New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 1207790 =4 (0.100)29 (0.810) 28/250 0.3 84.6% coding (290/630 nt) stfP e14 prophage; uncharacterized protein
?NC_000913 1209619 = 7 (0.200)pseudogene (1/501 nt) stfE pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related

TGGTGGAGGCATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCC  >  NC_000913/1207649‑1207932
                                                                                                                                             |                                                                                                                                              
tggtggAGGCATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTT                                                                                                                                               <  1:673867‑M1/143‑1 (MQ=255)
tgcacagttcagcgcattacgttgtagatctgtgttctggtcatttgttgatacgcgtacatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcatgttatttattcattttcataaacgta                                                                                                                                               <  2:228768‑M1/2‑2 (MQ=255)
 ggtggAGGCGTCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGTGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTG                                                                                                                                              <  1:597367‑M1/143‑1 (MQ=255)
 gcacagttcagcgcattacgttgtagatctgtgttctggtcatttgttgatacgcgtacatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTg                                                                                                                                              <  2:568899‑M1/3‑1 (MQ=255)
 gcacagttcagcgcattacgttgtagatctgtgttctggtcatttgttgatacgcgtacatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTg                                                                                                                                              >  1:390774‑M1/141‑143 (MQ=255)
      gttcagcgcattacgttgtagatctgtgttctggtcatttgttgatacgcgtacatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTg                                                                                                                                         >  1:262609‑M1/136‑143 (MQ=255)
        gCATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCCCTCGAAAACCATGGTTTGGG                                                                                                                                       >  2:730896‑M1/1‑143 (MQ=255)
         cagcgcattacgttgtagatctgtgttctggtcatttgttgatacgcgtacatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGga                                                                                                                                      >  1:660145‑M1/133‑143 (MQ=255)
          gtcCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAG                                                                                                                                     <  1:327281‑M1/142‑1 (MQ=255)
           tCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCCAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAACCCTTGGTTTGGGAGA                                                                                                                                    >  1:556722‑M1/1‑143 (MQ=255)
            ccGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAA                                                                                                                                   <  2:523079‑M1/143‑1 (MQ=255)
             ggattacgttgtagatctgtgttctggtcatttgttgatacgcgtacatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAg                                                                                                                                  >  1:646009‑M1/129‑143 (MQ=255)
              ggTGCCCGCCTGGCGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGG                                                                                                                                 <  2:263365‑M1/143‑1 (MQ=255)
               attacgttgtaaatctgtgttctggtcatttgttgatacgcgtacatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGa                                                                                                                                >  1:587609‑M1/127‑143 (MQ=255)
                ttacgttgtagatctgtgttctggtcatttgttgatacgcgtacatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAg                                                                                                                               <  1:540115‑M1/18‑1 (MQ=255)
                   cAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctg                                                                                                                            >  1:468701‑M1/1‑138 (MQ=255)
                    aGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgc                                                                                                                           <  2:97330‑M1/143‑7 (MQ=255)
                     ttgtagatctgtgttctggtcatttgttgatacgcgtacatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataagcgTTGGTTTGGGAGAAGGAGCaaaa                                                                                                                          <  2:454586‑M1/23‑1 (MQ=255)
                      tggagatctgtgttctggtcatttgttgctacgcgtacatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAAc                                                                                                                         >  2:14389‑M1/120‑143 (MQ=255)
                             aaGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGAGATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCGTGGTTTGGGAGAAGGctctgcgttacctgt                                                                                                                  >  1:105721‑M1/1‑128 (MQ=255)
                              aGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgtt                                                                                                                 <  1:497424‑M1/143‑17 (MQ=255)
                                gggCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTCAGTTTGGGAGAAGGctctgcattacctgttgg                                                                                                               >  1:494188‑M1/1‑125 (MQ=255)
                                 gttctggtcatttgttgatacgagtacatcgccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCTAAACTCAATgcagca                                                                                                              >  2:617953‑M1/109‑143 (MQ=255)
                                 ggcggcACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggt                                                                                                              <  1:486195‑M1/143‑20 (MQ=255)
                                 gccggcacGACCTGGTACTTACTGGACGTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggt                                                                                                              <  2:586191‑M1/141‑20 (MQ=255)
                                  ttctggtcatttgttgatacgcgtacatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCaa                                                                                                             <  1:287957‑M1/36‑1 (MQ=255)
                                  gcggcACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtg                                                                                                             >  2:181743‑M1/1‑123 (MQ=255)
                                   cggcACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAACTCGGATGGCACTGTGCAAACGGCCCTCGACAACCCCGGTTTGGGAGCAGGctctgcattacctgcaggtgt                                                                                                            >  1:146566‑M1/1‑122 (MQ=255)
                                     tgctcattggttaatacgtgtacagagtcaataagcatgttaaatcccccttgtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGGTTGGGAGAAGGAGCAAAACTCAATGCAGCAACgg                                                                                                          >  2:467821‑M1/105‑143 (MQ=255)
                                     gcACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGGGAAGGctctgcattacctgttggtgtcc                                                                                                          >  1:541419‑M1/1‑120 (MQ=255)
                                     gcACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCGCGCAAACCATGGTTTAGGAGAAGGctctgcattacctgagggtgtcc                                                                                                          >  2:589279‑M1/1‑120 (MQ=255)
                                       aCGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccg                                                                                                        <  1:119999‑M1/143‑26 (MQ=255)
                                          attggtagacacgcgtacatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACa                                                                                                     >  1:239480‑M1/100‑143 (MQ=255)
                                              gttgatacgcgtacatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttctttcttcattttcataaacgTGGGTTTGGGAGAAGGGGAAAAAATCAATGCAGCAaaggctaactctg                                                                                                 <  2:93111‑M1/48‑7 (MQ=255)
                                               ttgatacgcgtacatatccaatgagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcatgaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAgg                                                                                                >  2:305959‑M1/95‑143 (MQ=255)
                                               ttgatacgcgtacagagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAgg                                                                                                >  2:379709‑M1/95‑143 (MQ=255)
                                                 actcacCGCACTTCGCGCGCTGCTATAAAAATTCAATATGCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggc                                                                                              <  1:691002‑M1/143‑36 (MQ=255)
                                                  cttacCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggcc                                                                                             <  1:266685‑M1/143‑37 (MQ=255)
                                                    tacCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggcctt                                                                                           <  1:181743‑M1/143‑39 (MQ=255)
                                                        gCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAGTGCAGCAACGGCTACCTTAGGACGCGCCgg                                                                                       >  1:178366/1‑143 (MQ=255)
                                                        gCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCgg                                                                                       >  1:173888/1‑143 (MQ=255)
                                                           catggccgataaccatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGttt                                                                                    >  2:343095‑M1/83‑143 (MQ=255)
                                                            ttCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccact                                                                                   >  1:59668‑M1/1‑97 (MQ=255)
                                                            ttCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccact                                                                                   >  1:723683‑M1/1‑97 (MQ=255)
                                                             tagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgtgatttcttcattttcataaacgTTGGTTTGGGAGAACGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCa                                                                                  <  1:535910‑M1/63‑1 (MQ=255)
                                                              cgcgcgcgGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccaatcc                                                                                 <  1:538782‑M1/143‑49 (MQ=255)
                                                              cgcgcgCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactcc                                                                                 <  1:538822‑M1/143‑49 (MQ=255)
                                                                ccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGCGCTAAACTCCATGCAGCAACGGCTACATTATGACGCACCGGTTTCATAg                                                                               <  2:404949‑M1/66‑1 (MQ=255)
                                                                 caataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTATGACGcacgggtttttcttt                                                                              <  1:528730‑M1/67‑7 (MQ=255)
                                                                   ataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCta                                                                            <  1:324410‑M1/69‑1 (MQ=255)
                                                                            ttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgGTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTa                                                                   <  1:460946‑M1/78‑1 (MQ=255)
                                                                            aggccGCAAGAATGCGTGTGGCGGTATCACGTCGGAGGGCACTGTGCAACCGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggc                                                                   <  2:206382‑M1/141‑63 (MQ=255)
                                                                            aaGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggc                                                                   >  1:639873‑M1/1‑81 (MQ=255)
                                                                                cGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttccgccactccgccaacacgctggctgca                                                               >  2:533666‑M1/1‑77 (MQ=255)
                                                                                 gCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaa                                                              <  1:153370‑M1/143‑68 (MQ=255)
                                                                                 gCAAGAAGCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaa                                                              <  1:174785‑M1/143‑68 (MQ=255)
                                                                                  cccccttgtaaaggcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATtg                                                             >  2:633734‑M1/60‑143 (MQ=255)
                                                                                    ccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATtggt                                                           >  1:324561‑M1/58‑143 (MQ=255)
                                                                                      tgtccGTTCGGCGCTAGCGGATGGGATGGCACTGTGCGAACGGCGCTCGAAAACCTTGGTTTGGGAGAAGGctctgcagtacctgttggtgtcccggttccgtggccttcagccactcccccaccaggctggctgaaatgcaa                                                         <  2:379877‑M1/141‑73 (MQ=255)
                                                                                           gTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctatgcattacgtgttggtgtcccggttccgtggccttcagccactccgccaacaagctgccagaaatgcaaaggtg                                                    >  2:71337‑M1/1‑66 (MQ=255)
                                                                                           gTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTg                                                    <  1:242716/143‑1 (MQ=255)
                                                                                           aaaagcaggaatgatgccatttgcttgttatttccgcattttcataaacgGTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTg                                                    >  1:566863‑M1/51‑143 (MQ=255)
                                                                                            tttGGCGATATCAAAGCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaatgcaatggtgc                                                   <  1:392591‑M1/143‑79 (MQ=255)
                                                                                            aaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTCTTGa                                                   <  2:60510‑M1/94‑1 (MQ=255)
                                                                                              agcaggaatgatgccctttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGc                                                 >  1:454586‑M1/48‑143 (MQ=255)
                                                                                               cgcGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAGCCTTGGTTTGGGAGAGGGctctgcattacctgttggtgtctcggttccgtggccttcagccactccgccaacaggctggctgaaatgcaatggtgccgc                                                <  2:361026‑M1/142‑82 (MQ=255)
                                                                                                 atgaattatgccagttgcttggtattgcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAAGGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAAt                                              >  1:295156‑M1/45‑143 (MQ=255)
                                                                                                   atatCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtgccggttccgtggccttcagccactccgccaacaggcgggctgaaatgcaatggtgccgcttat                                            >  1:566088‑M1/1‑58 (MQ=255)
                                                                                                       gatgccacttgcttgttatttcttcatcttcataaacgTTGGGTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTATGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTaa                                        >  1:90372‑M1/39‑143 (MQ=255)
                                                                                                        aaaTCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaatgcaatggtgccgctttttctgc                                       >  1:341459‑M1/1‑53 (MQ=255)
                                                                                                            cGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacccgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaatgcaatggtgccgctttttctgctgaa                                   <  1:198269‑M1/143‑95 (MQ=255)
                                                                                                              gATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGATTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTCTTGGGCAATCAGTAATCATTCa                                 >  1:267969/1‑143 (MQ=255)
                                                                                                                  cttgttatttcttcattttcctaaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGTTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTgg                             >  2:451735‑M1/28‑143 (MQ=255)
                                                                                                                   ttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCATGCAGTAATCATTCAGTggg                            <  1:19192‑M1/117‑1 (MQ=255)
                                                                                                                   cACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaatgcaatggtgccgctttttctgctgaagaatacc                            >  1:152843‑M1/1‑42 (MQ=255)
                                                                                                                     cTGTGCAAACGGCTCTCGAAAACCTTGGTTGGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaatgcaatggtgccgctttttctgctgaagaatacccg                          >  1:484808‑M1/1‑40 (MQ=255)
                                                                                                                     cTGTGACAACGGCCCGCGAAAACCTTGGTGTGGGAGATGGctctgcagtaccggttggtgtcccggttccgtggccttcagccactccgccaacatgctggctgaaatgcaatggtgccgctttttctgctgaagaatacccg                          <  1:688852‑M1/143‑104 (MQ=255)
                                                                                                                        tgCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccacgccgccaaccggctcgcagaaatgcaatggtgccgccttttctgctgaagaatacacgaaa                       >  2:350546‑M1/1‑37 (MQ=255)
                                                                                                                        tgCAAACGGCGCGCGAAAACCGTGGTTTGGGAGAAGGctctgcaccacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaatgcaatggtgccgctttttctgctgaagaatacccggaa                       <  1:100521‑M1/143‑107 (MQ=255)
                                                                                                                           cgacgGCTCGCGAAAACCGTGGTGCGGGAGAAGGctgtgcattccctggtggtgtcccggttccgtggccttcagccaccccgccaacaggctggctgaaatgcaatggtgccgctttttctgctgaagcatacccggaactg                    <  1:63107‑M1/141‑110 (MQ=255)
                                                                                                                           aaaCGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgacatgccatggcgccgcctttcctgcagaggaatcccccgaagtg                    >  2:730417‑M1/1‑34 (MQ=255)
                                                                                                                            aaCGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccgcaccgccaacaggctggctgaaatgcaatggtgccgctttttctgctgaagaatacccggaactgg                   <  1:657320‑M1/143‑111 (MQ=255)
                                                                                                                            aaCGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctatgcattacctgagggtgtcccggttccgtggccttcagcccctgcggcaacaggctggcctaaatgcgatggtgctgctttttctgccgcagaatacccggaactgg                   >  2:294021‑M1/1‑33 (MQ=255)
                                                                                                                             ttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGc                  <  2:531538‑M1/127‑1 (MQ=255)
                                                                                                                               ggCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaatgcaatggtgccgctttttctgctgaagaatacccggaactggcaa                <  1:322301‑M1/143‑114 (MQ=255)
                                                                                                                                    tcataaacgTTTGTTTGGGAGAAGGAGCAATACTTAGTGCAGGAACGGCTACATGAGGACGCACCGGTTTCATAGCTATAACGGTTATGATTGGGGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCaaaa           >  1:454242‑M1/10‑143 (MQ=255)
                                                                                                                                    tcGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaatgcaatggtgccgctttttctgctgaagaatacccggcactggcaaaggcc           >  2:120657‑M1/1‑25 (MQ=255)
                                                                                                                                     cataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCcgcaaggg          <  1:527101‑M1/135‑4 (MQ=255)
                                                                                                                                           ccTTGGGTTCGGAGAAGGctctgcattacctgcgtgtggcccggttccgtggccttcagccactccgccaacaggctggctgaaatgcaatggtgccgctttttctgctgaagaatacccggaactggcaaaggcttatccga    <  2:349691‑M1/143‑126 (MQ=255)
                                                                                                                                             ttGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagacagcccgtcaacaggctggctgaaatgcaatggtgccgctttttctgctgaagaataccaggaactggcaaaggcttatccgaca  >  1:199432‑M1/1‑16 (MQ=255)
                                                                                                                                             |                                                                                                                                              
TGGTGGAGGCATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCC  >  NC_000913/1207649‑1207932

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.