New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1207790 =	2 (0.050)	31 (0.840)	28/250	0.3	92.8%	coding (290/630 nt)	stfP	e14 prophage; uncharacterized protein
	?	NC_000913	1209619 =	3 (0.080)					pseudogene (1/501 nt)	stfE	pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related

GGTGGAGGCATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGAT‑GGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCAT  >  NC_000913/1207650‑1207927                                                                                                                                              |                                                                                                                                          tgcacaggtcagcgcattacgttgtagatctgtgttctggtcatttgttgatacgcgtacatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcatagacgtt                                                                                                                                          <  1:147089‑M1/2‑1 (MQ=255) ggtggAGGCATCCGGTGCCAGCCGGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGAT‑GGCACTGTGCAAACGGCTCTCGAAAACCTTG                                                                                                                                         <  2:26606‑M1/143‑1 (MQ=255)    ggAGGCATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGAT‑GGCACTGTGCAAACGGCTCTCGAAAACCTTGGTT                                                                                                                                      <  1:607028‑M1/143‑1 (MQ=255)      agttcagcgcattacgttgtagatctgtgttctggtcatttgttgatacgcgtacatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaccgttggctt                                                                                                                                     <  2:643476‑M1/7‑4 (MQ=255)       gggatccGGGGCCGGCCTGGAGGATGTTCGGCACGGCCAGTTACTTACCGCGCTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGAT‑GGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGG                                                                                                                                   <  2:361333‑M1/140‑1 (MQ=255)        tgcagcgcattacgttgtagatctgtgttctggtcatttgttgatacgcgtacatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTgg                                                                                                                                   >  2:195157‑M1/135‑143 (MQ=255)          cagcgcagtgcgttgtagatccgtgccctggtcatttgtcgatacgcgtacatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGga                                                                                                                                 >  1:43784‑M1/133‑143 (MQ=255)             cgcattacgttgtagatctgtgttctggtcatttgttgatacgcgtacatagccaataagcatgttaaatccccctggtaaaagcaggtatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGaa                                                                                                                              <  2:455676‑M1/14‑1 (MQ=255)             cgcattacgttgtagatctgtgttctggtcatttgttgatacgcgtacatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGaa                                                                                                                              >  1:723400‑M1/130‑143 (MQ=255)              gcactacgttgtagctctgtgttctggtcatttgttgatacgcgtacatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaactTTGGTTTGGGAGAAg                                                                                                                             >  2:551331‑M1/129‑143 (MQ=255)                    aGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGAT‑GGCACTGTGCAAACGGCTCTCGAAAACCTTGGTCTGGGAGAAGGctctgc                                                                                                                      >  1:618191‑M1/1‑137 (MQ=255)                     gttgtagatctgtgttctggtcatttgttgatacgcgtacatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCaaa                                                                                                                      <  1:654380‑M1/22‑1 (MQ=255)                      ttgttgagctgggttctggtcatttgttgatacgcgtacatagccaataagcgtgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCaaaa                                                                                                                     >  2:531716‑M1/121‑143 (MQ=255)                             tctgtgttctggtcatttgttgatacgcgtacatagccaataagcatgttaaatctccatggtaaaagcaggaatgatgccatttgcttgttatttcttcatcttcataaacgTTGGTTTGGGAGAAGGAGCAAACCTCAATg                                                                                                              <  2:310386‑M1/30‑1 (MQ=255)                             tctgtgttctggtcatttgttgatacgcgtacatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGGGAAGGCGCACAACTCAata                                                                                                              <  2:708585‑M1/30‑2 (MQ=255)                             aaGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGAT‑GGCACTGTGCAAACGGCTCTCGAACACCTTGGTTTGGGAGAAGGctctgcattacctgt                                                                                                             >  1:30372‑M1/1‑128 (MQ=255)                             aaGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGAT‑GGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgt                                                                                                             <  1:436807‑M1/143‑16 (MQ=255)                              ctgtgttctggtcatttgttgatacgcgtacatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATgc                                                                                                             >  2:390453‑M1/113‑143 (MQ=255)                               ggggCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGCTATCAAATCGGAT‑GGCACCGTGCACACGGCCCTCGAAAACGGTGGCTTGGGAGAAGGctctgcattacctggtg                                                                                                           >  2:657288‑M1/1‑126 (MQ=255)                                gggCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCGAATCGGAT‑GGCAGTGTGCAAACGGCTCTCGAAAAACTTGGTTTGGGAGAAGGctctgcaatacaaggtga                                                                                                          >  2:80405‑M1/1‑125 (MQ=255)                                   ttctggtcatttgttgatacgcgtacatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgGTGGTTTGGGAGAAGGAGCACAACTCAAtgcagcac                                                                                                        <  2:428248‑M1/36‑2 (MQ=255)                                    tctggtcatttgttgatacgcgtacatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAAc                                                                                                       >  1:579286‑M1/107‑143 (MQ=255)                                     tcACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGAT‑GGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACgg                                                                                                     <  2:137205/142‑1 (MQ=255)                                     gcACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGAT‑GGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcc                                                                                                     <  2:676285‑M1/143‑24 (MQ=255)                                       aCGACCAGTTACTTACCGCACTGCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGAT‑GGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccg                                                                                                   >  2:667870‑M1/1‑118 (MQ=255)                                             ttgttgctacgcgtacatagccaataagcatgttacatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACAtt                                                                                              >  2:521828‑M1/98‑143 (MQ=255)                                             gtggagatacgcgtacatagccaataagcatgttaaagcctcctggtagaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACAtt                                                                                              >  2:659148‑M1/98‑143 (MQ=255)                                              ggtactgaccgCACTCCGCGCTCGGCGGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGAT‑GGCGCTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgt                                                                                            <  2:44151‑M1/141‑33 (MQ=255)                                               tgacttaccgCACTGCGCGCGCTGGCGTTAGGCCGGAAGGAGCCGTTTGGCGATATCCAATCGGAT‑GGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtg                                                                                           <  1:315657‑M1/141‑34 (MQ=255)                                                ttgatacgcgtacatagccaatgagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAgg                                                                                           >  2:82536‑M1/95‑143 (MQ=255)                                                        cgtacatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGTAGGAGCAAAACTCAACGCAGCAACGGCTACGTTAAGACGcacga                                                                                   <  2:20234‑M1/57‑3 (MQ=255)                                                        cgtacagagccaataagcatgttaaatccccctggtaagagcaggaatgatgccatttgcttgttatttcttcgttttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCg                                                                                   >  2:323462‑M1/87‑143 (MQ=255)                                                         gtacatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgcgatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGATACATTAGGACGCACCgg                                                                                  <  2:763354‑M1/58‑1 (MQ=255)                                                           acatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGtt                                                                                <  1:681005‑M1/60‑1 (MQ=255)                                                             tCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGAT‑GGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggagccctggccttcagccactc                                                                             >  2:566747‑M1/1‑96 (MQ=255)                                                                cgcgcTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGGCGATG‑ATTATCGTCGCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgc                                                                          <  1:173344‑M1/143‑51 (MQ=255)                                                                        tgTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGAT‑GGCACGGTGCAAACGGCTCTCGAAAACCTTGGTGTGGGAGAAGGctctgcattacctgttggtgtcccggttctggggggtgcagacacaccgccaacaggc                                                                  >  2:486195‑M1/1‑85 (MQ=255)                                                                           cgtttaatccccctggtagatgcaggcatgatgccagttgcttgttatttcttcattttcataaacgTTGGTTGGTGAGAAGGAGCAAATCTCAATGCAGCAACGGCTACATTAGGACGCCCCGGTTTCATAGCTATACCGGt                                                                >  2:629753‑M1/68‑143 (MQ=255)                                                                             ttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCACTGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATaccggcta                                                              <  1:18014‑M1/78‑4 (MQ=255)                                                                             ttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGCAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTa                                                              <  1:382382‑M1/78‑1 (MQ=255)                                                                                 gCAAGAATCCGTTTGGCGATATCAAATCGGAT‑GGCCCTGTGCAAACGGCTCTCGAAAACCTCGGTGTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACAGTCGGCCGCACCGGTGTCATAGCCATACCGGttgagctt                                                         >  2:175786/1‑137 (MQ=25)                                                                                 gCAAGAATCCGTTTGGCGATATCAAATCGGAT‑GGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaa                                                         <  1:467852‑M1/143‑68 (MQ=255)                                                                                 atccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGAt                                                          <  1:700610‑M1/82‑1 (MQ=255)                                                                                     ccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattgtcataaacgTTTGTTTGGGAGAAGGAGCAAAACTCAATGCCGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATtggt                                                      >  1:209586‑M1/58‑143 (MQ=255)                                                                                      aaTCCGTTTGGCGAGATCAAATCGGAT‑GGCACTGTGCAAACGGCTCTCGAAACCCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaatgcaa                                                    <  2:57704‑M1/143‑73 (MQ=255)                                                                                       ctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATtggtgg                                                    <  1:441480‑M1/88‑1 (MQ=255)                                                                                           taaaagcaagaatgattccatttgcttgttatttcttcattttcatcaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTAtt                                                >  1:208982‑M1/52‑143 (MQ=255)                                                                                             aaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTTGTATTGa                                              >  2:681005‑M1/50‑143 (MQ=255)                                                                                                gcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAGGGCGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGCTTGGTGGTATTGAGCa                                           <  1:92940‑M1/97‑1 (MQ=255)                                                                                                  gATATCAAATCGGAT‑GGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaatgcaatggtgccgcttt                                        <  1:220220‑M1/143‑85 (MQ=255)                                                                                                        aaaTCGGAT‑GGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaatgcaatggtgccgctttttctgc                                  >  1:461568‑M1/1‑53 (MQ=255)                                                                                                             catttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCAtt                              <  1:627175‑M1/110‑1 (MQ=255)                                                                                                                    ttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGgggg                       <  2:670998‑M1/117‑1 (MQ=255)                                                                                                                       ttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATCCAGtgggggg                    <  1:334701‑M1/120‑2 (MQ=255)                                                                                                                         atttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTCTTGAGCAATCAGTAATCATTCAGTGGGGGTgg                  <  2:166827‑M1/122‑1 (MQ=255)                                                                                                                            tccttattttcataaatgTTGGGTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAAt               >  2:109555‑M1/19‑143 (MQ=255)                                                                                                                              ttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGc             <  1:758273‑M1/127‑1 (MQ=255)                                                                                                                                 gCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaatgcaatggtgccgctttttctgctgaagaatacccggaactggcaaa          <  1:692739‑M1/143‑115 (MQ=255)                                                                                                                                   tctcGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaatgcaatggtgccgctttttctgctgaagcatacccggaactggcaaagg        >  1:391431‑M1/1‑27 (MQ=255)                                                                                                                                   tctcGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaatgcaatggtgccgctttttctgctgaagaatacccggaactggcaaagg        <  1:667870‑M1/143‑117 (MQ=255)                                                                                                                                     tcGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaatgcaatggtgccgctttttctgctgcaggatacccggaactggcaaaggct      >  1:307084‑M1/1‑25 (MQ=255)                                                                                                                                       ataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGCTATGATTGGTGGTATTCAACAATCAGTAGTCATTCAGTGGGGGTGGAATGCAGCACAaga    <  2:205309‑M1/136‑2 (MQ=255)                                                                                                                                         aaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCCGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCAt  <  1:664636‑M1/138‑1 (MQ=255)                                                                                                                                              |                                                                                                                                          GGTGGAGGCATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGAT‑GGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCAT  >  NC_000913/1207650‑1207927

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.