New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 303629	44 (1.090)	4 (0.110)	4/256	5.1	9.2%	intergenic (+24/+224)	yagU/ykgJ	DUF1440 family inner membrane acid resistance protein/UPF0153 cysteine cluster protein
	?	NC_000913	= 303636	39 (1.070)					intergenic (+31/+217)	yagU/ykgJ	DUF1440 family inner membrane acid resistance protein/UPF0153 cysteine cluster protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CTGAAATTTTTGGACATTTAGTCTGGTTCTGGTCTATTGAAATTATTCGCAGAGATTTACGAAACAGAATTACTCATGAGCCAGACCCTGAGATCCCTTTAGGCTCAAACAGATAATGCATTGAATGATAAAAATGGCGCAAATACAGCGCCATTTTTATAGGTTAAAAACATTGCTTTTTATATTCTGATGCAGATAGTCAGTGAGTATATCGCGCTACTTCAGGATGATGTAGATCCGAAGAACGCTACAGAAGAGAGGCATTGTTGCTGGCAAATAGAA  >  NC_000913/303490‑303771                                                                                                                                            |                                                                                                                                               cTGAAATTTTTGGCCATTTAGTCTGGTTCTGGTCTATTGAAATTATTCGCAGAGATTTACGAAACAGAATTACTCATGAGCCAGACCCTGAGATCCCTTTAGGCTCAAACAGATAATGCATTGAATGATAAAAATGGCGCaaa                                                                                                                                             <  1:467197/143‑1 (MQ=255)   gAAATTTTTGGACATTTAGTCTGGTTCTGGTCTATTGAAATTATTCGCAGAGATTTACGAAACAGAATTACTCATGAGCCAGACCCTGAGATCCCTTTAGGCTCAAACAGATAATGCATTGAATGATAAAAATGGCGCAAATa                                                                                                                                           >  1:594791/1‑143 (MQ=255)    aaaTTTTTGGACATTTAGTCTGGTTCTGGTCTATTGAAATTATTCGCAGAGATTTACGAAACAGAATTACTCATGAGCCAGACCCTGAGATCCCTTTAGGCTCAAACAGATAATGCATTGAATGATAAAAATGGCGCAAATAc                                                                                                                                          >  1:322424/1‑143 (MQ=255)          ttGGACATTTAGTCTGGTTCTGGTCTATTGAAATTATTCGCAGAGATTTACGAAACAGAATTACTCATGAGCCAGACCCTGAGATCCCTTTAGGCTCAAACAGATAATGCATTGAATGATAAAAATGGCGCAAATACAGCGcc                                                                                                                                    >  1:5543/1‑143 (MQ=255)             gACCTTTAGGTTGGTTCTGGTCCATTGAAATTATTCGCAGAGATTTACGAAACAGAATTACTTCTGAGCCAGACCCTGAGATCCCTTTAGGCTCACTCTGTGCATTCATTGATTGATAAAAATGGCGCAAATACAGCGCCAtt                                                                                                                                 <  2:717372/143‑1 (MQ=255)              aCATTTAGTCTGGTTCTGGTCTATTGAAATTATTCGCAGAGACTTACGAAACAGAATTACTCATGAGCCAGACCCTGAGATCCCTTTAGGCTCAAACAGATAATGCATTGAATGATAAAAATGGCGCAAATACAGCGCCAttt                                                                                                                                <  1:334543/143‑1 (MQ=255)                 cctaccctggttctggtCTATTGAAATTATTCGCAGAGATTCACGAAACAGAATTACTCATGAGCCAGACCCTGACATCCCTTTAGGCTCAAACAGATAATGCATTGAATGATAAAAATGGCGCAAATACAGCGCCATTTTta                                                                                                                             <  1:107491/137‑1 (MQ=255)                   tAGTCTGGTTCTGTTCTATTGAAATTATTCGCAGAGATTTACGAAACAGAATTACTCATGAGCCAGACCCTGAGATCCCTTTAGGCTCAAACAGATAATGCATTGAATGATAAAAATGGCGCAAATACAGCGCCATTTTtata                                                                                                                           <  2:83473/143‑1 (MQ=255)                                gtCTATTGAAATTATTCGCAGAGATTTACGAAACAGAATTACTCATGAGCCAGACCCTGAGATCCCTTTAGGCTCAAACAGATAATGCATTGAATGATAAAAATGGCGCAAATACAGCGCCATTTTTATGGGTTAAAAACAtt                                                                                                              >  1:164086/1‑143 (MQ=255)                                gtCTATTGAAATTATTCGCAGAGATTTACGAAACAGAATTACTCATGAGCCAGACCCTGAGATCCCTTTAGGCTCAAACAGATAATGCATTGAATGATAAAAATGGCGCAAATACAGCGCCATTTTTATAGGTTAAAAACAtt                                                                                                              >  1:543867/1‑143 (MQ=255)                                   tATTGAAATTATTCGCAGAGATTTACGAAACAGAATTACTCATGAGCCAGACCCTGAGATCCCTTTAGGCTCAAACAGATAATGCATTGAATGATAAAAATGGCGCAAATACAGCGCCATTTTTATAGGTTAAAAACATTGCt                                                                                                           <  1:128860/143‑1 (MQ=255)                                   tATTGAAATTATTCGCAGAGATTTACGAAACAGAATTACTCATGAGCCAGACCCTGAGATCCCTTTAGGCTCAAACAGATAATGCATTGAATGATAAAAATGGCGCAAATACAGCGCCATTTTTATAGGTTAAAAACATTGCt                                                                                                           <  1:500334/143‑1 (MQ=255)                                   tATTGAAATTATTCGCAGAGATTTACGAAACAGAATTACTCATGAGCCAGACCCTGAGATCCCTTTAGGCTCAAACAGATAATGCATTGAATGATAAAAATGGCGCAAATACAGCGCCACTTTTATAGGTTAAAAACATTGCt                                                                                                           >  2:630751/1‑143 (MQ=255)                                       gAAATTATTCGCAGAGATTTACGAAACAGAATTACTCATGAGCCAGACCCTGAGATCCCTTTAGGCTCAAACAGATAATGCATTGAATGATAAAAATGGCGCAAATACAGCGCCATTTTTATAGGTTAAAAACATTGCttttt                                                                                                       >  1:708376/1‑143 (MQ=255)                                        aaaTTATTCGCAGAGATTTACGAAACAGAATTACTCATGAGCCAGACCCTGAGATCCCTTTAGGCTCAAACAGATAATGCATTGAATGATAAAAATGGCGCAAATACAGCGCCATTTTTATAGGTTAAAAACATTGCTTTTta                                                                                                      >  1:351648/1‑143 (MQ=255)                                                     agaTTTACGAAACAGAATTACTCATGAGCCAGACCCTGAGATCCCTTTAGGCTCAAACAGATAATGCATTGAATGATAAAAATGGCGCAAATACAGCGCCATTTTTATAGGTTAAAAACATTGCTTTTTATATTCTGATGCAg                                                                                         <  2:301762/143‑1 (MQ=255)                                                                       tACTCATGAGCCAGACCCTGAGATCCCTTTAGGCTCAAACAGATAATGCATTGAATGATAAAAATGGCGCAAATACAGCGCCATTTTTATAGGTTAAAAACATTGCTTTTTATATTCTGATGCAGATAGTCAGTGAGTATATc                                                                       <  1:496812/143‑1 (MQ=255)                                                                          tCATGAGCCAGACCCTGAGATCCCTTTAGGCTCAAACAGATAATGCATTGAATGATAAAAATGGCGCAAATACAGCGCCATTTTTATAGGTTAAAAACATTGCTTTTTATATTCTGATGCCGATAGTCAGTGAGTATATcgcg                                                                    >  1:148253/1‑143 (MQ=255)                                                                          tCATGAGCCAGACCCTGAGATCCCTTTAGGCTCAAACAGATAATGCATTGAATGATAAAAATGGCGCAAATACAGCGCCATTTTTATAGGTTAAAAACATTGCTTTTTATATTCCGATGCAGGTATTCAGTGAGTCTATcgcg                                                                    >  1:197473/1‑143 (MQ=255)                                                                             tGAGCCAGACCCTGAGATCCCTTTAGGCTCAAACAGATAATGCATTGAATGATAAAAATGGCGCAAATACAGCGCCATTTTTATAGGTTAAAAACATTGCTTTTTATATTCTGATGCAGATAGTCAGTGAGTATATCGCGCTa                                                                 <  1:509205/143‑1 (MQ=255)                                                                                    tacgcTGAGATCCGTTGTGGCTCAAACAGATAATGCATTGAATGATCAAACCCGCGCAAATGCAGCGGCATTTTTATAGGTTAAAAACATTGCTTGTGATATTCTGATGCAGATAGTCAGTGAGTATATCGCGCTACTTCAgg                                                          <  2:436963/139‑1 (MQ=255)                                                                                         tGAGATCCCTTTAGGCTCAAACAGATAATGCATTGAATGATAAAAATGGCTCAAATACAAAGCCATTTGTAGAGGTTAAAAACATTGCTTTTTATATTCTGATGCAGATAGTCAGTGAGTATATCGCGCTACTTCAGgatgat                                                     <  2:518225/143‑1 (MQ=255)                                                                                         tGAGATCCCTTTAGGCTCAAACAGATAATGCATTGAATGATAAAAATGGCGCAAATACAGCGCCATTTTTATAGGTTAAAAACATTGCTTTTTATATTCTGATGCAGATAGTCAGTGAGTATATCGCGCTACTTCAGgatgat                                                     <  2:708376/143‑1 (MQ=255)                                                                                          gagaTCCCTTTAGGCTCAAACAGATAATGCATTGAATGATAAAAATGGCGCAAATACAGCGCCATTTTTATAGGTTAAAAACATTGCTTTTTATATTCTGATGCAGATAGTCAGTGAGTATATCGCGCTACTTCAGGatgatg                                                    >  1:137583/1‑143 (MQ=255)                                                                                                ccTTTAGGCTCAAACAGATAATGCATTGAATGATAAAAATGGCGCAAATACAGCGCCATTTTTATAGGTTAAAAACATTGCTTTTTATATTCTGATGCAGATAGTCAGTGAGTATATCGCGCTACTTCAGGATGATGCAGATc                                              >  2:368488/1‑143 (MQ=255)                                                                                                 cTTTAGGCGCAAACCGATCATGCCTCGAATGATAAAATTGGCGCTAATACAGCGCCATTTTTATAGGTTAAAAACATTGCTTTTTATATTCTGATGCAGATAGTCAGTGAGTATATCGCGCTACTTCAGGATGATGTAGATcc                                             <  2:277101/143‑1 (MQ=255)                                                                                                       gCTCAAACAGATAATGCATTGAATGATAAAAATGGCGCAAATACAGCGCCATTTTTATAGGTTAAAAACATTGCTTTTTGTATTCTGATGCAGATAGTCAGTGAGTATATGGCGCTACTTCAGGGTGATGGAGAGCCggagaa                                       >  1:510716/1‑143 (MQ=255)                                                                                                        cTCAAACAGATAATGCATTGCATGATACACACGGCGCAAATACAGCGCAATTCCAACAAACCTAAGACCTCAAGGTGTATGGTCTACTGCAGATACACAGTGAGTATATCGCGCTCCTTCATGAGTATGTAGATCAGAAGAAc                                      >  2:519502/1‑143 (MQ=255)                                                                                                         tCAAACAGATAATGCATTGAATGATAAAAATGGCGCAAATACAGCGCCATTTTTATAGGTTAAAAACATTGCTTTTTATATTCTGATGCAGATAGTCCGTGAGTATATCGCGCTACTTCAGGATGATTGAGATACGCAGAACg                                     >  2:351482/1‑143 (MQ=255)                                                                                                          cAAACAGATAATGCATTGAATGATAAAAATGGCGCAAATACAGCGCCATTTTTATAGGTTAAAAACATTGCTTTTTATATGCGGATGCAGATAGTGCGTGAGTATATCGCGCTACTTCAGGATGATGTAGATCCGAAGAACGc                                    <  1:309778/143‑1 (MQ=255)                                                                                                          cAAACAGATAATGCATGGAATGATAAAAATGGCGCAAATACAGCGCCATTTTTATAGGTTAAAAACATTGCTTTTTATATTCTGATGCAGATAGTCAGTGAGTATATCGCGCTACTTCAGGATGATGTAGATCCGAAGAACGc                                    <  1:86012/143‑1 (MQ=255)                                                                                                            aaCAGATAATGCATTGAATGATAAAAATGGCGCAAATACAGCGCCATTTTTATAGGTTAAAAACCTAGCTCTTTATATTCTGATGCAGATAGTCAGTGAGTATATCGCGCTACTTCAGGATGATGTAGATCCGAAGAACGCTa                                  <  2:594791/143‑1 (MQ=255)                                                                                                                   aaTGCATTGAATGCTAAAAATGGCGCAAATACAGCGCCATTTTTATAGGTTAAAAACATTGCTTTTTATATTCTGATGCAGATAGTCAGTGAGTATATCGCGCTACTTCAGGATGATGTAGATCCGAAGAACGCTACagaaga                           <  1:509237/143‑1 (MQ=255)                                                                                                                       cATTGTAGGATTAGAATGGCGCGTATACATCGTCATGTTTATAGGTTAAATGCGTTGCTTTTTATATTCTGATGCAGATAGTCAGTGAGTATATCGCGCTACTGCAGGATGATGTAGATCCGAAGAACGCTACAGAAGAGAgg                       <  2:178454/143‑1 (MQ=255)                                                                                                                       cATTGAATGATAAAAATGGCGCAAATACAGCGCCATTTTTATAGGTTAAAAACATTGCTTTTTATATTCTGAGGCAGATAGTCAGTGAGTATATCGCGCTAATTCAGGATGATGTAGATCCGAAGAACGCTACAGAAGAGAgg                       <  2:243804/143‑1 (MQ=255)                                                                                                                         ttGAATGTTAAAAAGGGCGCAAATACAGCGCCATTTTTATAGGTTAAAAACATTTCTTTTTATATTCTGATGCAGATAGTCAGTGAGTATATCGCGCTACTGCAGGATGATGTAGATCCGCACACCGCTACAGAAGAGAGGCa                     <  2:523496/143‑1 (MQ=255)                                                                                                                            aaTGATAAAAATGGCGCAAATACAGCGCCATTTTTATAGGTTAAAAACATTGCTTTTTATATTCTGATGCAGATAGTCAGTGAGTATATCGCGCTACTTCAGGATGATGTAGATCCGAAGAACGCTACAGAAGAGAGGCAtcg                  >  2:310433/1‑141 (MQ=255)                                                                                                                                 tAAAAATGGCGCAAATACAGCGCCATTTTTATAGGTTAAAAACATTGCTTTTTATATTCTGATGCAGATAGTCAGTGAGTATATCGCGCTACTTCAGGATGATGTAGATCCGAAGAACGCTACAGAAGAGAGGCATTGTTGCt             <  1:520072/143‑1 (MQ=255)                                                                                                                                  aaagaTGGCGCAAATACAGCGCCATTGTTATAGGTTAAAAACATTGCTTTTTATATTCTGATGCAGATAGTCAGTGAGTATATCGCGCTACTTCAGGATGATGTAGATCCGAAGAACGCTACAGAAGAGAGGCATTGTTGCTg            <  2:612241/143‑1 (MQ=255)                                                                                                                                    aaaTAGCGCAAATACAGCGCCATTTTTCTAGGTTAAAAACAGTGCTTTTGATATTCTGATGCAGATAGACAGTGAGTATATCACGCTACTTCAGATAGATGTAGAGCTGAAGAAGCCTACAGAAGAGAGGCATTGATGCTgcc          >  2:590454/1‑141 (MQ=255)                                                                                                                                       tGGCGCAAATTCAGCGCCATTTTTATAGGTTAAAAACATTGCTTTTTATATTCTGATGCAGATAGTCAGTGAGTATATCGCGCTACTTCAGGATGATGTAGATCCGAAGAACGCTACAGAAGAGAGGCATTGTTGCTGGCaaa       <  2:177827/143‑1 (MQ=255)                                                                                                                                         gcgcAAATACAGCGCCATTTTTATAGGTTAAAAACATTGCTTTTTATATTCTGATGCAGATAGTCAGTGAGTATATCGCGCTACTTCAGGATGATGTAGATCCGAAGCACGCTACAGCAGAGCGGCCTTGTTGCCGGCcaaca     >  2:342705/1‑141 (MQ=255)                                                                                                                                         gcgcAAATACAGCGCCATTTTTATAGGTTAAAAACATTGCTTTTTATATTCTGATGCAGATAGTCAGTGAGTATATCGCGCTACTTCAGGATGATGTAGATCCGAAGAACGCTACAGAAGAGAGGCATTGTTGCTGGCAAATa     >  2:506529/1‑143 (MQ=255)                                                                                                                                            cAAATACAGCGCCATTTTTATAGGTTAAAAACATTGCTTTTTATATTCTGATGCAGATAGTCAGTGAGTATATCGCGCTACTTCAGGATGATGTAGATCCGAAGAACGCTACAGAAGAGAGGCATTGTTGCTGGCAAATagaa  <  1:569207/143‑1 (MQ=255)                                                                                                                                            |                                                                                                                                               CTGAAATTTTTGGACATTTAGTCTGGTTCTGGTCTATTGAAATTATTCGCAGAGATTTACGAAACAGAATTACTCATGAGCCAGACCCTGAGATCCCTTTAGGCTCAAACAGATAATGCATTGAATGATAAAAATGGCGCAAATACAGCGCCATTTTTATAGGTTAAAAACATTGCTTTTTATATTCTGATGCAGATAGTCAGTGAGTATATCGCGCTACTTCAGGATGATGTAGATCCGAAGAACGCTACAGAAGAGAGGCATTGTTGCTGGCAAATAGAA  >  NC_000913/303490‑303771

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.