| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1207805 | 4 (0.100) | 43 (1.200) | 38/250 | 0.0 | 89.1% | coding (305/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | = 1209602 | 7 (0.200) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
GCAATTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACG > NC_000913/1209466‑1209740 | gCAATTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGACGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttct < 2:655549‑M2/143‑7 (MQ=255) cAATTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACCGGTAATGCCGAGccttctc < 1:42958‑M2/143‑8 (MQ=255) cAATTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctc < 2:59668‑M2/143‑8 (MQ=255) tttatttGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAAGGCAGACcctcctccca < 2:726710‑M2/143‑11 (MQ=255) ttGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaacca < 1:402006‑M2/143‑16 (MQ=255) tGTCGGATAAGCCTTTGCCAGTTCCTGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGACGGGCTGTCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaa > 1:199432‑M2/1‑127 (MQ=255) tCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGCCACACGCAGGTAATGCAGAGccttctccgaacccaagg < 2:349691‑M2/143‑19 (MQ=255) ggcCTTTGCCAGTGCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcga > 2:120657‑M2/2‑118 (MQ=255) tttGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGAGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCCTCTCCCAAACCAACGCTGATGaacac > 2:304390/1‑140 (MQ=255) ttGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagcc < 1:322301‑M2/143‑31 (MQ=255) tGCCAGTGCCGGGTATGCTGCCGCAGAGAAAGCGGCACCATGGCATTTCAGCCAGCCTGGTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATga < 2:642921/143‑1 (MQ=255) ccAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGTGCGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtt < 1:657320‑M2/143‑34 (MQ=255) ccAGTTCCGGGTATTCTGCGGCAGAAAAAGCAGCACCATCGCATTTAGGCCAGCCTGTTGCCGCAGGGGCTGAAGGCCACGGAACCGGGACACCCTCAGGTAATGCATAGccttctcccaaaccaaggttttcgagagccgtt > 2:294021‑M2/1‑110 (MQ=255) cAGTTCCGGGTATGCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGGGTGGCTGAAGGCCACGGAACCGGGACACCACCAGGGAATGCACAGccttctcccgcaccacggttttcgcgagccgtcg < 1:63107‑M2/143‑35 (MQ=255) cACTTCGGGGGATTCCTCTGCAGGAAAGGCGGCGCCATGGCATGTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgttt > 2:730417‑M2/1‑109 (MQ=255) tttCGTGTATTCTTCAGCAGAAAAGGCGGCACCATTGCATTTCTGCGAGCCGGTTGGCGGCGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgca > 2:350546‑M2/1‑106 (MQ=255) ttCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTGGTGCAGAGccttctcccaaaccacggttttcgcgcgccgtttgca < 1:100521‑M2/143‑38 (MQ=255) cGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctccccaaccaaggttttcgagagccgtttgcacag > 1:484808‑M2/1‑103 (MQ=255) cGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCATGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACCGGTACTGCAGAGccatctcccacaccaaggttttcgcgggccgttgtcacag < 1:688852‑M2/143‑41 (MQ=255) ggTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtg > 1:152843‑M2/1‑101 (MQ=255) ttcAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACGGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccg < 1:198269‑M2/143‑50 (MQ=255) ttcAGCAGAAAAAGCGGCACCATTGCATGGCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAAGCGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATg < 1:81579/143‑1 (MQ=255) gcagAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgattt > 1:341459‑M2/1‑90 (MQ=255) ataagcGGCACCATTGCATTTCAGCCCGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGCACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatat > 1:566088‑M2/3‑85 (MQ=255) gCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGAGACACCAACAGGTAATGCAGAGccctctcccaaaccaaggctttcgagagccgtttgcacagtgccatccgatttgatatcgcg < 2:361026‑M2/143‑63 (MQ=255) gCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgctttgatatcgccaaa < 1:392591‑M2/143‑66 (MQ=255) cACCTTTGCATTTCTGGCAGCTTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACACGTAATGCATAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaac > 2:71337‑M2/1‑77 (MQ=255) aCCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTGATGAAACGGAAGAAATAACAAGCAAATGGCATCATTCCTGCtttca > 2:428491/1‑141 (MQ=255) ttGCATTTCAGCCAGCCTGGTGGGGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTACTGCAGAGccttctcccaaaccaaggttttcgagcgccgttcgcacagtgccatcccatccgctagcgccgaacggaca < 2:379877‑M2/143‑72 (MQ=255) tttCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggcttcttgc < 1:174785‑M2/143‑77 (MQ=255) tttCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgc < 1:153370‑M2/143‑77 (MQ=255) tgcagccagcgtGTTGGCGGAGTGGCGGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcg > 2:533666‑M2/3‑66 (MQ=255) gccagccTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggctt > 1:639873‑M2/1‑62 (MQ=255) gccagccTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccggttgcacagtgccctccgacgtgataccgccacacgcattcttgcggcct < 2:206382‑M2/143‑82 (MQ=255) gCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTgg < 1:587359/143‑1 (MQ=255) ggATTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagccgcgcgcg < 1:538782‑M2/143‑96 (MQ=255) ggAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcg < 1:538822‑M2/143‑96 (MQ=255) aGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaa > 1:723683‑M2/1‑46 (MQ=255) aGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaa > 1:59668‑M2/1‑46 (MQ=255) aaGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggta < 1:181743‑M2/143‑106 (MQ=255) ggCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaag < 1:266685‑M2/143‑108 (MQ=255) gCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggcatattgaatttttatagcagcgcgcgaagtgcggtgagt < 1:691002‑M2/143‑109 (MQ=255) cGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaagtaactggtcgt < 1:119999‑M2/143‑119 (MQ=255) ggACACCCTCAGGTAATGCAGAGccttctcctaaaccatggtttgcgcgagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaagtaactggtcgtgc > 2:589279‑M2/1‑23 (MQ=255) ggACACCACCAGGTCATGCAGAGCCTGCTCCCAACCCCCCGTTCATGAAAATGAAGAAATAACAAGCAACTGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCa < 1:726710/143‑1 (MQ=255) ggACACCAACAGGTAATGCAGAGccttcccccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaagtaactggtcgtgc > 1:541419‑M2/1‑23 (MQ=255) acacCTGCAGGTAATGCAGAGcctgctcccaaaccggggttgtcgagggccgtttgcacagtgccatccgagttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaagtaactggtcgtgccg > 1:146566‑M2/1‑21 (MQ=255) cacCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaagtaactggtcgtgccgc > 2:181743‑M2/1‑20 (MQ=255) cacCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGaa < 1:313962/143‑1 (MQ=255) acCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgacgtccagtaagtaccaggtcgtgccggc < 2:586191‑M2/143‑125 (MQ=255) acCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaagtaactggtcgtgccgcc < 1:486195‑M2/143‑125 (MQ=255) ccAACAGGTAATGCAGAGccttctcccaaactgaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaagtaactggtcgtgccgccc > 1:494188‑M2/1‑18 (MQ=255) aaCAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaagtaactggtcgtgccgcccct < 1:497424‑M2/143‑128 (MQ=255) aCAGGTAACGCAGAGccttctcccaaaccacggttttcgagagccgtttgcacagtgccatccgatttgatctcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaagtaactggtcgtgccgcccctt > 1:105721‑M2/1‑15 (MQ=255) gCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaagtaactggtcgtgccgccccttctccaggct < 2:97330‑M2/143‑138 (MQ=255) cAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaagtaactggtcgtgccgccccttctccaggctg > 1:468701‑M2/1‑5 (MQ=255) | GCAATTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACG > NC_000913/1209466‑1209740 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |