| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1279401 = | 36 (0.870) | 4 (0.100) | 4/272 | 5.6 | 10.4% | intergenic (+53/‑463) | narK/narG | nitrate/nitrite transporter/nitrate reductase 1, alpha subunit |
| ? | NC_000913 | 1279431 = | 34 (0.850) | intergenic (+83/‑433) | narK/narG | nitrate/nitrite transporter/nitrate reductase 1, alpha subunit | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
CGGCGCAATGAAGGTATTTTTGATTTTCTATATCGCCTGCGTAGTGATTACCTGGGCGGTATATGGTCGGCATTCTAAAAAATAAACCGTTACTCGTCATACTTCGGGTTACATGTGCTGCGGCTGCGTTCATTCACCCCAGTCACTTACTTTAGTAAGCTCCTGGGATTCATTCACTTGCCGCCTTCCTG‑TAAACCGAATTATATAGAGTAAAATATTTGATTATCCTTTGCGCGGCATGATGTCGCGCTTTTTTTATGCGTCATTTAGTTACAACA > NC_000913/1279264‑1279541 | cGGCGCAATGGAGGTATTTTTGATTTTCTATATCGCCGGCGTAGTGATGACCTGGGCGGTATATGGTCGGCATTCGAAAAAATAAACCGTTACTCGTCATACTGCGGGTTACATGTGCTGCGGCTGCGTTCATTCACCCCAGt < 1:667691/143‑1 (MQ=255) ggcttgaTGAAGGTATTTTTGATTTTGTATGTCGCCTGCGAGGTGAATAGGTGGGCGGGATATGGTCGGCATTCTAAAAAATAAACCGTTACTCGTCATACTTCGGGTTACATGTGCTGCGGCTGCGTTCATTCACCCCAGTc < 1:165547/137‑1 (MQ=255) aGGTATTTTTGATTTTCTATCTCGCCTGCGTAGTGATTACCTGGGCGGTATATGGTCGGCATTCTAAAAAATAAACCGTTACTCGTCATACTTCGGGTTACATGTGCTGCGGCTGCGTTCATTCACCCCAGTCACTTACTTTa < 2:96653/143‑1 (MQ=255) aGGTATTTTTGATTTTCTATATCGCCTGCGTAGTGATTACCTGGGCGGTATATGGTCGGCATTCTAAAAAATAAACCGTTACTCGTCATACTTCGGGTTACATGTGCTGCGGCTGCGTTCATTCACCCCAGTCACTTACTTTa < 1:740057/143‑1 (MQ=255) tgcttttCTATATCGCCTGCGTAGTGATTACCTGGGCGGTATATGGTCGGCATTCTAAAAAATAAACCGTTACTCGTCATACTTCGGGTTACATGTGCTGCGGCTGCGTTCATTCACCCCAGTCACTTACTTTAGTAAGCTcc < 1:566758/140‑1 (MQ=255) tttttGTCTATCGCCGGCGGAGGGATTACCTGGGCGGTATATGGTCGGCATTCTAAAAAATAAACCGTTACTCGTCATACTTCGGGTTACATGTGCTGCGGCTGCGTTCATTCACCCCAGTCACTTACTTTAGTAAGCTCCTg < 2:642336/142‑1 (MQ=255) ttttCTATATCGCCTGCGTAGTGATTACCTGGGCGGTATATGGTCGGCATTCTAAAAAATAAACCGTTACTCGTCATACTTCGGGTTACATGTGCTGCGGCTGCGTTCATTCACCCCAGTCACTTACTTTAGTAAGCTCCTgg > 1:662319/1‑143 (MQ=255) tttCTATATCGCCTGCGTAGTGATTACCTGGGCGGTATATGGTCGGCATTCTAAAAAATAAACCGTTACTCGTCATACTTCGGGTTACATGTGCTGCGGCTGCGTTCATTCACCCCAGTCACTTACTTTAATAATCGCCTgtg > 2:531557/1‑141 (MQ=255) cGCCTGCGTAGTGATTACCTGGGCGGTATATGGTCGGCATTCTAAAAAATAAACCGTTACTCGTCATACTTCGGGGTACATGTGCTGCGGCTGCGTTCATTCACCCCAGTCACTTACTTTCGTAAGCTCCTGGGAttcattca > 2:705825/1‑143 (MQ=255) ttACCTGGGCGGTATATGGTCGGCATTCTAAAAAATAAACCGTTCCTCGTCATACTTCGGGTTACATGTGCTGCGGCTGCGTTCATTCACCCCAGTCCCTTACTTTAGTAAGCTCCTGGGATTCATTCACTTGCCGCCTTCCt < 1:393264/143‑1 (MQ=255) aCCTGGGCGGTATATGGTCGGCATTCTAAAAAATAAACCGTTACTCGTCATACTTCGGGTTACATGTGCTGCGGCTGCGTTCATTCACCCCAGTCACTTACTTTAGTAAGCTCCTGGGACTCATTCACTTGCCGCCTTCCTG‑t > 1:596038/1‑143 (MQ=255) ggCGGTATATGGTCGGCATTCTAAAAAATAAACCGTTACTCGTCATACTTCGGGTTACATGTGCTGCGGCTGCGTTCATTCACCCCAGTCACTTACTTTAGTAAGCTCCTGGGATTCATTCACTTGCCGCCTTCCTG‑TAAAcc > 2:453136/1‑143 (MQ=255) ggTATATGGTCGGCATTCTAAAAAATAAACCGTTACTCGTCATACTTCGGGTTACATGTGCTGCGGCTGCGTTCATTCACCCCAGTCACTTACTTTAGTAAGCTCCTGGGATTCATTCACTTGCCGCCTTCCTG‑TCATCCGat > 1:8736/1‑142 (MQ=255) gTCGGCATTCTAAAAAATAAACCGTTACTCGTCATACTTCGGGTTACATGTGCTGCGGCTGCGTTCATTCACCCCAGTCACTTACTTTAGTAAGCTCCTGGGATTCATTCACTTGCCGCCTTCCTG‑TAGACCGAATtataaac > 2:217781/1‑140 (MQ=255) aaaaTAAACCGTTACTCGTCATACTTCGGGTTACATGTGCTGCGGCTGCGTTCATTCACCCCAGTCACTTACTTTAGTAAGCTCCTGGGATTCATTCACTTGCCGCCTTCCTG‑TAAACCGAATTATATAGAGTAAAATATTTg < 1:451971/143‑1 (MQ=255) aaaaTAAACCGTTACTCGTCATACTTCGGGTTACATGTGCTGCGGCTGCGTTCATTCACCCCAGTCACGTACGTTAGTAAGCTCCTGGGAGTCATCCCATTG‑GGGTACCCTGTTAAACCGAATTATATAGAGTAAAATATTTg > 2:737740/1‑143 (MQ=255) aaaTTAACCGTTACTCGTCATACTTCGGATTACATGTGCTGCGGCTGCGTTCATTCACCCCAGTCACTTACTTTAGTAAGATCCTGGGATTCATTCACTTGCCGCCTTCCTG‑TACATCGAATTATATAGAGTAAAATACTTGa > 2:436689/1‑143 (MQ=25) aaaTAAACCGTTACTCGTCATACTTCGGGTTACATGTGCTGCGGCTGCGTTCATTCACCCCAGTCACTTACTTTAGTAAGCTCCTGGGATTCATTCACTTGCCGCCTTCCTG‑TAAACCGAATTATATAGAGTAAAATATTTGa > 1:79589/1‑143 (MQ=255) aaaCCGTTACTCGTCATACTTCGGGTTACATGTGCTGCGGCTGCGTTCATTCACCCCAGTCACTTACTCTAGTAGGCTCCTGGGATTCATTCACCTGCCGCGTCCCTG‑TAAACCGACTCATCTAGAGTCAAATACTGGATCAt > 2:495174/1‑143 (MQ=255) gTCATACTTCGGGTTACATGTGCTGCGGCTGCGTTCATTCACCCCAGTCACTTACTTTAGTAAGCTCCTGGGATTCATTCACTTGCCGCCTTCCTG‑TAAACCGAATTATATAGAGTAAAATATTTGATTATCCTTTGCGCGGc > 1:748555/1‑143 (MQ=255) gTCATACTTCGGGTTACATGTGCTGCGGCTGCGTTCATTCACCCCAGTCACTTACTTTAGTAAGCTCCTGGGATTCATTCACTTGCCGCCTTCCTG‑TAAACCGAATTATATAGAGTAAAATATTTGATTATCCTTTGCGCGGc > 1:495647/1‑143 (MQ=255) cTTCGGGTTACATGTGCTGCGGCTGCGTTCATTCACCCCAGTCACTTACTTTAGTAAGCTCCTGGGATTCATTCACTTGCCGCCTTCCTG‑TAAACCGAATTATATAGAGTAAAATATTTGATTATCCTTTGCGCGGCatgatg > 1:362648/1‑143 (MQ=255) cGGGTTACATGTGCTGCGGCTGCGTTCATTCACCCCAGTCACTTACTTTAGTAAGCTCCTGGGATTCATTCACTTGCCGCCTTCCTG‑TAAACCGAATTATATAGAGTAAAATATTTGATTATCCTTTGCGCGGCATGATGTcg > 1:630006/1‑143 (MQ=255) ggTTACATGTGCTGCGGCTGCGTTCATTCACCCCAGTCACTTACTTTAGTAAGCTCCTGGGATTCATTCACTTGCCGCCTTCCTG‑TAAACCGAATTATATAGAGTAAAATATTTGATTATCCTTTGCGCGGCATGATGTcgcg > 1:460670/1‑143 (MQ=255) aTGTGCTGCGGCTGCGTTCATTCACCCCAGTCACTTACTTTAGTAAGCTCCTGGGATTCATTCACTTGCCGCCTTCCTG‑TAAACCGAATTATATAGAGTAAAATTTGCGTCTATCCTTTGCGCGGCATGATGTCGCGCttttt > 1:316309/1‑143 (MQ=38) tgtgCTGCGGCTGCGTTCATTCACCCCAGTCACTTACTTTAGTAAGCTCCTGGGATTCATTCACTTGCCGCCTTCCTG‑TAAACCGAATTATATAGAGTAAAATATTTGATTATCCTTTGCGCGGCATGATGTCGCGCtttttt > 1:538182/1‑143 (MQ=255) gtgCTGCGGCTGCGTTCATTCACCCCAGTCACTTACTTTAGTAAGCTCCTGGGATTCATTCACTTGCCGCCTTCCTG‑TAAACCGAATTATATAGAGTAAAATATTTGATTATCCTTTGCGCGGCATGATGTCGCGCttttttt < 1:638102/143‑1 (MQ=255) ggtgcggctgcgTTCATCCACCCCAGTCACTTACTTTAGTAAGCTCCTGGGATTCATTCACTTGCCGCCTTCCTG‑TAAACCGAATTATATAGAGTAAAATATTTGATTATCCTTTGCGCGGCATGATGTCGCGCTTTTTTTAt < 2:43126/141‑1 (MQ=255) gctgcggctgcgTTCATTCACCCCAGTCACTTACTTTAGTAAGCTCCTGGGATTCATTCACTTGCCGCCTTCCTG‑TAAACCGAATTATATAGAGTAAAATATTTGATTATCCTTTGCGCGGCATGATGTCGCGCTTTTTTTAt > 1:54644/1‑143 (MQ=255) cgTTCATTCACCCTAGTCACTGACTTTAGTAAGCTCCTGTGATTCATTCACTTGCCGGCTCCGGG‑GGGACAACACGATATAGGGTAAAACATTTTATTATCCTTTGCGCGGCATGATGTCGCGCTTTTTTTATGCGTCATTTa < 1:352337/143‑1 (MQ=255) ttcattcaCCCCAGTCACTTACTTTAGTAAGCTCCTGGGATTCTTTCACTTGCCGCCTTCCTG‑TAAACCGAATTATATAGAGTAAAGTATTTGCTTATCCTTTGCGCGCCATGATGTCGCGCTTTTTTTATGCGTCCTTTGGt > 1:617111/1‑143 (MQ=255) ttcattcaCCCCAGTCACTTACTTTAGTAAGCTCCTGGGATTCATTCACTTGCCGCCTTCCTG‑TAAACCGAATTATATAGAGTAAAATATTTGATTATCCTTTGCGCGGCATGATGTCGCGCTTTTTTTATGCGTCATTTAGt < 1:705825/143‑1 (MQ=255) attcaCCCCAGTCACTTACTTTAGTAAGCTCCTGGGATTCATTCACTTGCCGCCTTCCTG‑TAAACCGAATTATATAGAGTAAAATATTTGATTATCCTTTGCGCGGCATGATGTCGCGCTTTTTTTATGCGTCATTTAGTTac < 2:364139/143‑1 (MQ=255) ttcaCCCCGGTCACTTACTTTAGTAGGCTCCTGGGATTCATTCACTTGCCGCCTTCCTG‑TAAACCGAATTATATAGAGTAAAATATTTGATTATCCTTTGCGCGTTATGGTTTCCCGCTATTTTTATGCGTCATTTAGTTaca < 2:419684/143‑1 (MQ=255) cccccAGTCAATTACTTTAGTAAGCTCCTGGGATTCATTCACTTGCCGCCTTCCTG‑TAAACCGAATTATATAGAGTAAAATATTTGATTATCCTTTGCGCGGCATGATGCCGCGCTTTTTTTATGCGTCATTTAGTTacagca > 2:132800/2‑143 (MQ=255) aCCCCAGTCACTTACTTTAGTAAGCTCCTGGGATTCATTCACTTGCCGCCTTCCTG‑TAAACCGAATTATATAGAGTAAAATATTTGATTATCCTTTGCGCGGCATGATGTCGCGCTTTTTTTATGCGTCATTTAGTTacaaca > 1:624915/1‑143 (MQ=255) | CGGCGCAATGAAGGTATTTTTGATTTTCTATATCGCCTGCGTAGTGATTACCTGGGCGGTATATGGTCGGCATTCTAAAAAATAAACCGTTACTCGTCATACTTCGGGTTACATGTGCTGCGGCTGCGTTCATTCACCCCAGTCACTTACTTTAGTAAGCTCCTGGGATTCATTCACTTGCCGCCTTCCTG‑TAAACCGAATTATATAGAGTAAAATATTTGATTATCCTTTGCGCGGCATGATGTCGCGCTTTTTTTATGCGTCATTTAGTTACAACA > NC_000913/1279264‑1279541 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |