATATGGCGGTGAgg < 1:659468/143‑1 (MQ=25) tGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTC‑TTTAAATATGGCGGTGAGGGGGGGa > 1:364888/1‑143 (MQ=35) tGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTC‑TTTAAATATGGCGGTGAGGGGGGGa > 1:634139/1‑143 (MQ=35) cACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGT‑TGTTCCATTCACGGAAAAAAAGGCCGGTCTTTCGGTCCGCCTCTTCTTTTAAATAGGCCGGTGGGGGGGGGtttaatt > 1:38685/1‑139 (MQ=2) cGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTC‑TTTAAATATGGCGGTGAgggggg < 2:787089/133‑1 (MQ=35) cGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTC‑TTTAAATATGGCGGTGAgggggg > 1:787089/1‑133 (MQ=37) tGTCGCCAGTTGTCGACCCCCGCTCAAGGCCTCCCTTCCCCCCGAGATGTTCACCAAACGAAAAGATCTCGCGGGCCGCCGTACGAGCTCTAC‑ATTAAATATGGCGGTGACGGCGGGATTGACTCGCGTCGCTCACCCTGCgg > 2:56711/1‑143 (MQ=255) ccAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTC‑TTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCCGc > 1:32543/1‑143 (MQ=25) ttGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTC‑TTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGc > 2:706439/1‑143 (MQ=35) tCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTC‑TTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCa < 1:706439/143‑1 (MQ=35) cccaCCCCCCGTCGGGGCTCCCCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGGACTTTCGTACGAGCTCTTC‑TTTAAACATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCa < 1:629282/140‑1 (MQ=11) gACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTC‑TTTAAATATGGCGGTGa > 2:62757/1‑96 (MQ=37) gACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTC‑TTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACt > 1:797564/1‑143 (MQ=35) cccGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTC‑TTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGt > 1:134903/1‑143 (MQ=32) cccGGTCGGGGCGTCGCAGCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTC‑TTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGt < 1:6684/143‑1 (MQ=12) ggtgtctcATGCCCCCGCTGTCTGCAATACCCGAAAAAAACGCCCGTACTTTCGTACGAGCTCTTC‑TTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCt < 1:761396/139‑1 (MQ=11) gCTTCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTC‑TTTACATATGGCGGTGACGGGGGGATTGACTCTCTTCGCTCGCCCCGCGGCCAGCCCCCTCACTGGGTTCACGGCCTg > 1:386935/1‑143 (MQ=11) cTTCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTC‑TTTAAATATGGCGGTGAGGGGGGGATTGAc > 1:327689/1‑94 (MQ=34) cTTCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTC‑TTTAAATATGGCGGTGAGGGGGGGATTGAc < 2:327689/94‑1 (MQ=34) ttCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTC‑TTTAAATATGGCGGTGAGGGGGGGATTGACtcgcttcg < 2:443014/101‑1 (MQ=33) ttCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTC‑TTTAAATATGGCGGTGAGGGGGGGATTGACtcgcttcg > 1:443014/1‑101 (MQ=33) tcATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTC‑ttt > 1:20122/1‑63 (MQ=37) ccccccGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTC‑TTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTgg < 1:453501/143‑1 (MQ=32) cccGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTC‑TTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTg > 1:277544/1‑143 (MQ=32) gtgtgtGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTC‑TTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCCGTCGc > 2:24806/1‑143 (MQ=17) tgtgtgCAATACACGAAAAAAAAGCCCGTACTTTAGTACGAGCTCGTC‑TTTAAATATGGCGGAGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGcc < 1:418915/143‑1 (MQ=12) tgCAATACACGAAAAGAAAGCCCGTACTTTCGTACGGGCTCTTC‑TTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGtt > 2:751905/1‑143 (MQ=12) tgCAATACACGAAAAAAAAGCCCGTACTTTCGTGCGAGCTCTTC‑TTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGtt < 2:134903/143‑1 (MQ=17) cAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTC‑TTTa < 1:692469/46‑1 (MQ=40) cAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTC‑TTTCAATATGCCAGTCAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGt < 1:564225/143‑1 (MQ=255) aatttaggAAAACAAAGCCCGTCCTTTCGTACGAGCTCTTC‑TTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTc < 2:745060/136‑1 (MQ=0) | TGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTC‑TTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTC > NC_000913/1097059‑1097296 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |