New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1179565 =	46 (1.140)	3 (0.080)	3/270	5.9	6.7%	intergenic (+61/‑66)	nagK/cobB	N‑acetyl‑D‑glucosamine kinase/deacetylase of acs and cheY, chemotaxis regulator
	?	NC_000913	1179588 =	39 (1.010)					intergenic (+84/‑43)	nagK/cobB	N‑acetyl‑D‑glucosamine kinase/deacetylase of acs and cheY, chemotaxis regulator
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GTGTTCCGCGCATTGAACGCGCGCGCCACGGTGATGCGGGAGGAATGCGTGGTGCGGCCTTCCTACATCTAACCGATTAAACAACAGAGGTTGCTATGCTGTCGCGTCGGGGTCATCGGTTAAGTCGTTTTCGTAAAAATAAACGCCGCCTGCGCGAGCGTTTGCGTCAGCGTATTTTTTTCAGAGATAAAGTGGTGCCGGAAGCAATGGAAAAACCAAGAGTACTCGTACTGACAGGGGCAGGAATTTCTGCGGAATCAGGTATTCGTACCTTTCGCGCC  >  NC_000913/1179425‑1179705                                                                                                                                             |                                                                                                                                             gtgtTCCGCGCATTGAACGCGCGCGCCACGGTGATGCGGGAGGAATGCGTGGTGCGGCCTTCCTACATCTAACCGATTAAACAACAGAGGTTGCTATGCTGTCGCGTCGGGGTCATCGGTTAAGTCGTTTTCGTAAAAATaaa                                                                                                                                            <  1:577427/143‑1 (MQ=255)    ttCCGCGCATTGAACGCGCGCGCCACGGTGATGCGGGAGGAATGCGTGGTGCGGCCTTCCTACATCTAACCGATTAAACAACAGAGGTTGCTATGCTGTCGCGTCGGGGTCATCGGTTAAGTCGTTTTCGTAAAAATAAAcgc                                                                                                                                         >  1:485443/1‑143 (MQ=255)    tggcgcgCATTGAGCGCGCGCGCGACGCTGATGCGGGAGCAATGCGTGGCGCGGCCTTGCTACATCTAACCGCTGAAACAACAGAGGTTTCTACGCTGTCGCGTCGGGGTCATCGGTTAAGTCGTTTTCGTAAAAATAAAcgc                                                                                                                                         <  2:453861/140‑1 (MQ=255)        gcgcATTGAACGCGCGCGCCACGGTGATGCGGGAGGAATGCGTGGTGCGGCCTTCCTACATCTAACCGATTAGGCAACAGAGGTTGCTATGCTGTCCGGTCGGGGTCATCGGTTAGGTCGTTTTCGTAGAAATAAACgccgcc                                                                                                                                     >  1:61515/1‑143 (MQ=255)        gcgcATTGAACGCGCGCGCCACGGTGATGCGGGAGGAATGCGTGGTGCCGCCTTCCTACATCTAACCGAATAAACAACAGAGGTGGATATGCTGTCGCGTCGGGGTCAACGGGTAAGTGGTATTCGTAAAAATCAAggcacac                                                                                                                                     >  2:238696/1‑139 (MQ=255)             ttGAACGCGCGCGCCACGGTGATGCGGGAGGAATGCGTGGTGCGGCCTTCCTACATCTAACCGATTAAACAACAGAGGTTGCTATGCTGTCGCGTCGGGGTCATCGGTTAAGTCGTTTTCGTGAAAATAAACGCCGCCTgcgc                                                                                                                                >  2:346575/1‑143 (MQ=255)               gAACGCGCGCGCCACGGTGATGCGGGAGGAATGCGTGGTGCGGCCTTCCTACATCTAACCGATTAAACAACAGAGGTTGCTATGCTGTCGCGTCGGGGTCATCGGTTAAGTCGTTTTCGTAAAAATAAACGCCGCCTGCGCGa                                                                                                                              <  1:124057/143‑1 (MQ=255)                    cgcgcgcCACGGTGATGCGGGAGGAATGCGTGGTGCGGCCTTCCTACATCTAACCGATTAAACAACAGAGGTTGCTATGCTGTCGCGTCGGGGTCATCGGTTAAGTCGTTTTCGTAAAAATAAACGCCGCCTGCGTGAGCGtt                                                                                                                         <  2:406883/143‑1 (MQ=255)                    cgcgcgcCACGGTGATGCGGGAGGAATGCGTGGGGCGGCCTTCCTACATCTCACCGATTAAACAACAGAGGTTGCTATGCTGTCGCGTCGGGGTCATCGGTTAAGTCGTTTTCGTAAAAATAAACGCCGCCTGCGCGAGCGtt                                                                                                                         <  1:558009/143‑1 (MQ=255)                         gcCACGGTGATGCGGGAGGAATGCGTGGTGCGGCCTTCCTACATCTAAACGATTAAACAACAGAGGTTGCTATGCTGTCGCGTCGGGGTCATCGGTTAAGCTGGTTGCGGAAAAATACACGCCGCATGCGCGAGCGTTTCCgc                                                                                                                    >  1:232162/1‑142 (MQ=255)                           cACGGTGATGCGGGAGGAATGCGTGGTGCGGCCTTCCTACATCTAACCGATTAAACAACAGAGGTTGCTATGCTGTCGCGTCGGGGTCATCGGTTAAGTCGTTTTCGTAAAAATAAACGCCGCCTGCGCGAGCGTTTGCGTCa                                                                                                                  >  1:697047/1‑143 (MQ=255)                           cACGGTGAGGCGGGAGGAATGCGTGGTGCGGCCTTCCTACATCTAACCGATTAAACAACAGAGGCTGCTATGCTGTCGCGTCGGGGTCATCGGTTAAGTCGTTTTCGTAAAAATAAACGCCGACTGCGCGAGCGTTTGCGTCa                                                                                                                  <  1:512351/143‑1 (MQ=255)                                      gggagggaTGCGTGGGGCGGCCTTCGTACATCTAACCGATTAAACAACAGAGGTGGCTCTGCTGTCGCTTCGGGGTCATCGGTTAAGTCGTTTTCGTAAAAATAAATGCCGCCTGCGCGAGCGTTTGCGTCAGCGTAtttttt                                                                                                       <  2:263468/143‑1 (MQ=255)                                       gggggaATGCGTGGTGCGGCCTTGGTACGTCTAGCCGATTGAACAGCGGAGGTTGCTATGGTGTGGCGTCGGGGTCATCGGTTAAGTCGTTTTCGTAAAATTAAACGCCGCATGCGCGAGCGTTTGCGTCAGCGTAttttttt                                                                                                      <  1:596111/140‑1 (MQ=255)                                                    gtgCGGCCTTCCTACATCTAACCGATTAAACAACAGAGGTTGCTATGCTGTCGCGTCGGGGTCATCGGTTAAGTCGTTTTCGTAAAAATAAACGCCGCCTGCGCGAGCGTTTGCGTCAGCGTATTTTTTTCAGAGATAAAgtg                                                                                         <  1:387388/143‑1 (MQ=255)                                                         ttcTTCCTACATCTAACCGATTAAACAACAGAGGTTGCTATGCTGTCGCGTCGGGGTCATCGGTTAAGTCGTTTTCGTAAAAATAAACGCCGCCTGCGCGCGCGTGAGTGTCAGCGTATTTTTTTCAGCGACAAAggggtggc                                                                                    >  2:710073/3‑141 (MQ=255)                                                         gCCTTCCTACATCTAACCGATTACACAGCAGAGGTTGCTATGCGGTCGCGACGGGATCATAGGTTAAGGCGGTTTCGTAAAAATAAGCGCGGCCTGGCGGAGGGGTTGCGGCAGCGGTGTTTTTTGAGAGAGACGGTGGAGcc                                                                                    >  2:238578/1‑143 (MQ=255)                                                          tcTTCCTACATCTAACCGATTCAACAACAGAGGTTGCTATGCTTTCGCGTCGGGGCCATCGGTTCAGTCGTGTTCGTAGAAATAAACGCCGCCTGCGCGAGCGTTTGCGTCAGCGTATTTTTTTCAGAGATAAAGTGGTGCCg                                                                                   <  2:33974/142‑1 (MQ=255)                                                                 aCATCTAACCGATTAAACAACAGAGGTTGCTATGCTGTCGCGTCGGGGTCATCGGTTAAGTCGTTTTCGTAAAAATAAACGCCGCCTGCGCGAGCGTTTGCGTCAGCGTATTTTTTTCAGAGCTAAAGTGGGGCCGGGAGCaa                                                                            >  1:220219/1‑143 (MQ=255)                                                                   aTCTAACCGATTAAACAACAGAGGTTGCTATGCTGTCGCGTCGGGGTCATCGGTTAAGTCGTTTTCGTAAAAATAAACGCCGCCTGCGCGAGCGTTTGCGTCAGCGTATTTTTTTCAGAGATAAAGTGGTGCCGGAAGCAATg                                                                          <  2:586064/143‑1 (MQ=255)                                                                           gATTAAACAACAGAGGTTGCTATGCTGTCGCGTCGGGGTCATCGGTTAAGTCGTTTTCGTAAAAATAAACGCCGCCTGCGCGAGCGTTTGCGTCAGCGTATTTTTTTCAGAGATAAAGTGGTGCCGGAAGCAATGGAAAAAcc                                                                  >  1:515018/1‑143 (MQ=255)                                                                           gATTAAACAACAGAGGTTGCTATGCTGTCGCGTCGGGGTCATCGGTTAAGTCGTTTTCCTAAAAATAAACGCCGCCTGCGCGAGCGTTTGCGTCAGCGTATTTTTTTAAGAGATAAAGTGGTGCCGGAAGCAAGGGTAAAAcc                                                                  >  2:362750/1‑143 (MQ=255)                                                                            aTTAAACAACAGAGGTTGCTATGCTGTCGCGTCGGGGTCATAGGTTAAGTCGTTTTCGTAAAAATAAACGCCGGCTGCGCGAGCGTTTGCGTGAGCGTATTTTTCTCAGAGATAAAGCGGGGCCGCAAACAATGaaaaaaaga                                                                 >  2:24787/1‑140 (MQ=255)                                                                            aTTAAACAACAGAGGTTGCTACGCTGTCGCGTCGGGGTCATCGGTTAAGTCGTTTTCGTAAAAATAAACGCCGCCTGCGCGAGCGTTTGCGTCAGCGTATTTTTTTCAGAGATAAAGTGGTGCCGGAAGCAATGGAAAAACCa                                                                 >  2:28517/1‑143 (MQ=255)                                                                             ttAAACAACAGAGGTGGCTATGCTGTCGCGTCGGGGTCAGCGGTTAAGTCGTTTTCGGAAAAATAAACGCGGCGTGCGCGAGCGTTGGCGTCAGCGTATTTTTTTCAGAGATAAAGTGGTGCCGGAAGCAATGGAAAAACCaa                                                                <  2:238669/143‑1 (MQ=255)                                                                               aaaCAACAGAGGTTGCTATGCTGTCGCGTCGGGGTCATCGGTTAAGTCGTTTTCGTAAAAATAAACGCCGCCTGCGCGAGCGTTTGCGTCAGCGTATTTTTTTCAGAGATAAAGTGGTGCCGGAAGCAATGGAAAAACCAaga                                                              <  1:387194/143‑1 (MQ=255)                                                                                aaccacAGAGGTTGCTATGCTGTCACGGCGGGGGCATCTGTTAAGTCGTTTTCGTAAAAATGAACGCCGCCTGCGCGAGCGTTTGCGTCAGCGTATTTTTTTCAGAGATAAAGTGGTGCCGGAAGCAACGGAAAAACCAagag                                                             >  1:681066/1‑143 (MQ=255)                                                                                  caacaGAGGTTGCTATGCTGTCGCGTCGGGGTTATCGGTTAAGTCGTTTTCGTAAAAATACACGCCACCTGCGCGAGCGCTTGCGTCAGCGTATTTTTTTCAGCGATGACCTGGTCCCGGCAGCAATGGACGACCCCAGAGTa                                                           >  2:625978/1‑143 (MQ=255)                                                                                     ccgagGTCGTTATGCTGTCGCGTCGTGGTTATCGGTTAAGTCGTTTTCGTAACAATAAACGCCGTCTGCTCGAGCGTTTGCGTCAGCGTATTTTTTTCAGAGATAAAGTGGTGCCGGAAGCAATGGAAAAACCAAGAGTACTc                                                        <  2:199630/141‑1 (MQ=255)                                                                                     caccggTTGCTTTGCTGTCGCGTCGGGGTCATCGGTTAAGTCGTTTTCGTAAAAATAAACGCCGCCTGCGCGAGCGTTTGCGTCAGCGTATTTTTTTCAGAGATAAAGTGGTGCCGGAAGCAATGGAAAAACCAAGAGTACTc                                                        <  1:596116/139‑1 (MQ=255)                                                                                      agagGTTGCTATGCTGTCGCGTCGGGGTCATCGGTTAAGTCGTTTTCGTAAAAATAAACGCCGCCTGCGCGAGCGTTTGCGTCAGCGTATTTTTTTCAGAGATAAAGTGGTGCCGGAAGCAATGGAAAAACCAAGAGTACTCg                                                       <  1:188999/143‑1 (MQ=255)                                                                                             gCTATGCTGTCGCGTCGGGGTCATCGGTTAAGTCGTTTTCGTAAAAATAAACGCCGCCTGCGCGAGCGTTTGCGTCAGCGTATTTTTTTCAGAGATAAAGTGGTGCCGGAAGCAATGGAAAAGCCAAGAGTACTCGTACTGAc                                                >  1:609870/1‑143 (MQ=255)                                                                                              cTATGCTGTCGCGTCGGGGTCATCGGTTAAGTCGTTTTCGTAAAAATAAACGCCGCCTGCGCGAGCGTTTGCGTCAGCGTATTTTTTTCAGAGATAAAGTGGTGCCGGAAGCAATGGAAAAACCAAGAGTACTCGTACTGACa                                               >  1:184862/1‑143 (MQ=255)                                                                                               tATGCTGTCGCGTCGGGGTCATCGGTTAAGTCGTTTTCGTAAAAATAAACGCCGCCTGCGCGAGCGTTTGCGTCAGCGTATTTTTTTCAGAGATCAAGTGGTGCCGGAAGCAATGGAAAAACCAAGAGTACTCGTACTGACAg                                              >  1:673608/1‑143 (MQ=255)                                                                                                 tGCTGTCGCGTCGGGGTCATCGGTTAAGTCGTTTTCGTAAAAATAAACGCCGCCTGCGCGAGCGTTTGCGGCAGCGTATTTTTTTCAGAGATAAAGTGGTGCCGGAAGCAATGGAAAAACCAAGAGTACTCGTACTGACAggg                                            <  1:331395/143‑1 (MQ=255)                                                                                                 tGCCGTCGCGGCGGGCTCATCGGTTAAGTCGTGTGCGTAAAAATAAACGCCGCCTGCGCGAGCGTTTGCGTCAGCGTATTTTTTTCCGAGATAAAGTGGTGCCGGAAGCAATGGAAACACCCAGAGGTTGCGTACTGACAggg                                            <  2:261791/143‑1 (MQ=255)                                                                                                 ggCTGTGGCGGCGTGGTCATCGGTTAAGTCGTTTTCGTAAAAATAAACGCCGCCTGCGCGAGCGTTTGCGTCAGCGTATTTTTTTCAGAGAGAAAGTGGTGCCGGAAGCAATGGAAAAACCAAGAGTACTCGTACTGACAggg                                            <  2:25176/142‑1 (MQ=255)                                                                                                    tGTCGCGTCGGGGTCATCGGTTAAGTCGTTTTCGTAAAAATAAACGCCGCCTGCGCGAGCGTTTGCGTCAGCGTATTTTTTTCAGAGATAAAGTGGTGCCGGAAGCACTGGAAAAACCAAGAGTACTCGTACTGACAggggaa                                         >  1:45759/1‑141 (MQ=255)                                                                                                           gcgcggTCGTCGGTTAAGTCGTTTTCGGAAAAATAAACGCCGTCTGCGCGAGCGTTTGCGTCAGCGTATTTTTTTGAGAGATAAAGTGGTGCCGGAAGCAATGGAAAAACCAAGAGTACTCGTACTGACAGGGGCAGGAAttt                                  <  2:649352/139‑1 (MQ=255)                                                                                                                        ttAAGTCGGTTTCGTAATAAGAGTGGCCGCCTGGGCGAGCGTTTGCGTCAGCGTAGTTTTTTCAGAGATAAAGTGGTGCCGGAAGCAATGGAAAAACCAAGAGTACTCGTACTGACAGGGGCAGGAATTTCTGCGGAATCAgg                     <  2:194643/143‑1 (MQ=255)                                                                                                                             tCGTTTTCGTAAAAATAAACGCCGCCTGCGCGAGCGTTTGCGTCAGCGTATTTTTTTCAGAGATAAAGTGGTGCCGGAAGCAATGGAAAAACCAAGAGTACTCGTACTGACAGGGGCAGGAATTTCTGCGGAATCAGGTATTc                >  1:92397/1‑143 (MQ=255)                                                                                                                                 tttCGGAAAAATATACGCCGCCTGCGCGAGCGGTTGCGTCAGCGTGTTTTTTTCAGAGATAAAGTGGTGCCGGAAGCAATGGAAAAACCAAGAGTACTCGTACTGACAGGGGCAGGAATTTCTGCGGAATCAGGTATTCGTAc            <  2:190075/143‑1 (MQ=255)                                                                                                                                     gTAAAAATAGACGCCGCCTGCGCGAGCGTTTGCGTCAGCGTATTTTTTTCAGAGATAAAGTGGTGCCGGACGCACTGGAAAAACCAAGAGTACTCGTACTGACAGGGGCAGGAATTTCTGCGGAATCAGGTATTCGTACCttt        <  2:352779/143‑1 (MQ=255)                                                                                                                                     gTAAAAATAAACGCCGCCTGCGCGAGCGTTTGCGTCAGCGTATTTTTTTCAGAGATAAAGTAGTGCCGGAAGCAATGGAAAAACCAAGAGTACTCGTACTGACAGGGGCAGGAATTTCTGCGGAATACGGTATGCGTACCctt        >  2:464246/1‑143 (MQ=255)                                                                                                                                          aaTAAACGCCGCCTGCGCGAGCGTTTGCGTCAGCGTATTTTTTTCAGAGCTACAGTGGTGCCCGAAGCAATGGACACACCAAGAGTACTCGTACTGACAGGGGCAGGAATTTCTGCGGCATCAGCTCTCCGTACCTTTCgcgc   >  2:105053/1‑143 (MQ=255)                                                                                                                                           aTAAACGCCGCCTGCGCGAGCGTTTGCGTCAGCGTATTTTTTTCAGAGATAAAGTGGTGCCGGAAGCAATGGAAAAACCAAGAGTACTCGTACTGACAGGGGCAGGAATTTCTGCGGAATCAGGTATTCGTACCTTTCGcgcc  >  2:274346/1‑143 (MQ=255)                                                                                                                                             |                                                                                                                                             GTGTTCCGCGCATTGAACGCGCGCGCCACGGTGATGCGGGAGGAATGCGTGGTGCGGCCTTCCTACATCTAACCGATTAAACAACAGAGGTTGCTATGCTGTCGCGTCGGGGTCATCGGTTAAGTCGTTTTCGTAAAAATAAACGCCGCCTGCGCGAGCGTTTGCGTCAGCGTATTTTTTTCAGAGATAAAGTGGTGCCGGAAGCAATGGAAAAACCAAGAGTACTCGTACTGACAGGGGCAGGAATTTCTGCGGAATCAGGTATTCGTACCTTTCGCGCC  >  NC_000913/1179425‑1179705

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.