New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	4363384 =	44 (0.790)	4 (0.080)	4/264	7.9	7.4%	coding (1659/1698 nt)	dsbD	thiol:disulfide interchange protein and activator of DsbC
	?	NC_000913	4363422 =	58 (1.110)					coding (1621/1698 nt)	dsbD	thiol:disulfide interchange protein and activator of DsbC
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TGGTGTTGGCAATCCCTTGTAATTCTAATAATTTCAGGGCTTCTCCCAGTACATCTTCACGTTGCACGCTATTTTCCTCCGTCTTTCCCACTGCAAGTGTCGTTCACGGTTGGCGATCGCGCAAATGTGCGCTGAAGGTTTCAGCATCCATAAAGCCCGTGACGCGTGCTTGTGGATGCTCCTGGCCTTGTCCGTCAAAAAAGAGAATTGTCGGTAGGCCAAGGACATTAAGATGCTTTAACAGCGCCACATCTTGTGCGTCGTTGGCCGTGACGTTGGCCTGAA  >  NC_000913/4363242‑4363526                                                                                                                                               |                                                                                                                                               cggtgTTGGCAATTCCTTGTAATTCTAAGAATTTCAGGGCTTCTCCCAGTACATCTTCACGTTGCACGCTATTTTCCTCCGTCTTTCCCACTGCAAGTGTCGTTCACGGTTGGCGATCGCGCAAATGTGCGCTGAAGGTTTCa                                                                                                                                                <  2:461242/142‑1 (MQ=255)      ttGGCAATCCCTTGTCAGTCTAATAATTTCACGCCTTCTCCCACTACATCTTCACGTTGCACGCTATTTTCCTCCGTCTTGCCCACTGCAAGTGTCGTTCACGGTTGGCGATCGCGCAAATGTGCGCTGAAGGTTTCAGCATc                                                                                                                                           <  2:330906/143‑1 (MQ=255)      ttGGCAATCCCTTGTAATTCTAATAATTTCAGGGCTTCTCCCAGTACATCTTCACGTTGCACGCTATTTTCCTCCGTCTTTCCCACTGCAAGTGTCGTTCACGGTTGGCGATCGCGCAAATGTGCGCTGAAGGTTTCAGCATc                                                                                                                                           >  1:563943/1‑143 (MQ=255)      ttGGCAATCCCTTGTAATTCTAATAATTTCAGGGCTTCTCCCAGTACATCTTCACGTTGCACGCTATTTTCCTCCGTCTTTCCCACTGCAAGTGTCGTTCACGGTTGGCGATCGCGCAAATGTGCGCTGAAGGTTTCAGCATc                                                                                                                                           >  1:614051/1‑143 (MQ=255)         gCAATCCCTTGTAATTCTAATAATTTCAGGGCTTCTCCCAGTACATCTTCACGTTGCACGCTATTTTCCTCCGTCTTTCCCACTGCAAGTGTCGTTCACGGTTGGCGATCGCGCAAATGTGCGCTGAAGGTTTCAGCATCCAt                                                                                                                                        >  2:700906/1‑143 (MQ=255)                 ttGTAATTCTAATAATTTCAGGGCTTCTCCCAGTACATCTTCACGTTGCACGCTATTTTCCTCCGTCTTTCCCACTGCAAGTGTCGTTCACGGTTGGCGCTCGCGCAAATGTGCGCTGAAGGTTTCTGCATCCCTCAAGcccc                                                                                                                                >  2:943412/1‑142 (MQ=255)                             taatTTCAGGGCTTCTCCCAGTACATCTTCACGTTGCACGCTATTTTCCTCCGTCTTTCCCACTGCAAGTGTCGTTCACGGTTGGCGATCGCGCAAATGTGCGCTGAAGGTTTCAGCATCCATAAAGCCCGTGACGCGTGCtt                                                                                                                    >  2:21554/1‑143 (MQ=255)                                    aGGGCTTCTCCCAGTACATCTTCACGTTGCACGCTATTTTCCTCCGTCTTTCCCACTGCAAGTGTCGTTCACGGTTGGCGATCGCGCAAATGTGCGCTGCAGCTTCTTTCTTCCATAAAGCCCGTGACGCGGGCTTGTGGATg                                                                                                             >  2:714010/1‑143 (MQ=255)                                    aGGGCTTCTCCCAGTACATCTTCACGTTGCACGCTATTTTCCTCCGTCTTTCCCACTGCAAGTGTCGTTCACGGTTGGCGATCGCGCAAATGTGCGCTGAAGGTTTCAGCATCCATAAAGCGCGTGACGCGTGCTTGTGGATg                                                                                                             >  1:170115/1‑143 (MQ=255)                                     gggCTTCTCCCAGTACATCTTCACGTTGCACGCTATTTTCCTCCGTCTTTCCCACTGCAAGTGTCGTTCACGGTTGGCGATCGCGCAAATGTGCGCTGAAGGTTTCAGCATCCATAAAGCCCGTGACGCGTGCTTGTGGATGc                                                                                                            >  1:910152/1‑143 (MQ=255)                                             cccAGTACATCTTCACGTTGCACACTATTTTCCTCCGTCTTTCCCACTGCAAGTGTCGTTCACGGTTGGCGATCGCGCAAATGTGCGCTGAAGGTTTCAGCATCCATAAAGCCCGTGACGCGTGCCTGTGGATGCTCCCGGcc                                                                                                    >  2:570825/1‑143 (MQ=255)                                              ccAGTACATCTTCACGTTGCACGCTATTTTCCTCCGTCTTTGCCACTGCAAGTGTCGTTCACGGTTGGCGGTCGCGCATATGTGCGCTGAAGGTTTCAGTATCCATAAAGCCCGTGACGCGTGCTTGTGGATGCTCCTGGCCt                                                                                                   <  1:454072/143‑1 (MQ=255)                                                aGTACATCTTCACGTTGCACGCTATGTGCCTCCGTCTTTCCCACTGCAAGGGTCGTTCACGGTTGGCGATCGCGCAAATGTGCGCTGAAGGTTTCAGCATCCATAAAGCCCGTGACGCGTGCTTGTGGATGCTCCTGGCCTTg                                                                                                 <  2:308677/143‑1 (MQ=255)                                                           ctctaagaCGCGATTGTCCTCCATCTTTCACAATGCAAGTGTAGTTCACGGGTGGCGATCGCGCAAAAGAGCGCGGAAGGTTTCAGAATCCATAAAGCCCGTGACGCGTGCTTGTGGATGCTCCTGGCCTTGTACGTCaaaaa                                                                                      <  2:344110/136‑1 (MQ=255)                                                              ttGCACGCTATTTTCCTCCGTCTTTCCCACTGCAAGTGTCGTTCACGGTTGGCGATCGCGCAAATGTGCGCTGAAGGTTTCAGCATCCATAAAGCCCGTGACGCGTGCTTGTGGATGCTCCTGGCCTTGTCCGTCAAAAAaga                                                                                   <  1:133427/143‑1 (MQ=255)                                                                       aTTTTCCTCCGTCTTTCCCACTGCAAGTGTCGTTCACGGTTGGCGATCGCGCAAATGTGCGCTGAAGGTTTCAGCATCCAGAAAGCCCGTGACGCGTGCTTGTGGATGCTCCTGGCCTTGTCCGTCAAAAAAGAGAATTGTCg                                                                          <  1:930965/143‑1 (MQ=255)                                                                           tcctccGTCTTTCCCACTGCAAGTCTCGTTCACGGTTGGCTATCGCGCAAATGTGCGCTGAAGGTTTCAGCATCCATAAAGCCCGTGACGCGTGCTTGTGGATGCTCCTGGCCTTGTCCGTCAAAAAAGAGAATTGTCGGTAg                                                                      <  1:827753/143‑1 (MQ=255)                                                                                    cgtCCCACTGCAAGTGTCGTTCACGGTTGGCGATCGCGCAAAGGTGCGCTGAAGGTTTCAGCATCCATAAAGCCCGTGACGCGTGCTTGTGGATGCTCCTGGCCTTGTCCGTCAAAAAAGAGAATTGTCGGTAGGCCAAGGAc                                                             <  2:978977/141‑1 (MQ=255)                                                                                     ttCCCACTGCAAGTGTCGTTCACGGTTGGCGATCGCGCAAATGTGCGCTGAAGGTTTCAGCATCCATAAAGCCCGTGACGCGTGCTTGTGGATGCTCCTGGCCTTGTCCGTCAAAAAAGAGAATTGTCGGTAGGCCAAGGACa                                                            >  1:862455/1‑143 (MQ=255)                                                                                        ccACTGCAAGTGTCGTTCACGGTTGGCGATCGCGCAAATGTGCGCTGAAGGTTTCAGCATCCATAAAGCCCGTGACGCGTGCTTGTGGATGCTCCTGGCCCTGTCCGTCAAAAAAGAGCATTGTCGGTAGGCCAAGGACACTa                                                         >  2:113698/1‑143 (MQ=255)                                                                                          aCTGCAAGTGTCGTTCACGGTTGGCGATCGCGCAAATGTGCGCTGAAGGTTTCAGCATCCATAAAGCCCGTGACGCGTGCTTGTGGATGCTCCTGGCCTTGTCCGTCAAAAAAGAGAATTGTCGGTAGGCCAAGGACATTAAg                                                       <  1:100007/143‑1 (MQ=255)                                                                                          aCTGCAAGTGTCGTTCACGGTTGGCGATCGCGCAAATGTGCGCTGAAGGTTTCAGCATCCATAAAGCCCGTGACGCGTGCTTGTGGATGCTCCTGGCCTTGTCCGTCAAAAAAGAGAATTGTCGGTAGGCCAAGGACATTAAg                                                       <  1:21554/143‑1 (MQ=255)                                                                                          aCTGCAAGTGTCGTTCACGGTTGGCGATCGCGCAAATGTGCGCTGAAGGTTTCAGCATCCATAAAGCCCGTGACGCGTGCTTGTGGATGCTCCTGGCCTTGTCCGTCAAAAAAGAGAATTGTCGGTAGGCCAAGGACATTAAg                                                       >  1:40114/1‑143 (MQ=255)                                                                                                 gggtCGTTCACGGTTGGCGATCGCGCAAATGTGCGCTGAAGGTTTCAGCATCCATAAAGCCCGTGACGCGTGCTTGTGGATGCTCCGGGCCTTGTCCGTCAAAAAAGAGAATTGTCGGTAGGCCAAGGACATTAAGATGCttt                                                <  2:962800/141‑1 (MQ=255)                                                                                                   gtCGTTCACGGTTTGCGATCGCGCAAATCTGCGCTGAAGGTTTCCGCATCCATAAAGCCCGTGACGCGTGCTTGTGGATGCTCCTTGCCTTGTCCGTCAAAAAAGAGAATTGTCGGTAGGCCAAGGACATTAAGATGCTTTaa                                              <  1:198487/143‑1 (MQ=255)                                                                                                       ggcACGGTTGGCGACCGCGCAAATGTGCGCTGAAGGTTTCAGCATCCATAAAGCCCGTGACGCGTGCTTGTGGATGCTCCTGGCCTTGTCCGTCAAAAAAGAGAATTGTCGGTAGGCCAAGGACATTAAGATGCTTTAACAgc                                          <  1:862846/141‑1 (MQ=255)                                                                                                         cggcgtcggCGATCTCGCGCATGTGCGCTGCGGGTTGCAGCATCCATAAAGCCCGTGACGCGTGCTTGTGGATGCTCCTGGCCGTGTCCGTCAAAAAAGAGAATTGTCGGTAGGCCAAGGACATTAAGATGCTTTAACAgcgc                                        <  2:849630/136‑1 (MQ=255)                                                                                                              ttGGCGATCGCGCAAATGTGCGCTGAAGGTTTCAGCATCCATAAAGCCCGTGACGCGTGCTTGTGGATGCTCCTGGCCTTGTCCGTCAAAAAAGAGAATTGTCGGTAGGCCAAGGACATTAAGACGCTTTAACAGCGCGACAt                                   >  2:845515/1‑143 (MQ=255)                                                                                                                 cccaTCGCGCAAACGTGCGATGAAGGTTTCAGCCTCCATAAAGCCCGTGACGCGTGCTTGTGGATGCTCCTGGCAAAAAAAAAAAAAAAAGAGAATTGTCGGTAGGCCAAGGACATTAAGATGCTTTAACAGCGCCACATCtt                                <  2:799903/140‑1 (MQ=255)                                                                                                                      cgcgCAAATGTGCGCTGAAGGTTTCAGCATCCATAAAGCCCGTGACGCGTGCTTGTGGATGCTCCTGGCCTTGTCCGTCAAAAAAGAGAATTGTCGGTAGGCCAAGGACATTAAGATGCTTTAACAGCGCCACATCTTGTGcg                           >  1:931898/1‑143 (MQ=255)                                                                                                                              tgtgCGCTGAAGGTTTCAGCATCCATAAAGCCCGTGACGTGTGCTTGTGCATGCTCCTGGCCTTGTCCGTCAAAAAAGAGAATTGTCGTTAGGTCAAGGACATTAAGATGTTTTAACACCGCCACATCTTGTGCGTCGTTGGc                   <  1:663300/143‑1 (MQ=255)                                                                                                                               gttcgcTGAAGGTTTCAGCATCCATAAACCCCGTGACGCGTGCTTGTGGATGCTCCTGGCCTTGTCCGTCAAAAAAGAGAATTGTCGGTAGGCCAAGGACATTAAGATGCTTTAACAGCGCCACATCTTGTGCGTCGTTGGcc                  <  2:139220/140‑1 (MQ=255)                                                                                                                                 gcgcGGAAGGTTTCAGCATCCATAAAGCCCGTGACGCGTGCTTGTGGATGCTCCTGGCCTTGTCCGTCAAAAAAGAGAATTGTCGGTAGGCCAAGGACATTAAGATGCTTTAACAGCGCCACATCTTGTGCGTCGTTGGCCGt                <  1:666697/143‑1 (MQ=255)                                                                                                                                   gcTGAAGGTTTCAGCATCCATAAGGCCCGTGTCGCGGGCTTGTGGATGCGCCTGGCCTTGTCCGTCAAAAAAGAGAATTGTCGGTAGGCCAAGGACATTAAGATGCTTTAACAGCGCCACATCTTGTGCGTCGTTGGCCGTGa              <  1:88451/143‑1 (MQ=255)                                                                                                                                   gcTGAAGGTTTCAGCATCCATAAAGCCCGTGACGCGTGCTTGTGGATGCTCCTGGCCTTGTCCGTCAAAAAAGAGAATTGTCGGTAGGCCAAGGACATTAAGATGCTTTAACAGCGCCACATCTTGTGCGTCGTTGGCCGTGa              >  2:640897/1‑143 (MQ=255)                                                                                                                                   gcTGAAGGTTTCAGCATCCATAAAGCCCGTGACGCGTGCTTGTGGATGCTCCTGGCCTTGTCCGTCAAAAAAGACAATTGTCGGTAGGCCAAGGACATTAAGATGCTTTAACAGCACCACATCTTGTGCGTCGTTGGCCGTGa              >  2:112974/1‑143 (MQ=255)                                                                                                                                    cTGAAGGTTTCAGCATCCATAAAGCCCGTGACGCGTGCTTGTGGATGCTCCTGGCCTTGTCCGTCAAAAAAGAGAATTGTCGGTAGGCCAAGGACATTAAGATGCTTTAACAGCGCCACATCTTGTGCGTCGTTGGCCGTGAc             >  1:793958/1‑143 (MQ=255)                                                                                                                                     tGAAGGTTTCAGCATCCATAAAGCCCGTGACGCGTGCTTGTGGATGCTCCTGGCCTTGTCCGTCAAAAAAGAGACTTCTCGGTAGGCCAAGGACATTAAGATGCTTTAACAGCGCCACCTCTTGTGCGTCGTCGGCCGTCACg            >  2:262060/1‑143 (MQ=255)                                                                                                                                     tGAAGGTTTCAGCATCCATAAAGCCCGTGACGCGTGCTTGTGGATGCTCCTGGCCTTGTCCGTCAAAAAAGAGAATTGTCGGTAGGCCAAGGACATTAAGATGCTTTAACAGCGCCACATCTTGTGCGTCGTTGGCCGTGACg            >  1:487305/1‑143 (MQ=255)                                                                                                                                        aGGTTTCAGCATCCATAAAGCCCGTGACGCGTGCTTGTGGATGCTCCTGGCCTTGTCCGTCAAAAAAGAGAATTGTCGGTAGGCCAAGGACATTAAGATGCTTTAACAGCGCCACATCTTGTGCGTCGTTGGCCGTGACGTTg         <  1:177737/143‑1 (MQ=255)                                                                                                                                           tttCAGCATCCGTAAAGCCCGTGACGCGTGCTTGTGGATGCCCCTGGCCTTGTCCGTCAAAAAAGAGAATTGTCGGTAGGCCAGGGACATTAAGATGCTTTAACAGCGCCACATCTTGTGCGTCGTTGGCCGTGACGTTGGcc      <  2:902183/143‑1 (MQ=255)                                                                                                                                           tttCAGCATCCATAAAGCCCGTGACGCGTGCTTGTGGATGCTCCTGGCCTTGTCCGTCAAAAAAGAGAATTGTCGGTAGGCCAAGGACATTAAGATGCTTTAACAGCGCCACATCTTGTGCGTCGTTGGCCGTGACGTTCGcc      >  1:214258/1‑143 (MQ=255)                                                                                                                                             tgaGCATCCGTTAGGGCGGTGACGCGTGCTTGTGGTGGCGCGTGGGGTTGTCGGTCAAAAAGGAGAATGGGCGGTAGGCCAAGGACATTAAGATGCGTTAACAGCGCCACATCTTGTGCGTCGTTGGCCGTGACGTTGGCCTg    <  2:296791/141‑1 (MQ=255)                                                                                                                                              cAGCATCCATAAAGCCCGTGACGCGTGCTTGTGGATGCTCCTGGCCTTGTCCGTCAAAGAAGGGAATTGTCGGTAGGCCAAGGACATTAAGATGCTTTAACAGCGCCACATCTTGTGCGTCGTTGGCCGTGACGTTGGCCTGa   >  2:582674/1‑143 (MQ=255)                                                                                                                                              cAGCATCCATAAAGCCCGTGACGCGTGCTTGTGGATGCTCCTGGCCTTGTCCGTCAAAAAAGAGAATTGTCGGTAGGCCAAGGACATTAAGATGCTTTAACAGCGCCACATCTTGTGCGTCGTTGGCCGTGACGTTGGCCTGa   <  2:793958/143‑1 (MQ=255)                                                                                                                                               aGCATCCCTACAGCCCGTGACCCCGGCTGGTGGATGCTCCTTGCCTTGTCCGTCAAAAAAGAGAATTGTCGGTAGGCCAAGGACATTAAGATGCTTTAACAGCGCCACATCTTGTGCGTCGTTGGCCGTGACGTTGGCCTGaa  <  2:5957/143‑1 (MQ=255)                                                                                                                                               aGCATCCCAAAAGCCCTGGACGCGGGACTGTCGACGCTCCTGGCGTGGTCCGTCAAAAAAGAGACCTGTCGGGAGGCCAAGGACAGTAAGATGCTTTAACAGCGCCACATCTTGTGCGTCGTTGGCCGTGACGTTGGCCTGaa  <  1:35830/143‑1 (MQ=255)                                                                                                                                               aGCATCCATAAAGCCCGTGACGCGTGCTTGTGGATGCTCCTGGCCTTGTCCGTCAAAAAAGAGAATTGTCGGTAGGCCAAGGACATTAAGATGCTTTAACAGCGCCACATCTTGTGCGTCGTTGGCCGTGACGTTGGCCTGaa  >  1:359921/1‑143 (MQ=255)                                                                                                                                               aGCATCCATAAAGCCCGTGACGCGTGCTTGTGGATGCTCCTGGCCTTGTCCATCAAAAAAGAGAATTGTCGGTAGGCCAAGGACATTAAGATGCTTTAACAGCGCCACATCTTGTGCGTCGTTGGGCGTGACGTTGGCCTGaa  >  1:307842/1‑143 (MQ=255)                                                                                                                                               aGCATCCAGAAGGCCCGTGACGCGTGCTTGTGGATGCTCCTGGCCGTGTCCGTCAAAAAAGCGAATTGTCGGTAGGCCAAGGACATTAAGATGCTTTAACAGCGCCACATCTTGTGCGTCGTTGGCCGTGACGTTGGCCTGaa  <  1:5769/143‑1 (MQ=255)                                                                                                                                               |                                                                                                                                               TGGTGTTGGCAATCCCTTGTAATTCTAATAATTTCAGGGCTTCTCCCAGTACATCTTCACGTTGCACGCTATTTTCCTCCGTCTTTCCCACTGCAAGTGTCGTTCACGGTTGGCGATCGCGCAAATGTGCGCTGAAGGTTTCAGCATCCATAAAGCCCGTGACGCGTGCTTGTGGATGCTCCTGGCCTTGTCCGTCAAAAAAGAGAATTGTCGGTAGGCCAAGGACATTAAGATGCTTTAACAGCGCCACATCTTGTGCGTCGTTGGCCGTGACGTTGGCCTGAA  >  NC_000913/4363242‑4363526

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.