New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1299498	0 (0.000)	58 (1.070)	50/272	0.1	100%	intergenic (+253/‑1684)	ychE/oppA	UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein
	?	NC_000913	1300698 =	0 (0.000)					intergenic (+1453/‑484)	ychE/oppA	UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein

AAATTACAGTTAGTTATAAGGATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCG‑CCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGACAGTGAATTCAGCAGTAAGCGCCGTCAGACCAGAAAAGAGATTTTCTT  >  NC_000913/1299356‑1299640                                                                                                                                                |                                                                                                                                               aaaTTACAGTTAGTTATAAGGATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCG‑CAACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTGGGTAGAGGAAGGTGCTAA                                                                                                                                                >  1:755716‑M1/1‑143 (MQ=255) aaaTGACAGTTAGTTATAAGGATTTCCTTAACTGCTTCTCCTCGCCATCCTGTTATTTTCG‑CCACATCAGAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAA                                                                                                                                                <  1:557324‑M1/143‑1 (MQ=255)        agttagttATAAGGATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCG‑CCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCTTCTGCTTTTGGTAGAGGAAAGTGCTAAataataa                                                                                                                                         <  1:240392‑M1/143‑8 (MQ=255)         gttagttaTAAGGATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCG‑CCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataat                                                                                                                                        <  1:457480‑M1/143‑9 (MQ=255)           tagttaTAAGGATTTCCTTAACTGCTTCTCCTAACCATCATGTTATTTTCG‑CCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatca                                                                                                                                      <  2:227827‑M1/143‑11 (MQ=255)            acttataACGATTACCTTAACTGCTCCTCCTCACCATCATGTTATTTTCG‑CCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaa                                                                                                                                     <  1:134925‑M1/141‑12 (MQ=255)              ttaTAAGGATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTACGATTACATC‑TAAGTCTGGGCTTGTTGAAAAACAACTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaatt                                                                                                                                   >  1:1009500‑M1/1‑130 (MQ=255)                 taAGGATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCG‑CCACATCATAATCCTGGGCTTGCTTAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgtt                                                                                                                                >  1:334106‑M1/1‑127 (MQ=255)                    ggATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCG‑CCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaag                                                                                                                             >  1:307847‑M1/1‑124 (MQ=255)                           gctaaATGCTTATCCTCACGTTCAGGTTATTTTCG‑TCACATCATAATTCTGGGCTTGCCGAATAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgt                                                                                                                      <  2:896407‑M1/141‑27 (MQ=255)                            ttAACTGCTTCTCCTCACCATCATGTTATTTTCG‑CCACATCATAATCCTGGGCTTGCTGAAGAATAATTGACATGATATTATTAATTTCACTGCCTTTGGTAGAGCAAAGTGCTACataataatcactcgttaacttattgtg                                                                                                                     >  2:977597‑M1/1‑116 (MQ=255)                            ttAACTGCTTCTCCTCACCATCATGTTATTTTCG‑CCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtg                                                                                                                     >  1:289080‑M1/1‑116 (MQ=255)                               aCTGCTTATCTTCACCATCATGTTATTTTCG‑CCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCTACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcat                                                                                                                  <  2:189354‑M1/143‑31 (MQ=255)                                 tGCTTCTCCTCACCATCATGTTATCTTCG‑CCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcattt                                                                                                                >  1:749435‑M1/1‑111 (MQ=255)                                       tcctcACCATCATGTTATTTTCG‑CCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataatgatcaattgttaagttagtgcgcgtttgactac                                                                                                          >  1:213429‑M1/1‑105 (MQ=255)                                         ctcACCATCATGTTATTTTCG‑CCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactg                                                                                                        >  1:397813‑M1/1‑103 (MQ=255)                                         ctcACCATCATGTTATTCTCG‑CCACATCATAATCCTGGGCTTGCTGAAAAATAATTGAGATGATATTATTAGTTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactg                                                                                                        >  1:582669‑M1/1‑103 (MQ=255)                                          tcACCATCATGTTATTTTCG‑CCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactgg                                                                                                       <  1:791819‑M1/143‑42 (MQ=255)                                          tcACCATCATGTTATTTTCG‑CCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactgg                                                                                                       >  1:457417‑M1/1‑102 (MQ=255)                                                   tGTTATTCTCG‑CCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaat                                                                                              <  1:311547‑M1/143‑51 (MQ=255)                                                    gTTATTTTCG‑CCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatc                                                                                             >  2:678231‑M1/1‑92 (MQ=255)                                                     ttATTTTCG‑CCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatca                                                                                            <  1:834154‑M1/143‑53 (MQ=255)                                                        ttttCG‑CCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaa                                                                                         >  1:237171‑M1/1‑88 (MQ=255)                                                         tttCG‑CCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaa                                                                                        >  1:292700‑M1/1‑87 (MQ=255)                                                          ttCG‑CCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaa                                                                                       <  1:869695‑M1/143‑58 (MQ=255)                                                            cG‑CCACATCATACTCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaaga                                                                                     <  1:579978‑M1/143‑60 (MQ=255)                                                                 acaTCTGAATCCTTGGCTTGCCTCACAATAATTGAAATTATATTATGAATTCCACTGCCTTTGGTAGAGGAAAGCTCTAAataataattaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagataga                                                                                 <  2:668953‑M1/143‑64 (MQ=255)                                                                    tcatAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacat                                                                              <  1:404695‑M1/143‑67 (MQ=255)                                                                            cTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagcc                                                                      >  1:559602‑M1/1‑69 (MQ=255)                                                                            cTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagcc                                                                      >  2:829078‑M1/1‑69 (MQ=255)                                                                                 cTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatct                                                                 >  1:307471‑M1/1‑64 (MQ=255)                                                                                 cTTGCTGAAGAATAATGGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatct                                                                 <  1:760518‑M1/143‑80 (MQ=255)                                                                                       gaagaaTAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcacta                                                                                                           <  2:849573‑M1/95‑38 (MQ=255)                                                                                       gaagaaTAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcacta                                                                                                           >  1:849573‑M1/1‑58 (MQ=255)                                                                                       gaagaaTAATTGAAATGATATTAGTAACTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctattt                                                           <  2:188434‑M1/143‑86 (MQ=255)                                                                                        aagaaTAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagctagacatgcttagccaatctctatttg                                                          >  1:154800‑M1/1‑57 (MQ=255)                                                                                              aatTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaa                                                    <  2:43173‑M1/143‑93 (MQ=255)                                                                                                ttGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaatt                                                  >  1:635956‑M1/1‑49 (MQ=255)                                                                                                ttGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaatt                                                  <  2:397813‑M1/143‑95 (MQ=255)                                                                                                ttGAAATGATATTATTAATTCCACTGCCGTTGGTAGAGGAAAATGCTAAataataatcacttgttaaattattgtgcatctaactactggaactgtaatcagaaaagatagacatgcttaacaaatctataattgatagaatt                                                  >  2:15625‑M1/1‑49 (MQ=255)                                                                                                   aaaTGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaa                                               >  2:744628‑M1/1‑46 (MQ=255)                                                                                                    aaTGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaa                                              >  2:221442‑M1/1‑45 (MQ=255)                                                                                                    aaTGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaa                                              >  2:605‑M1/1‑45 (MQ=255)                                                                                                     aTGATATTATTAATTCCACTGCCTTTGGTCGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggcactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaag                                             <  2:819864‑M1/143‑100 (MQ=255)                                                                                                                 aTTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataacaatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtttgttaag                                 >  1:655459‑M1/1‑32 (MQ=255)                                                                                                                 aTTACACTGCCGTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaactattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtttgttaag                                 <  2:391887‑M1/143‑112 (MQ=255)                                                                                                                     cgttgtctttggtAGAGGAAACTGCTAAataataatcaattgttaaaatattgtgcacttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtttgttaaggcat                             <  2:321610‑M1/137‑116 (MQ=255)                                                                                                                      aCTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttggctagtgcctatctcattgaattgaaagatgtttgttaaggcatg                            >  2:446833‑M1/1‑27 (MQ=255)                                                                                                                      aCTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtttgttaaggcatg                            >  2:686433‑M1/1‑27 (MQ=255)                                                                                                                          ccTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccactctctatttgattgacttgaatgatgtttgttaaggcatggatg                        >  1:597799‑M1/1‑23 (MQ=255)                                                                                                                            tttGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtttgttaaggcatggatgca                      <  2:650140‑M1/143‑123 (MQ=255)                                                                                                                             ttGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtttgttaaggcatggatgcaa                     <  2:688729‑M1/143‑124 (MQ=255)                                                                                                                             ttGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtttgtcaaggcatggatgaaa                     >  1:538786‑M1/1‑20 (MQ=255)                                                                                                                              tGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtttgttaaggcatggatgcaag                    <  1:810349‑M1/143‑125 (MQ=255)                                                                                                                              tGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtttgttaaggcatggatgcaag                    <  2:1009500‑M1/143‑125 (MQ=255)                                                                                                                                 tAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattggaagatgtttgttaaggcatggatgcaagcta                 >  1:251885‑M1/1‑16 (MQ=255)                                                                                                                                   gagGAATGTTCTAAataataattaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtttgttaaggcatggatgcaagctata               <  2:109073‑M1/143‑130 (MQ=255)                                                                                                                                         aGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtttgttaaggcatggatgcaagctatagattct         <  1:823381‑M1/143‑136 (MQ=255)                                                                                                                                         aGTGCTAAataacaatcgattgttaaattattgcgcatttcactactggaactgtaatcagaaaagatagacatgcttagccagtctctatttgattgaatggatcaaatattgttaaggcatggatgcaagctatagattct         <  2:559156‑M1/143‑136 (MQ=255)                                                                                                                                          gTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtttgttaaggcatggatgcaagctatagattctg        <  1:886303‑M1/143‑137 (MQ=255)                                                                                                                                              tAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtttgttaaggcatggatgcaagctatagattctgatac    >  1:671563‑M1/1‑3 (MQ=255)                                                                                                                                                aataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtttgttaaggcatggatgcaagctatagattctgatacgg  <  2:289080‑M1/143‑143 (MQ=255)                                                                                                                                                aataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtttgttaaggcatggatgcaagctatagattctgatacgg  >  1:773281‑M1/1‑1 (MQ=255)                                                                                                                                                |                                                                                                                                               AAATTACAGTTAGTTATAAGGATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCG‑CCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGACAGTGAATTCAGCAGTAAGCGCCGTCAGACCAGAAAAGAGATTTTCTT  >  NC_000913/1299356‑1299640

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.