New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1726509	27 (0.670)	3 (0.080)	3/272	6.0	10.0%	coding (487/600 nt)	nemR	transcriptional repressor for the nemRA‑gloA operon, quinone‑, glyoxal‑, and HOCl‑activated
	?	NC_000913	= 1726514	28 (0.720)					coding (492/600 nt)	nemR	transcriptional repressor for the nemRA‑gloA operon, quinone‑, glyoxal‑, and HOCl‑activated
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

AAGATATGCGCAGCGCGATGGATAAAGGTGCTCGCGGCGTGATCGCCCTGCTCTCTCAGGCGCTGGAAAATGGCCGTGAGAACCATTGTTTAACCTTTTGTGGCGAACCGCTGCAACAGGCACAAGTGCTTTACGCACTGTGGCTTGGCGCGAATCTGCAGGCCAAAATTTCGCGCAGTTTCGAGCCACTGGAAAACGCGCTGGCCCATGTAAAAAACATTATTGCGACGCCTGCCGTTTAGCAGGCATTTTTTATCACCAGAC  >  NC_000913/1726381‑1726644                                                                                                                                 |                                                                                                                                        aagaTATGCGCAGCGCGATGGATAAAGGTGCTCGCGGCGTGATCGCCCTGCTCTCTCAGGCGCTGGAAAATGGCCGTGAGAACCATTGTTTAACCTTTTGTGGCGAACCGCTGCAACAGGCACAAGTGCTTTACGCACTGTgg                                                                                                                           <  1:86650/143‑1 (MQ=255)     tatGCGCAGCGCGATGGATAAAGGGGCTCGCGGCGTGATCGCCCTGCTCTCTCAGGCGCTGGAAAATGGCCGTGAGAACCATTGTTTAACCTTTTGTGGCGAACCGCTGCAACAGGCACAAGTGCTTTACGCACTGTGGCTTg                                                                                                                       <  1:708408/143‑1 (MQ=255)       tGCGCAGCGCGATGGATAAAGGTGCTCGCGGCGTGATCGCCCTGCTCTCTCAGGCGCTGGAAAATGGCCGTGAGAACCATTGTTTAACCTTTTGTGGCGAACCGCTGCAACAGGCACCAGTGCTTTACGCACTGTGGCTCGgc                                                                                                                     >  2:105331/1‑143 (MQ=255)                  aTGGATACATGTGCTCGCGGCGTGCTCGCCCTGCTCTCTCAGGCGCTGGAAAATGGCCGTGAGACCCATTGTTTAACCTTTTGTGGCGAACCGCTGCAACAGGCACAAGTGCTTTACGCACTGTGGCTTGGCGCGAATCTGCa                                                                                                          <  2:178307/143‑1 (MQ=255)                   tGGATAAAGGTGCTCGCGGCGTGATCGCCCTGCTCTCTCAGGCGCTGGAAAATGGCCGTGAGAACCATTGTTTATCCTTTTGTGGCGAACCGCTGCAACAGGCACAAGTGCTTTACGCACTGTGGCTTGGCGCGAATCTGCAg                                                                                                         <  2:104404/143‑1 (MQ=255)                   tGGATAAAGGTGCGCGCGGCGTGATCGCCCTGCTCTCTCAGGCGGTGGAAAATGGCCGTGAGAACCATTGGTTAACCTTTTGTGGCGAACCGCTGCAACAGGCACAAGTGCTTTACGCACTGTGGCTTGGCGCGAATCTGCAg                                                                                                         <  2:620486/143‑1 (MQ=255)                       tAAAGGTGCTCGCGGCGTGATCGCCCTGCTCTCTCAGGCGCTGGAAAATGGCCGTGAGAACCATTGTTTAACCTTTTGTGGCGAACCGCTGCAACAGGCACAAGTGCTTTACGCTCTGTGGCTTGGCGCGAATCTGCAGGCCa                                                                                                     >  1:494196/1‑143 (MQ=255)                          aGGTGCTCGCGGCGGGATCGCCCTGCTCTCTCAGGCGCTGGAAAATGGCCGTGAGAACCATTGTTTAACCTTTTGTGGCGAACCGCTGCAACAGGCACAAGTGCTTTACGCACTGTGGCTTGGCGCGAATCTGCAGGCCaaaa                                                                                                  <  1:282339/143‑1 (MQ=255)                               cTCGCGGCGTGATCGCCCTGCTCTCTCAGGCGCTGGCAAATGGCCGTGAGAACCATTGTTTAACCTTTTGTGGCGAACCGCTGCAACAGGCACAAGTGCTTTACGCACTGTGGCTTGGCGCGAATCTGCAGGCCAAAATTTcg                                                                                             <  2:649782/143‑1 (MQ=255)                                 cgcgGCGTGATCGCCATGCTCTCTCAGGCGCTGGAAAATGGCCGTGAGAACCATTGTTTAACCTTTTGTGGCGAACCGCTGCAACAGGCACAAGTGCTTTACGCACTGTGGCTTGGCGCGAAACGGCAGGCCAAACATTcgcg                                                                                           >  2:104700/1‑143 (MQ=255)                                                     ctctcAGGCGCTGGAAAATGGCCGTGAGAACCATTGTTTAACCTTTTGTGGCGAACCGCTGCAACAGGCACAAGTGCTTTACGCTCTGTGGCTTGGCGCGAATCTGCAGGCCAAAATTTCGCGCAGTTTCGAGCCACTGGaaa                                                                       <  1:399668/143‑1 (MQ=255)                                                      tctcAGGCGCTGGAAAATGGCCGTGAGAACCATTGTTTAACCTTTTGTGGCGAACCGCTGCAACAGGCACAAGTGCTTTACGCACTGTGGCTTGGCGCGAATCTGCAGGCCAAAATTTCGCGCAGTTTCGAGCCACTGGaaag                                                                      >  2:377151/1‑142 (MQ=255)                                                            gcgcTGGAAAATGGCCGTGAGAACCATTGTTTAACCTTTTGTGGCGAACCGCTGCAACAGGCACAAGTGCTTTACGCACTGTGGCTTGGCGCGAATCTGCAGGCCAAAATTTCGCCCAGCTTCGAGCCACTGGCAAACGCGCt                                                                >  2:447741/1‑143 (MQ=255)                                                               cTGGAGAAGGGCCGTGAGAACCATTGTTTAGCCTTGTGTGGCGAACCGCGGCACCAGGCACAAGTGCTTTACGCACTGTGGCTTGGCGCGAATCTGCAGGCCAAAATTTCGCGCAGTTTCGAGCCACTGGAAAACGCGCTGGc                                                             <  2:729967/143‑1 (MQ=255)                                                                              gagaACGAGTGTTTGACCTTTTGTGGCGAACCGCTGCAACAGGCACAAGTGCTGTACGCACTGTGGCTTGGCGCGAATCTGCAGGCCAAAATTTCGCGCAGTTTCGAGCCACTGGAAAACGCGCTGGCCCATGTAAAAAACat                                              <  1:602375/143‑1 (MQ=255)                                                                              gagaACCATTGTTTAACCTTTTGTGGCGAACCGCTGCAACAGGCACAAGTGCTTTACGCACTGTGGCTTGGCGCGAATCTGCAGGCCAAAATTTCGCGCAGTTTCGAGCCACTGGAAAACGCGCTGGCCCATGTAAAAAACat                                              >  2:382526/1‑143 (MQ=255)                                                                                    cATTGTTTAACCTTTTGTGGCGAACCGCTGCAACAGGCACAAGTGCTTTACGCACTGTGGCTTGGCGCGAATCTGCAGGCCAAAATTTCGCGCAGTTTCGAGCCACTGGAAAACGCGCTGGCCCATGTAAAAAACATTATTGc                                        <  1:19894/143‑1 (MQ=255)                                                                                                ttttGTGGCGAACCGCTGCAACAGGCACAAGTGCTTTACGCACTGTGGCTTGGCGCGAATCTGCAGGCCAAAATTTCGCGCAGTTTCGAGCCACTGGAAAACGCGCTGGCCCATGTAAAACACGGTTTTGCGCCGTCTGCCgc                            >  1:161555/1‑142 (MQ=255)                                                                                                 tttGTGGCTGACCGCTGCACCAGCCACAAGTGCTTTACGCACTCTGGCTTGGCGCGAATCTGCAGGCCAAAATTTCGCGCAGTTTCGAGCCACTGGAACACGAGCTGGCCCATGTAAAAAACATTATTGCGACGCCTGCCGtt                           <  2:335813/143‑1 (MQ=255)                                                                                                               cTGCAACAGGCACAAGTGCTTTACGCACTGTGGCTTGGCGCGAATCTGCAGGCCAAAATTTCGCGCAGGTTCGAGCCACTGGAAAACGCGCTGGCCCATGTAAAAAACAAGAGTGCGACGCCTGCCGGTTAGCAGGCagtggt             >  1:226901/1‑138 (MQ=255)                                                                                                                 gCACCAGTCACAATTGCTTTACGCACTGTTGCTTGGCGCGAATCTGCAGGCCAAAATTTCGCGCAGTTTCGAGCCACTGGAAAACGCGCTGGCCCATGTAAAAAACATTATTGCGACGCCTGCCGTTTAGCAGGCATTTTTTa           <  1:45212/143‑1 (MQ=255)                                                                                                                  cAACAGGCACAAGTGCTTTACGCACTGTGGCTTGGCGCGAATCTGCAGGCCAAAATTTCGCGCAGTTTCGAGCCACTGGAAAACGCGCTGGCCCATGTAAAAAACATTATTGCGACGCCTGCCGTTTAGCAGGCATTTTTTAt          <  1:660360/143‑1 (MQ=255)                                                                                                                   aaCAGGCACAAGGGCTTTACGCCCTGGGGCTTGCCGCGAATCTGCAGGCCAAAATTTCGCGCAGTTTCGAGCCACTGGAAAACGCGCTGGCCCATGTAAAAAACATTATTGCGACGCCTGCCGTTTAGCAGGCATTTTTTATc         <  2:368102/143‑1 (MQ=255)                                                                                                                     cAGGCACAAGGGCTTTACGCACTGTGGCGTGGCGCGAATCTGCAGGCCAAAATTTCGCGCAGTTTCGAGCCACTGGAAAACGCGCTGGCCCATGTAAAAAACATTATTGCGACGCCTGCCGTTTAGCAGGCATTTTTTATCAc       <  1:240498/143‑1 (MQ=255)                                                                                                                         cacaAGTGCTTTACGCACTGTGGCTTGGCGCGAATCCGCAGGCCAAAATTTCGCGCAGTTTCGAGCCACTGGAAAACGCGCTGGCCCATGTAAAAAACATTATTGCGACGCCTGCCGTTTAGCAGGCATTTTTTATCACCAga   >  1:471481/1‑143 (MQ=255)                                                                                                                          acaATTGCTTTACGCACTGTGGCTCGGCGCGAACCTGCAGGCCAAAATTTCGCGCAGTTTCGAGCCACTGGAAAACGCGCTGGCCCATGTAAAAAACATTATTGCGACGCCTGCCGTTTAGCAGGCATTTTTTATCACCAgac  <  1:585898/143‑1 (MQ=255)                                                                                                                          acaAGTGCTTTACGCACTGTGGCTTGGCGCGAATCTGCAGGCCAAAATTTCGCGCAGTTTCGAGCCACTGGAAAACGCGCTGGCCCATGTAAAAAACATTATTGCGACGCCTGCCGGTTAGCAGGCATTTGTTATGACCAgac  >  1:549424/1‑143 (MQ=255)                                                                                                                                 |                                                                                                                                        AAGATATGCGCAGCGCGATGGATAAAGGTGCTCGCGGCGTGATCGCCCTGCTCTCTCAGGCGCTGGAAAATGGCCGTGAGAACCATTGTTTAACCTTTTGTGGCGAACCGCTGCAACAGGCACAAGTGCTTTACGCACTGTGGCTTGGCGCGAATCTGCAGGCCAAAATTTCGCGCAGTTTCGAGCCACTGGAAAACGCGCTGGCCCATGTAAAAAACATTATTGCGACGCCTGCCGTTTAGCAGGCATTTTTTATCACCAGAC  >  NC_000913/1726381‑1726644

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.