| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2102943 | NA (NA) | 26 (0.630) | 23/282 | 0.9 | 45.6% | noncoding (1/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | 2103584 = | 31 (0.750) | coding (926/1119 nt) | wbbK | lipopolysaccharide biosynthesis protein | |||||
ATTTTCATTACGATAAATGAAATTTGCATCAGAGATATCTTTTTTGAGGTTACCTTTTTTGAAGTCAATAATAAGTTTAACTAACATGTCATCGTTATTAGAATCAAAAAAAGCTTTCTTTTCATAACTACCAAGAGTTTCTCTAGTAAATGGGAAATCTGATGCTAATACCCACTTACCTCGCTCTTTAGCTTCAGACAACGGCAATCCCCATGTTTCTAACCTAGAGGGAAAACAAACTATATCTGAAATATTATAACAATGATCGATTTTTTCTTTATCCAA > NC_000913/2103442‑2103726 | aagaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcggaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccc > 1:586391‑M2/143‑143 (MQ=255)aagaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccc > 2:300480‑M2/143‑143 (MQ=255) gaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTa > 1:602866‑M2/141‑143 (MQ=255) ttACGATAAATGAAATTTGCATCAGAGATATCTTTTTTGAGGTTACCTTTTTTGAAGTCAATAATAAGTTTAACTAACATGTCATCGTTATTAGAATCAAAAAAAGCTTTCTTTTCATAACTACCAAGAGTTTCTCTAGTaaa < 1:68986/143‑1 (MQ=255) gATAAATGAAATTTGCATCAGAGATATCTTTTTTGAGGTTACCTTTTTTGAAGTCAATAATAAGTTTAACTAACATGTCATCGTTATTAGAATCAAAAAAAGCTTTCTTTTCATAACTACCAAGAGTTTCTCTAGTAAATggg > 1:288787/1‑143 (MQ=255) ttcgtggtctgacggcgcctcctgcggaagtgactgtcggcgaaggcaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAGTAAATGGGa < 1:221779‑M2/13‑1 (MQ=255) aaaTGAAATTTGCATCAGAGATATCTTTTTTGAGGTTACCTTTTTTGAAGTCAATAATAAGTTTAACTAACATGTCATCGTTATTAGAATCAAAAAAAGCTTTCTTTTCATAACTACCAAGAGTTTCTCTAGTAAATGGGaaa < 2:254783/143‑1 (MQ=255) tGATATTTGCATCAGAGATATCTTTTTTGAGGTTACCTTTTTTGAAGTCAATAATAAGTTTAACTAACATGTCATCGTTATTAGAATCAAAAAAAGCTTTCTTTTCATAACTACCAAGAGTTTCTCTAGTAAATGGGAAATCt < 1:466976/143‑1 (MQ=255) aaaTTTGCATCAGAGATATCTTTTTTGAGGTTACCTTTTTTGAAGTCAATAATAAGTTTAACTAACATGTCATCGTTATTAGAATCAAAAAAAGCTTTCTTTTCATAACTACCAAGAGTTTCTCTAGTAAATGGGAAATCTGa < 1:510398/143‑1 (MQ=255) aaTTTGCATCAGAGATATCTTTTTTGAGGTTACCTTTTTTGAAGTCAATAATAAGTTTAACTAACATGTCATCGTTATTAGAATCAAAAAAAGCTTTCTTTTCATAACTACCAAGAGTTTCTCTAGTAAATGGGAAATCTGAt < 1:588651/143‑1 (MQ=255) atgtGCATCAGAGATATCTTTTTTGAGGTTACCTTTTTTGAAGTCAATAATAAGTTTAACTAACATGTCATCGTTATTAGAATCAAAAAAAGCTTTCTTTTCATAACTACCAAGAGTTTCTCTAGTAAATGGGAAATCTGATg < 1:118207/140‑1 (MQ=255) gacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAGTAAATGGGAAATCTGATGc < 1:273862‑M2/23‑1 (MQ=255) tCAGAGATATCTTTTTTGAGGTTACCTTTTTTGAAGTCAATAATAAGTTTAACTAACATGTCATCGTTATTAGAATAAAAAAAAGCTTTCTTTTCATAACTACCAAAAGTTTCTCTAGTAAAAGGGAAATCTGATGCTAATAc > 2:672668/1‑143 (MQ=255) ttactgctgaattcactgtcggtgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAGTACATGGGAAATCTGATGCTAATAccc > 2:469177‑M2/113‑143 (MQ=255) atatCTTTTTTGAGGTTACCTTTTTTGAAGTCAATAATAAGTTTAACTAACATGTCATCGTTATTAGAATCAAAAAAAGCTTTCTTTTCATAACTACCAAGAGTTTCTCTAGTAAATGGGAAATCTGATGCTAATACCCACtt < 1:438133/143‑1 (MQ=255) gctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagcgacttgttcgcaccttccCTAGTCAATTGGAACTCTGATCCTTATACCCCcttc > 2:241082‑M2/108‑142 (MQ=255) ctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgccccttccCTAGTCAATGGGAAGTCTGATGAGAATACCCAATTAc > 2:189504‑M2/107‑143 (MQ=255) gaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAGTAAATGCGAAATCTGGTGCTAATACCCACTTACCt > 2:26866‑M2/105‑143 (MQ=255) tgtcggcgaaggtaagttgatgactcatgatgaaccatgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAGTAAATGGGAAATCTGATGCTAATACCCACTTACCTCGCTCttt > 1:492595‑M2/97‑143 (MQ=255) ggTTACCTTTTTTGAAGTCAATAATAAGTTTAACTAACATGTCATCGTTATTAGAATCAAAAAAAGCTTTCTTTTCATAACTACCAAGAGTTTCTCTAGTAAATGGGAAATCTGATGCTAATACCCACTTACCTCGCTCTTTa < 1:559677/143‑1 (MQ=255) gTTACCTTTTTTGAAGTCAATAATAAGTTTAACTAACATGTCATCGTTATTAGAATCAAAAAAAGCTTTCTTTTCATAACTACCAAGAGTTTCTCTAGTAAATGGGAAATCTGATGCTAATACCCACTTACCTCGCTCTTTAg < 2:699487/143‑1 (MQ=255) ttACCGTTTTTGAAGTCAATAATAAGTTTAACTAACATGTCATCGTTATTAGAATCAAAAAAAGCTTTCTTTTCATACCTACCAAGAGTTTCTCTAGTAAATGGGAAATCTGATGCTAATACCCACTTACCTCGCTCTTTAGc < 1:759160/143‑1 (MQ=255) tcaCCTTTGTTGAAGTCAATAATAAGTTTAACTAACATGTCATCGTTATTAGAATCAAAAAAAGCTTTCTTTTCATAACTACCAAGAGTTTCTCTAGTAAATGGGAAATCTGATGCTAATACCCACTTACCTCGCTCTTTAGc < 1:460586/141‑1 (MQ=255) cgcaggtaagttgatcactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAGTAAATGGGAAATCTGATGCTAATACCCACTTACCTCGCTCTTTAGCTTc < 2:22964‑M2/53‑1 (MQ=255) gaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAGTAAATGGGAAATCTGATGCTAATACCCACTTACCTCGCTCTTTAGCTTCa < 1:249861‑M2/54‑1 (MQ=255) gaacgtaagttgatgactcatgatgaaccctgtcctatggctccagatcacaaacatgatctcatatcagggacttgttcgcaccttccCTAGTAAATGGGAAATCTGATGCTAATACCCACTTACCTCGCTCTTTAGCTTCa < 1:403756‑M2/54‑1 (MQ=255) ttttttAATTCAATAATAAGTTTAACTAACATGTCATCGTTATTAGAATCAAAAAAAGCTTTTTTTTCATAACTACCATGAGTTTCTCTAGTAAATGGGAATTCTGATTCTAATACTCACTTACCTCGCTCTTTATCTTTAgc > 2:67564/1‑142 (MQ=255) gtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTGGTAAATGGGAAATCTGATGCTAATACCCACTTACCTCGCTCTTTAGCTTCGGACa > 1:14585‑M2/86‑143 (MQ=255) gAAGTCAATAATAAGTGTAACTAACATGTCATCGTTATTAGAATCAAAAAAAGCTTTCTTTTCATAACTACCAAGAGTTTCTCTAGTAAATGGGAAATCTGATGCTAATACCCACTTACCTCGCTCTTTAGCTTCAGACAACg < 2:583579/143‑1 (MQ=255) ttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttacCTAGTAAATGGGAAATCTGATGCTAATACCCACTTACCTCGCACATTAGCTTCCAACAAGGGc > 2:238106‑M2/81‑143 (MQ=255) atgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAGTAAATGGGAAATCTGATGCTAATACCCACTTACCTCACTCTTTAGCTTCAGACAACGGCAAt > 1:329811‑M2/78‑143 (MQ=255) aaataatAAGTTTAACTAACATGTCATCGTTATTAGAATCAAAAAAAGCTTTCTTTTCATAACTACCAAGAGTTTCTCTAGTAAATGGGAAATCTGATGCTAATACCCACTTACCTCGCTCTTTAGCTTCAGACAACGGCAAt < 2:322293/142‑1 (MQ=255) ctaacATGTCATCGTTATTAGAATCAAAAAAAGCTTTCTTTTCATAACTACCAAGAGTTTCTCTAGTAAATGGGAAATCTGATGCTAATACCCACTTACCTCGCTCTTTAGCTTCAGACAACGGCAATCCCCATGTTTCTAAc < 1:264145/143‑1 (MQ=255) cctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAGTAAATGGGAAATCTGATGCTAATACCCACTTACCTCGCTCTTTAGCTTCAGACAACGGCAATCCCCATGTTTCTCAcc > 2:579475‑M2/62‑143 (MQ=255) cccgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAGTAAATGGGAAATCTGATGCTAATACCCACTTACCTCGCTCTTTAGCTTCAGACAACGGCAATCCCCATGTTTCTAAcc < 1:307751‑M2/82‑1 (MQ=255) tgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAGTAAATGGGAAATCTGATGCTAATACCCACTTACCTCGCTCTTTAGCTTCAGACAACGGCAATCCCCATGTTTCTAACCTa < 2:492595‑M2/84‑1 (MQ=255) cATGTCATCGTTATTAGAATCAAAAAAAGCTTTCTTTTCATAACTACCAAGAGTTTCTCTAGTAAATGGGAAATCTGATGCTAATACCCACTTACCTCGCTCTTTAGCTTCAGCCAACGGCAATCCCCATGTTTCTAACCTag > 2:730784/1‑143 (MQ=255) ttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAGTAAATGGGAAATCTGATGCTAATACCCACTTACCTCGCTCTTTAGCTTCAGACAACGGCAATCCCCATGTTTCTAACCTaga < 1:300480‑M2/86‑1 (MQ=255) gTCATCGTTAGTAGAATCAAAAAAAGCTTTCTTTTCATAACTACCAAGCGTTTCTCTAGTAAATGGGAAATCTGATGCTAATACCCACTTACCTCGCTCTTTAGCTTCAGACAACGGCAATCCCCATGTTTCTAACCTAGAgg < 2:195138/143‑1 (MQ=255) gggctccacatgacaaacatgatctcatatcacggacttgttcgcaccttccCTAGTAAATCGGAAATCTGATGCTAATACCCACTTACCTCGCTCTTTAGCTTCAGACAACGGCAATCCCCATGTTTCTAACCTAGAGGGaa < 2:379907‑M2/91‑1 (MQ=255) aTCGTTATTAGAATCAAAAAAAGCTTTCTTTTCATAACTACCAAGAGTTTCTCTAGTAAATGGGAAATCTGATTCTAATACCCACTTACCTCGCTCTTTAGCTTCAGACAACGGCAATCCCCATGTTTCTAACCTAGAGGGaa > 2:120807/1‑143 (MQ=255) aTCGTTATTAGAATCAAAAAAAGCTTTCTTTTCATAACTACCAAGAGTTTCTCTAGTAAATGGGAAATCTGATGCTAATACCCACTTACCTCGCTCTTTAGCTTCAGACAACGGCAATCCCCATGTTTCTAACCTAGAGGGaa < 1:584934/143‑1 (MQ=255) cGTTATTAGAATCAAAAAAAGCTTTCTTTTCATAACTACCAAGAGTTTCTCTAGTAAATGGGAAATCTGATGCTAATACCCACTTACCTCGCTCTTTAGCTTCAGACAACGGCAATCCCCATGTTTCTAACCTAGAGGGaaaa < 2:197601/143‑1 (MQ=255) gtccagctcacaatcatgatctcatatcagggacttgttcgcaccttccCTAGTAAATGGGAAATCTGATGCTCATACCCACTTACCTCGCTCTTTAGCTTCAGACAACGGCAATCCCCATGTTTCTAACCTAGAGGGAaaac < 2:35535‑M2/94‑1 (MQ=255) ctttctttTCATAACTACCAAGAGTTTCTCTAGTAAATGGGAAATCTGATGCTAATACCCACTTACCTCGCTCTTTAGCTTCAGACAACGGCAATCCCCATGTTTCTAACCTAGAGGGAAAACAAACTATATCTGAAAtatta > 2:605893/1‑143 (MQ=255) ctttctttTCATAACTACCAAGAGTTTCTCTAGTAAATGGGAAATCTGATGCTAATACCCACTTACCTCGCTCTTTAGCTTCAGACAACGGCAATCCCCATGTTTCTAACCTAGAGGGAAAACAAACTATATCTGAAAtatta < 2:486092/143‑1 (MQ=255) tcagatcagggacttgttcgcaccttccCTAGGAAATGGGAAATCTGATGCTAATACCCACTTACCTCGCTCTTTAGCTTCAGACAACGGCAATCCCCATGTTTCTAACCTAGAGGGAAAACAAACTATATCTGAAAtattat < 1:495172‑M2/115‑1 (MQ=255) ttCATAACTACCAAGAGTTTCTCTAGTAAATGGGAAATCTGATGCTAATACCCACTTACCTCGCTCTTTAGCTTCAGACAACGGCAATCCCCATGTTTCTAACCTAGAGGGAAAACAAACTATATCTGAAATATTATAACAAt > 1:102816/1‑143 (MQ=255) ttCATAACTACCAAGAGTTTCTCTAGTAAATGGGAAATCTGATGCTAATACCCACTTACCTCGCTCTTTAGCTTCAGACAACGGCAATCCCCATGTTTCTAACCTAGAGGGAAAACAAACTATATCTGAAATATTATAACAAt < 2:633780/143‑1 (MQ=255) ggacttgttcgcaccttccCTAGTAAATGGGAAATCTGATGCTAATACCCACTTACCTCGCTCTTTAGCTTCAGACAACGGCAATCCCCATGTTTCTAACCTAGAGGGAAAACAAACTATATCTGAAATATTATAACAATGAt > 1:302551‑M2/20‑143 (MQ=255) ttgttcgcaccttccCTAGTAAATGGGAAATCTGATGCTAATACCCACTTACCTCGCTCTTTAGCTTCAGACAACGGCAATCCCCATGTTTCTAACCTAGAGGGACAACAAACTATATCTGAAATATTATAACAATGATCGAt > 2:577382‑M2/16‑143 (MQ=255) ttgttcgcaccttccCTAGTAAATGGGAAATCTGATGCTAATACCCACTTACCTCGCTCTTTAGCTTCAGACAACGGCAATCCCCATGTTTCTAACCTAGAGGGAAAACAAACTATATCTGAAATATTATAACAATGATCGAt > 2:481572‑M2/16‑143 (MQ=255) cTAACAAGAGTTTCTCTAGTAACTGGGAAATCTGATGCTAATACCCACTTACCTCGCTCTTTAGCTTCAGACAACGGCAATCCCCATGTTTCTAACCTAGAGGGAAAACAAACTATATCTGAAATATTATAACAATGATCGAt < 1:198440/143‑1 (MQ=255) agagTTTCTCTAGTAAATGGGAAATCTGATGCTAATCCCCACTTACCTCGCTCTTTAGCTTCAGACAACGGCAATCCCCATGTCTCTAACCTCGACGGACAACAAACTATATCTCACCTCTTATAACCATGATCGATTTTTTc > 2:230990/1‑143 (MQ=255) agTTTCTCTAGTAAATGGGAAATCTGATGCTAATACCCACTTACCTCGCTCTTTAGCTTCAGACAACGGCAATCCCCATGTTTCTAACCTAGAGGGAAAACAAACTATATCTGAAATATTATAACAATGATCGATTTTTTCtt < 2:213363/143‑1 (MQ=255) ctttCTCTATTAAATGAGAAATCTCATGCTAATACCCACTTACCTCGCTCTTTAGCTTCAGACAACGGCAATCCCCATGTTTCTAACCTAGAGGGAAAACAAACTATATCTGAAATATTATAACAATGATCGATTTTTTCttt < 2:599604/142‑1 (MQ=255) tctAGTAAATGGGAAATCTGATGCTAATACCCACGTACCTCGCTCTTTAGCTTCAGACAACGGCAATCCCCATGTTTCTAACCTAGAGGGAAACCACACTGTAGCCGGAATAGTATAACAATGCTCGATTTTTTCTTTATCCa > 1:78260/1‑143 (MQ=255) ctAGTAAATGGGAAATCTGATGCTAATACCCACTTACCTCGCTCTTTAGCTTCAGACAACGGCAATCCCCATGTTTCTAATCTAGAGGGAAAAAAAACTATAGCTGAAATATTATAACCATGTTCCAGTTTTTCTTTAtaaaa > 1:380356/1‑139 (MQ=255) | ATTTTCATTACGATAAATGAAATTTGCATCAGAGATATCTTTTTTGAGGTTACCTTTTTTGAAGTCAATAATAAGTTTAACTAACATGTCATCGTTATTAGAATCAAAAAAAGCTTTCTTTTCATAACTACCAAGAGTTTCTCTAGTAAATGGGAAATCTGATGCTAATACCCACTTACCTCGCTCTTTAGCTTCAGACAACGGCAATCCCCATGTTTCTAACCTAGAGGGAAAACAAACTATATCTGAAATATTATAACAATGATCGATTTTTTCTTTATCCAA > NC_000913/2103442‑2103726 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |