Predicted mutation
evidence seq id position mutation annotation gene description
JC JC NC_000913 1,293,032 IS1 (–) +8 bp intergenic (‑110/‑488) hns ← / → tdk global DNA‑binding transcriptional dual regulator H‑NS/thymidine kinase/deoxyuridine kinase

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 1050545NA (NA)50 (1.200) 43/282 0.0 100% noncoding (768/768 nt) IS1 repeat region
?NC_000913 = 1293039 0 (0.000)intergenic (‑117/‑488) hns/tdk global DNA‑binding transcriptional dual regulator H‑NS/thymidine kinase/deoxyuridine kinase
* ? NC_000913 1293032 =0 (0.000)52 (1.250) 41/282 0.1 100% intergenic (‑110/‑495) hns/tdk global DNA‑binding transcriptional dual regulator H‑NS/thymidine kinase/deoxyuridine kinase
?NC_000913 = 1979270 NA (NA)noncoding (1/768 nt) IS1 repeat region

Only 100 of 122 total aligned reads displayed.

AGCGGTATAACCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGAAATCTCCCTTTCCTCATACCGCTTGCACTATATACTGCGGGTAGGAAAGGCGCGCAGAGGGAAATATAAGATTGTTAACTATCCC  >  NC_000913/1050403‑1050686
                                                                                                                                               |                                                                                                                                             
aGCGGTATAACCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAAAACGTTGGAGTGATTAcc                                                                                                                                               >  2:2252/1‑143 (MQ=12)
  cGGTATAGCCTGACGCTTGGGCAGCTCCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAATGTCATCGGGCATTATCTGTACATAAAACACTATCAATAAGTTGGAGTCATTACCcg                                                                                                                                             <  2:681496‑M1/143‑3 (MQ=255)
        aaCCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCCTCGGGCATTATCTGAACATACAACACTATCGATAAGTTGGCGTCGTTACCgaatagtt                                                                                                                                       <  2:227013‑M2/143‑9 (MQ=255)
          ccTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTCTCAATAAGTTGGAGTCATTACCcggcacaaac                                                                                                                                     >  1:4631‑M1/1‑133 (MQ=255)
           cTGAATCTGAGGCAGCACCTGGGACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGGCATTACCcgggacaaaat                                                                                                                                    >  2:519600‑M1/1‑132 (MQ=255)
           cTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGCACATAAAACACTATCAATAAGTCGGAGTCATTACCcggcacaaaac                                                                                                                                    >  2:311053‑M1/1‑132 (MQ=255)
           cTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCcggcacaaaat                                                                                                                                    >  1:330327‑M1/1‑132 (MQ=255)
           cTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCcggcaacaaat                                                                                                                                    >  2:353671‑M1/1‑132 (MQ=255)
            tGAATCTGAGGCAGCACCTGGCACGGGTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAATCACTATCAATAAGTTGGAGTCATTACCcggcacaaaata                                                                                                                                   >  2:726922‑M1/1‑131 (MQ=255)
              gcgctggGGCAGCAGCTGGAGCGGCTGGGACGGAAGCCGCTGTCGGTCTCAAAAGCGGTGGAGCTGCAGGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCcggcacaaaataaa                                                                                                                                 <  2:416400‑M1/140‑15 (MQ=255)
                tCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACCAAGTCATCGGGCATTATCTGAACATAAAACACTAGCAATCAGTTGGAGTCATTACCGACAATACGTACGCtt                                                                                                                               >  2:41506/1‑143 (MQ=255)
                 ccggggCAGCACGTGGCACGGCTGGGACGGAAGCCGCTGTCGTTCGCAAAAGCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTAGCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTg                                                                                                                              <  1:747919/139‑1 (MQ=14)
                   gAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTgag                                                                                                                            <  2:613189/143‑1 (MQ=255)
                      gcagcaCCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCcggcacaaaataaagcacaatg                                                                                                                         >  2:515834‑M1/1‑121 (MQ=255)
                       cagcaCCTGGCAGGGCTGTGACGGAAGTCGCTGTCGTTCTCAAAGTCGGTGGAGCTGCATGACAAAGTCATCGGGCAGTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCa                                                                                                                        <  1:388253/143‑1 (MQ=255)
                        agcaCCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCcggcacaacataaagaacaattta                                                                                                                       >  2:431458‑M1/1‑119 (MQ=255)
                             cTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCgaatatttcacagtcagacttgctgcatt                                                                                                                  <  1:591948‑M2/143‑30 (MQ=255)
                                gCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTGTCTGAACATAAAACATTATCAATAAGTTGGAGTCATTATCcggcacaaaatcaagaacaattttgaattcct                                                                                                               >  2:324336‑M1/1‑111 (MQ=255)
                                gCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCcggcacaaaataaagaacaattttgaattcct                                                                                                               >  1:10412‑M1/1‑111 (MQ=255)
                                 cACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCcggcacaaaataaagaacaattttgaattcctt                                                                                                              <  1:659898‑M1/143‑34 (MQ=255)
                                  aCGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCcggcacaaaataaagaacaattttgaattcctta                                                                                                             >  2:110017‑M1/1‑109 (MQ=255)
                                    ggCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCgaatatttcacagtcaaacttgctgcattaaaaaaa                                                                                                           >  1:713158‑M2/1‑107 (MQ=255)
                                    ggCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACtt                                                                                                           >  2:335886/1‑143 (MQ=255)
                                    ggCCGGGATGGAAGTCGCTGTCGTTCTCAAAATCCGTCGAACTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACGCTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACtt                                                                                                           <  2:559305/143‑1 (MQ=17)
                                     gCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACttt                                                                                                          >  2:469388/1‑143 (MQ=255)
                                       tGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGa                                                                                                        <  1:104615/143‑1 (MQ=255)
                                          gACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCgaatatttcacagtcaaacttgctgcattaaaaaaacataaa                                                                                                     >  2:698536‑M2/1‑101 (MQ=255)
                                          gACGGAAGGCGCTGTCGTTCTAAAAAGCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCgaatatttcacagtcaaacttgctgcattaaaaaaacataaa                                                                                                     >  2:697683‑M2/1‑101 (MQ=255)
                                            cGGAAGGCGCTGTCGTTCTCAAACTCGGTGGAGCTTCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCcggcacaaaataaagaacaattttgaattccttacattcctggc                                                                                                   <  2:238198‑M1/143‑45 (MQ=255)
                                             ggAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCcggcacaaaataaagaacaattttgaattccttacattcctggct                                                                                                  >  1:361061‑M1/1‑98 (MQ=255)
                                                aGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCcggcacaaaataaagaacaattttgaattccttacattcctggctatt                                                                                               >  1:61017‑M1/1‑95 (MQ=255)
                                                aGTCGCGGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTAGCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACAt                                                                                               <  2:152316/143‑1 (MQ=255)
                                                 gTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATGGGGCATTATGTGAACATAAAACACTATCAAGAAGTTGGAGTCATTACCgaatatttcacagtcaaacttgctgcattaaaaaaacataaaagctagg                                                                                              <  1:392822‑M2/143‑50 (MQ=255)
                                                 gTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCgcatatttcacggtcaagcttgctgcattaaaagaccataaaagctggg                                                                                              <  1:201535‑M2/143‑50 (MQ=255)
                                                      tGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCcggcacaaaataaagaacaattttgaattccttacattcctggctattgcacaa                                                                                         >  1:320057‑M1/1‑89 (MQ=255)
                                                      tGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAGCATCCTtgt                                                                                         >  1:153724/1‑143 (MQ=255)
                                                      tGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTtgt                                                                                         <  2:292338/143‑1 (MQ=255)
                                                           ttCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGAATTGTCTACTTTCAGGATAACATACTTGTCAAAt                                                                                    >  2:74913/1‑143 (MQ=18)
                                                             ctcAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCgaatatttcacagtcaaacttgctgcattaaaaaaacataaaagctaggaacgacgcgatt                                                                                  >  1:616004‑M2/1‑82 (MQ=255)
                                                             cgcAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATATAACACTATCAATAAGCGGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGAAAtct                                                                                  <  1:20869/141‑1 (MQ=255)
                                                              tcAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCcggcacaaaataaagaacaattttgaattccttacattcctggctattgcacaactgaattt                                                                                 >  1:14414‑M1/1‑81 (MQ=255)
                                                               cAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCcggcacaaaataaagaacaattttgaattccttacattcctggctattgcacaactgaattta                                                                                >  1:690769‑M1/1‑80 (MQ=255)
                                                               cAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGAAATCTcc                                                                                <  2:323613/143‑1 (MQ=255)
                                                                 aaaTCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCcggcacaaaataacgaacaattttgaattccttacattcctggctattgcacaactgaatttaag                                                                              <  2:18329‑M1/143‑66 (MQ=255)
                                                                   aTCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGAAAAGTCTACTTTTAGTATAACATCCTTGTGAAATCTCCCttt                                                                            <  1:522688/143‑1 (MQ=255)
                                                                    tCGGTGGAGCTGCCTGACAAAGTCATCGTGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGAAATCTCCCTTTc                                                                           <  2:146404/143‑1 (MQ=255)
                                                                    tCGGTGGAGCTGCATGACAAAGGCATCGGGCATTATCTGCACATAAAACACTATCAATAAGTTGGAGTCATTACCcggcacaaaataaagaacaattttgaattccttacattcctggctattgcacaactgaatttaaggct                                                                           <  1:136663‑M1/143‑69 (MQ=255)
                                                                        tGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCgaatatttcacagtcaaacttgctgcattaaaaaaacataaaagctaggaacgacgcgattatatgcgttat                                                                       <  1:710013‑M2/143‑73 (MQ=255)
                                                                         ggAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGAAATCTCCCTTTCCTCAt                                                                      >  2:8282/1‑143 (MQ=255)
                                                                          gAGCTGCATGACACAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCcggcacaaaataaagaacaattttgaattccttacattcctggctattgcacaactgaatttaaggctctatta                                                                     <  1:120630‑M1/143‑75 (MQ=255)
                                                                          gAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCcggcacaaaataaagaacaattttgaattccttacattcctggctattgcacaactgaatttaaggctctatta                                                                     <  1:536393‑M1/143‑75 (MQ=255)
                                                                           aGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCGATAAGTTGGAGTCATTACCcggcacaaaataaagaacacttttgaattccttacattcctggctattgcacaactgaatttaaggctctattat                                                                    <  2:727051‑M1/143‑76 (MQ=255)
                                                                            gCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCcggcacaaaataaagaacaattttgaattccttacattcctggctattgcacaactgcgtgtaaggctctcttatt                                                                   >  1:465629‑M1/1‑67 (MQ=255)
                                                                                cATGACAAAGGCATCGTGCTTTATCTGAACATAAAACACTATCAATAAGTTTGAGGCATTACCGACAATACATACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGAAATCTCCCTTTCCTCATACCGCtt                                                               <  2:424054/143‑1 (MQ=37)
                                                                                    aCAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATGAGTTGGAGTCATTACCcggcacaacataaagaacaattttgaattccttacattcctggctattgcacaactgaatttaatgctctattcttacctcaac                                                           >  1:749048‑M1/1‑59 (MQ=255)
                                                                                    aCAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCcggcacaaaataaagaacaattttgaattccttacattcctggctattgcacaactgaatttaaggctctattattacctcaac                                                           >  2:476635‑M1/1‑59 (MQ=255)
                                                                                    aCAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTCCGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGAAATCTCCCTTTCCTCATACCGCTTGCAc                                                           >  2:676799/1‑143 (MQ=255)
                                                                                     cAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCgaatatttcacagtcaaacttgctgcattaaaaaaacataaaagctaggaacgacgcgattatatgcgtcatgatcgcctgcgtg                                                          <  2:61937‑M2/143‑86 (MQ=255)
                                                                                     cAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGAAATCTCCCTTTCCTCATACCGCTTGCACt                                                          <  1:458030/143‑1 (MQ=255)
                                                                                     cAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGAAATCTCCCTTTCCTCATACCGCTTGCACt                                                          >  2:674712/1‑143 (MQ=255)
                                                                                      aaaGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCcggcacaaaataaagaacaattttgaattccttacattcctggctattgcacaactgaatttaaggctctattattacctcaacaa                                                         <  2:462400‑M1/143‑87 (MQ=255)
                                                                                       aaGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGAAATCTCCCTTTCCTCATACCGCTTGCACtat                                                        <  1:335886/143‑1 (MQ=255)
                                                                                        aGTCATCGGGCATTATCTGAACATAACACCACTAGATGCAGTTTGAGTCATTACCcggcacaaaataaagaacaattttgaattccttacattcctggctattgcacaactgaatttaaggctctattattacctcaacaaac                                                       <  2:156176‑M1/143‑89 (MQ=255)
                                                                                            aTCGGGCATCATCTGCACATAAACCACGAGCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGCGATCAGGATTGTCTACTGTGCGTATAACATCCTTGTGAAATCTCCCTTTCCTCATACCGCTTGCACTATATACt                                                   <  1:163110/143‑1 (MQ=38)
                                                                                             tCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCcggcacaaaataaagaacaattttgaattccttacattcctgg                                                                                                    >  2:272079‑M1/1‑50 (MQ=255)
                                                                                             tCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCcggcacaaaataaagaacaattttgaattccttacattcctgg                                                                                                    <  1:272079‑M1/93‑44 (MQ=255)
                                                                                             tCGGGCATTATCGGAACATAAAACACTATCAATAAGTTGGAGTCATTACCcggcacaaaataaagaacaattttgaattccttacattcctggctattgcacaactgaatttaaggctctattattacctcaacaaaccaccc                                                  <  2:31813‑M1/143‑94 (MQ=255)
                                                                                              cGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCcggcacaaaataaagaacaattttgaattccttacattcctggctattgcacaactgaatttaaggctctattattacctcaacaaaccacccc                                                 >  1:661267‑M1/1‑49 (MQ=255)
                                                                                                 gCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCcggcacaaaataaagaacaattttgaattccttacattcctggctattgcacaactgaatttaaggctctattattacctcaccaaaccaccccaat                                              >  2:616968‑M1/1‑46 (MQ=255)
                                                                                                 gCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGAAATCTCCCTTTCCTCATACCGCTTGCACTATATACTGCggg                                              >  1:546635/1‑143 (MQ=255)
                                                                                                    ttATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCcggcacaaaataaagaacaattttgaattccttacattcctggctattgcacaactgaatttaaggctctattattacctcagcaaaccaccccaatata                                           >  1:129927‑M1/1‑43 (MQ=255)
                                                                                                    ttATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGAAATCTCCCTTTCCTCATACCGCTTGCACTATATACTGCGGGTAg                                           >  1:257717/1‑143 (MQ=255)
                                                                                                      aTCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCgaatatttcacagtcaaacttgctgcattaaaaaaacataaaagctaggaacgacgcgattatatgcgtcatgatcgcctgcgtgcagttgcacaatttcgc                                         >  1:487194‑M2/1‑41 (MQ=255)
                                                                                                      aTCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGAAATCTCCCTTTCCTCATACCGCTTGCACTATATACTGCGGGTAGGa                                         >  1:6753/1‑143 (MQ=255)
                                                                                                      aTCTGAACATAAAACACTATCAAAAAGTTGGAGTCATTACCgaatatttcacagtcaaacttgatgcattaaaaaaacataaaagctaggaacgacgcgattatatgcgtcatgatcgcctgcgtgcagttgcacaatttcgc                                         >  2:646470‑M2/1‑41 (MQ=255)
                                                                                                       tCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCcggcacaaaataaagaacaattttgaattccttacattcctggctattgcacaactgaatttaaggctctattattacctcaacaaaccaccccaatataagt                                        <  1:65976‑M1/143‑104 (MQ=255)
                                                                                                       tCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGAAATCTCCCTTTCCTCATACCGCTTGCACTATATACTGCGGGTAGGaa                                        >  1:38763/1‑143 (MQ=255)
                                                                                                        cTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCcggcacaaaataaagaacaattttgaattccttacattcctggctattgcacaactgaatttaaggctctattattacctcaacaaaccaccccaatataagtt                                       >  1:93655‑M1/1‑39 (MQ=255)
                                                                                                         tGAACATAAAACACTATCAATAAGTTGGAGTCATTACCcggcacaaaataaagaacaattttgaattccttacattcctggctattgcacaactgaatttaaggctctattattacctcaacaaaccaccccaatataagttt                                      >  1:603866‑M1/1‑38 (MQ=255)
                                                                                                         tGAACATAAAACACAATCAAGAAGTTGGAGTCATTACCgaatatttcacagtcaaactagctgcattaaaaaaacataaaagctaggaacgacgcgattatatgcgtcatgatcgcctgcgtgcagttgcacaatttcgcgga                                      >  2:392635‑M2/1‑38 (MQ=255)
                                                                                                               tAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGAAATCTCCCTTTCCTCATACCGCTTGCACTATATACTGCGGGTAGGAAAGgcgcgc                                >  2:114394/1‑143 (MQ=255)
                                                                                                               tAAAACACGATCAATAAGTTGGAGCCATTACCGACAAGACGTACGCTTGAGATCAGGATTGTCTGCTTTGAGTATAACATCCTTGTGAAATCTCCCTTTCCTCATACCGCCTGCACTAGATACTGCGGGTAGGCAAGgcgcgc                                >  2:48769/1‑143 (MQ=255)
                                                                                                                aaaaCACTATCAATAAGTTGGAGTCATTACCgaatatttcacagtcaaacttgctgcattaaaaaaacataaaagctaggaacgacgcgattatatgcgtcatgatcgcctgcgtgcagttgcacaatttcgcggacaacagg                               <  1:719756‑M2/143‑113 (MQ=255)
                                                                                                                aaaaCACTATCAATAAGTTGGAGTCATTACCcggcacaaaataaagaacaattttgaattccttacattcctggctattgcacaactgaatttaaggctctattattacctcaacaaaccacctcaatataagtttgagatta                               >  1:59057‑M1/1‑31 (MQ=255)
                                                                                                                aaaaCACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATACGGATTGTCTACTTTGAGTACAACAACCCTGTGAAATCTCCCTTTCCTCATACCGCTTGCACTATATACTGCGGGTAGGAAAGGCGCGCa                               >  1:176036/1‑143 (MQ=39)
                                                                                                                    acacTATCAAGAAGTTGGAGTCATTCCCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGAAATCTCCCTTTCCTCATACCGCTTGCACTATATACTGCGGGTAGGAAAGGCGCGCagag                            <  2:417157/143‑1 (MQ=255)
                                                                                                                       cTATCAATAAGTTGGAGTCATTACCcggcacaaaataaagaacaattttgaattccttacattcctggctattgcacaactgaatttaaggctctattattacctcaacaaaccaccccaatataagtttgagattactacaa                         <  2:190114‑M1/143‑119 (MQ=255)
                                                                                                                       cTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTAGTGAAATCTCCCTTTCCTCATACCGCTTGAACTATATACTGCGGGTAGGAAAGGCGCGCAGAAGGa                         >  2:252949/1‑143 (MQ=255)
                                                                                                                        tATCAATGAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGAAATCTCCCTTTCCTCATACCGCTTGCACTATATACTGCGGGTAGGAAAGGCGCGCAGAGGGaa                        <  2:455001/143‑1 (MQ=255)
                                                                                                                        tATCAATAAGTTGGAGTCATTACCgaatatttcacagtcaaacttgctgcattaaaaaaacataacagctcggaacgacgcgattatatgcgtcatgatcgcctgcgtgcagttgcacaatttcgcggacaccaggtccatag                        <  1:445031‑M2/143‑120 (MQ=255)
                                                                                                                         aTCAATAAGTTGGAGTCATTACCcggcacaaaataaagaacaattttgaattccttacattcctggctattgcacaactgaatttaaggctctattattacctcaacaaaccaccccaatataagtttgagattactacaatg                       <  1:159549‑M1/143‑121 (MQ=255)
                                                                                                                              tAAGTTGGCGTCAGTACCGACAAGAAGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGAAATCTCCCTTTCCTCATACCGCTTGCACTATATACTGCGGGTAGGAAAGGCGCGCAGAGGGAAATATaa                  <  2:622618/143‑1 (MQ=255)
                                                                                                                              tAAGTTGGAGTTATTATCgaatattttacagttaaatttgctgcattaaaaaaacataaaagctaggaacgatgtgattatatgcgtcatgatcgcctgggtgcagttgcacaatttcgcggacaacaggtcaatagcgatct                  >  1:465378‑M2/1‑18 (MQ=255)
                                                                                                                               aaGTTGGAGTCATTACCcggcacaaaataaagaacaattttgaattccttacattcctggctattgcacaactgaatttaaggctctattattacctcaacaaaccaccccaatataagtttgagattactacaatgagcgaa                 <  2:586174‑M1/143‑127 (MQ=255)
                                                                                                                                 gTTGGAGTCATTACCcggcacaaaataaagaacaattttgaattccttacattcctggctattgcacaactgaatttaaggctctattattacctcaacaaaccaccccaatataagtttgagattactacaatgagcgaagc               <  1:555672‑M1/143‑129 (MQ=255)
                                                                                                                                  ttGGAGTCATTACCcggcacaaaatgaagaacaattttgaattccttacattcctggctattgcacaactgaatttaaggctctattattacctcaacaaaccaccccaatgtacggttgcggggacttcaagcagcgaagcc              >  2:444506‑M1/1‑14 (MQ=255)
                                                                                                                                   tGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGAAATCTCCCTTTCCTCATACCGCTTGCACTATATACTGCGGGTAGGAAAGGCGCGCAGAGGGAAATATAAGATTg             >  1:206463/1‑143 (MQ=255)
                                                                                                                                     gAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGAAATCTCCCTTTCCTCATACCGCTTGCACTATATACTGCGGGTAGGAAAGGCGCGCAGAGGGAAATATAAGATTGtt           >  1:582973/1‑143 (MQ=255)
                                                                                                                                           ttACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGAAATCTCCCTTTCCTCATACCGCTTGCACTATATACTGCGGGTAGGAAAGGCGCGCAGAGGGAAATATAAGATTGTTAACTAt     >  1:84646/1‑143 (MQ=255)
                                                                                                                                              ccGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGAAATCTCCCTTTCCTCATCCCGCTTGCACTATATACTGCGGGCAGGCAAGGCGCGCCGAGGGCACTATAAGCGTGTTAGATATcgc  >  2:438418/1‑141 (MQ=255)
                                                                                                                                               |                                                                                                                                             
AGCGGTATAACCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGAAATCTCCCTTTCCTCATACCGCTTGCACTATATACTGCGGGTAGGAAAGGCGCGCAGAGGGAAATATAAGATTGTTAACTATCCC  >  NC_000913/1050403‑1050686

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.