New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	3852834 =	52 (0.930)	4 (0.080)	4/258	7.7	8.1%	intergenic (‑50/+56)	ilvB/ivbL	acetolactate synthase 2 large subunit/ilvB operon leader peptide
	?	NC_000913	3852867 =	43 (0.840)					intergenic (‑83/+23)	ilvB/ivbL	acetolactate synthase 2 large subunit/ilvB operon leader peptide
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

ACAATCTTAATGCCCTGCTGTTCCAGGAAATGAACGATAAATTCTGCGCCGGTAAAGCGCTTACGCGTCGATGTTGTGCCCGAACTTGCCATGCTCCAGTCCTTTTCTTCTGGGCCGACTTTCCGGGAGGTGCTTAAACGAAAAACCCCGCCCGGTTTGCGCCGGCGGGGTTTTGGAATCGTGTGTTGTTCCAGTCCCTACGGCGCATTGCCGACGACCACCACCACACGCACGACGACCACTGCGGCGGATGGCGCAGTTGGTAGTAGTTTTGCG  >  NC_000913/3852693‑3852968                                                                                                                                              |                                                                                                                                       acaATCTTAATGCCCTGCTGTTCCAGGAAATGAACGATAAATTCTGCGCCGGTAAAGCGCTTACGCGTCGATGTTGTGCCCGAACTTGCCATGCTCCAGTCCTTTTCTTCTGGGCCGACTTTCCGGGAGGTGCGTACACGaaa                                                                                                                                       >  2:664426/1‑143 (MQ=255) acaATCTGAATGCCCTGCTGGTCCAGGAAATGAACGATAAATTCTGCGCCGGTAAAGCGCTTACGCGTCGATGTTGTGCCCGAACTTGCCATGCTCCAGTCCTTTTCTTCTGGGCCGACTTTCCGGGAGGTGCTTAAACGaaa                                                                                                                                       <  1:373501/143‑1 (MQ=255)             cccTGCTGTTCCAGGAAATGAACGATAAATTCTGCGCCGGTAAAGCGCTTACGCGTCGATGTTGTGCCCGAACTTGCCATGCTCCAGTCCTTTTCTTCTGGGCCGACTTTCCGGGAGGTGCGTAACCGAAAACCCCCGCCCgg                                                                                                                           >  2:897535/1‑143 (MQ=255)              ccTGCTGTTCCAGGAAATGAACGATAAATTCTGCGCCGGTAAAGCGCTTACGCGTCGATGTTGTGCCCGAACTTGCCATGCTCCAGTCCTTTTCTTCTGGGCCGCCTTTCCGGGCGGCGCTTAAACGAAAAAACCCGGCCGGt                                                                                                                          >  2:532685/1‑143 (MQ=255)                     ttCCAGGAAATGAACGATAAATTCTGCGCCGGTAAAGCGCTTACGCGTCGATGTTGTGCCCGAACTTGCCATGCTCCAGTCCTTTTCTTCTGGGCCGACTTTCCGGGAGGTGCTTAAACGAAAAACCCCGCCCGGTTTGCGcc                                                                                                                   <  1:448663/143‑1 (MQ=255)                      tCCAGGAAATGAACGATAAATTCTGCGCCGGTAAAGCGCTTACGCGACGATGTTGTGCCCGAACTTGCCATGCTCCCGTCCTTTTCTTCTGGGCCGACTTTCCGGGAGGTGCTTAGACGAACGACCCCGCCCGGTGCGCGCcg                                                                                                                  >  2:15492/1‑143 (MQ=255)                        cAGGAAATGAACGATAAATTCTGCGCCGGTAAAGCGCTTACGCGTCGATGTTGTGCCCGAACTTGCCATGCTCCAGTCCTTTTCTTCTGGGCCGACTTTCCGGGAGGTGCTTAAACGAAAAACCCCGCCCGGTTTGCGCcggc                                                                                                                >  1:366705/1‑143 (MQ=255)                          ggAAATGAACGATAAAGTCTGCGCCGGTAAAGCGCTTACGCGTCGATGTTGTGCCCGAACGTGCCATGCTCCAGTCCTTTTCTTCTGGGCCGACTTTCCGGGAGGTGCTTAAACGAAAAACCCCGCCCGGTTTGCGCcggcgg                                                                                                              <  2:577842/143‑1 (MQ=255)                           gcaaTGAACGATCCATCCTGCGGCGGTGAGGCGGTTGCGCGTCGATGTTGTGCCCGAACTTGCCATGCTCCAGTCCTTTTCTTCTGTGCCGACTTTCCGGGAGGAAAAAAAAAAAAAAACCCCGCCCGGTTTGCGCCGGCggg                                                                                                             <  2:97292/141‑1 (MQ=255)                            aaaTGAACGATAAATTCTGCGCCGGTAAAGCGCTTACGCGTCGATGTTGTGCCCGAACTTGCCATGCTCCAGTCCTTTTCTTCTGGGCCGACTTTCCGGGAGGGGCTTAAACGAAAAACCCCGCCCGGTTTGCGCCGGCgggg                                                                                                            <  2:129777/143‑1 (MQ=255)                                gaccGATAACTTCTGCGCCGGTAAAGCGCTTACGCGTCGATGTTGTGCCCGAACTTGCCATGCTCCAGTCCTTTTCTTCCGTGCCGACTTTCCGGGAGGTGCTTAAACGAAAAACCCCGCCCGGTTTGCGCCGGCGGGGtttt                                                                                                        <  2:1004272/140‑1 (MQ=255)                                gAACGGTGAATTCTGCGCCGGTAAAGCGCTTACGCGTCGATGTTGTGCCCGACCTTGCCATGCTCCAGTCCTTTTCTTCTGGGCCGACTTTCCGGGAGGTGCTTAAACGAAAAACCCCGCCCGGTTTGCGCCGGCGGGGtttt                                                                                                        <  2:911837/143‑1 (MQ=255)                                    gATAAACTCTGCGCCGGTAAAGCGCTTACGCGTCGATGTTGTGCCCGAACTTGCCATGCTCCAGTCCTTTTCTTCTGGGCCGACTTTCCGGGAGGTGCTTAAACGAAAAACCCCGCCCGGTTTGCGCCGGCGGGGTTTTGGaa                                                                                                    <  1:89473/143‑1 (MQ=255)                                     aTAAATTCTGCGCCGGTAAAGCGCTTACGCGTCGATGTTGTGCCCGAACTTGCCATGCTCCAGTCCTTTTCTTCTGGGCCGACTTTCCGGGAGGTGCTTAAACGAAAAACCCCGCCCGGTTTGCGCAGGCGGGGATCTGGAAt                                                                                                   >  2:241350/1‑143 (MQ=255)                                       aaaTTCTGCGCCGGTAAAGCGCTTACGCGTCGATGTTGTGCCCGAACTTGCCATGCTCCAGTCATTTTCTTCTGGGCCGACTTTCCGGGAGGTGCTTAAACGAAAAACCCCGCCCGGTTTGCGTCCGGGGGGTTTTGGAATCg                                                                                                 >  1:474158/1‑143 (MQ=255)                                        aaTGCTGCGCCGGTAAAGCGCTTACGCGTCGATGTTGTGCCCGAGCTTGTCATGCTCCAGTACTCTGCTTCGGGGGGGGTTTGTGTGCAAACACTTAAACGAAAAACCCCGCCCGGTTTGCGCCGGCGGGGTTTTGGAATCgt                                                                                                <  2:450785/143‑1 (MQ=255)                                        aaTCCTGCGCCGGTAAAGCGCTTGCGCGTCGATGTTGTGCCCGCACTTGCCATGCTCCAGTCCTTTTCTTCTGGGTCGACTTTCCGGGAGGTGCTTAAACGAAAAACCCCGCCCGGTTTGCGCCGGCGGGGTTTTGGAATCgt                                                                                                <  2:507151/143‑1 (MQ=255)                                          ttCTGCGCCGGTAAAGCGCTTACGCGTCGATGTTGTGCCCGAACTTGCCATGCTCCCGTCCTTTTCTTCTGGGCCGACTTTCCGGGAGGTGCTTAAACGAAAAACcccgcc                                                                                                                              >  1:473362/1‑111 (MQ=255)                                          ttCTGCGCCGGTAAAGCGCTTACGCGTCGATGTTGTGCCCGAACTTGCCATGCTCCAGTCCTTTTCTTCTGGGCCGACTTTCCGGGAGGTGCTTAAACGAAAAACcccgcc                                                                                                                              <  2:473362/111‑1 (MQ=255)                                          ttCTGCGCCGGTAAAGCGCTTACGCGTCGATGTTGTGCCCGAACTTGCCATGCTCCAGTCCTTTTCTTCTGGGCCGACTTTCCGGGAGGTGCTTAAACGAAAAACCCCGCCCGGTTTGCGCCGGCGGGGTTTTGGAATCgtgt                                                                                              >  1:882856/1‑143 (MQ=255)                                                 ccGGTAGAGCGCTTACGCGTCGATGTTGTGCCCGAACTTGCCATGCTCCAGTCCTTTTCTTCTGGGCCGACTTTCCGGGAGGTGCTTAAACGAAAACCCCCGCCCGGTTTGCGCCGGCGGGGTTTTGGAATCGTGTGTTGTTc                                                                                       <  2:425764/143‑1 (MQ=255)                                                 ccGGTAAAGCGCTTAGGCGTCGATGTTGTGCCCGAACTTGCCATGCTCCAGTCCTTTTCTTCTGGGCCGACTTTCCGGGAGGTGCTTAAACGAAAAACCCCGCCCGGTTTGCGCCGGCGGGGTTTTGGAATCGTGTGTTGTTc                                                                                       <  2:842549/143‑1 (MQ=255)                                                   ggTAAAGCGCTTACGCGTCGATGTTGTGCCCGAACTTGCCATGCTCCAGTCCTTTTCTTCTGGGCCGACTTTCCGGGAGGTGCTTAAACGAAAAACCCCGCCCGGTTTGCGCCGGCGGGGTTTTGGAATCGTGTGTTGTTCCa                                                                                     <  2:699184/143‑1 (MQ=255)                                                      aaaGCGCTTACGCGTCGATGTTGTGCCCGAACTTGCCATGCTCCAGTCCTTTTCTTCTGGGCCGACTTTCCGGGCGGTGCTGAAACGAAAAACCCCGCCCGGTTTGCGCCGGCGGGGGTTTGGAATCGTGTGTTGTTCCAGTc                                                                                  >  1:740200/1‑143 (MQ=255)                                                            cTTGCGCGTGGATGTTGTGCCCGAACTTGCCGTGCTCCAGTCCTTTTCTTATGGGCCGACTTTCCGGGAGGTGCTTAAACGAAAAACCCCGCCCGGTTTGCGCCGGCGGGGTTTTGGAATCGTGTGTTGTTCCAGTCCCTACg                                                                            <  2:606911/143‑1 (MQ=255)                                                            cTTGCGCGTCGACGTTGTGCCCGAACTTGCCATGCTCCAGTCCTTTTCTTCTGGGCCGACTTTCCGGGAGGTGCTTAAACGAAAAACCCCGCCCGGTTTGCGCCGGCGGGGTTTTGGAATCGTGTGTTGTTCCAGTCCCTACg                                                                            <  2:32932/143‑1 (MQ=255)                                                                    tCGTTGTTGTGCCCGAACTTGCCATGCTCCAGTCCTTTTCTTCTGCGCCGACTTTCCGGGAGGTGCTTAAACGAAAAACCCCGCCCGGTTTGCGCCGGCGGGGTTTTGGAATCGTGTGTTGTTCCAGTCCCTACGGCGCATTg                                                                    <  2:353522/143‑1 (MQ=255)                                                                        tgttgtGCCCGAACTTGCCATGCTCCAGTCCTTTTCTTCTGGGCCGACTTTCCGGGAGGTGCTTAAACGAAAAACCCCGCCCGGTTTGCGCCGGCGGGGTTTTGGAATCGTGTGTTGTTCCAGTCCCTACGGCGCATTGCcga                                                                <  2:781775/143‑1 (MQ=255)                                                                                ccGAACTTGCCATGCTCCAGTCCTTTTCTTCTGGGCCGACTTTCCGGGAGGTGCTTAAACGAAAAACCCCGCCCGGTTTGCGCCGGCGGGGTTTTGGAATCGTGTGTTGTTCCAGTCCCTACGGCGCATTGCCGACGaccacc                                                        >  1:875021/1‑143 (MQ=255)                                                                                ccGAACTTGCCATGCTCCAGTCCTTTTCTTCTGGGCCGACTTTCCGGGAGGTGCTTAAACGAAAAACCCCGCCCGGTTTGCGCCGGCGGGGTTTTGGAATCGTGTGTTGTTCCAGTCCCTACGGCGCATTGCCGACGaccacc                                                        >  1:355446/1‑143 (MQ=255)                                                                                        gCCATGCTCCAGTCCTTTTCTTCTGGGCCGACTTTCCGGGAGGTGCTTCAACGAAAAACCCCGCCCGGTTTGCGCCGGCGGGGTTTTGGAATCGTGTGTGGTTCCAGTCCCTACGGCGCATTGCCGACGACcaccagcaccgg                                                >  2:268293/1‑140 (MQ=255)                                                                                              cttcAGTTCTTTTCTTCTGGGCCGACTGTCCGGGAGGGGCTTAAACGAAAAACCCCGCCCTGTTTGCGCCGGCGGGGTTTTGGAATCGTGTGTTGTTCCATTCCCTACGGCGCATTGCCGACGACCACCACCACACGCacgac                                          <  2:827289/140‑1 (MQ=255)                                                                                                  aGTCCTTTTCTTCTGGGCCGACTTTCCGGGAGGTGCTTAAACGAAAAACCCCGCCCGGTTTGCGCCGGCGGGGTTTTGGAATCGTGTGTTGTTCCAGTCCCTACGGCGCATTGCCGACGACCACCACCACACGCACGCCGccc                                      >  2:922938/1‑143 (MQ=255)                                                                                                       ttttCTTCTGGGCCGACTTTCCGGGAGGTGCTTAAACGAAAAACCCCGCCCGGTTTGCGCCGGCGGGGTTTTGGAATCGTGTGCTGTCCCAGTCCCTACGGCGCATTGCCGACGACCACCACCACACGCACGACGACCACTgc                                 >  1:739830/1‑143 (MQ=255)                                                                                                          tcttctGGGCCGACTTTCCGTGAGGTGTTTAAACGAACATCCCCGCCCGGTTTGCGCCGGCGGGGTTTTGGAATCGTGTGTTGTTCCAGTCCCTACGTCGCATTGCCGACGACCACCACCACACGCACGACGACCACTgcggc                              <  2:746707/143‑1 (MQ=255)                                                                                                          tcttctGGGCCGACTTTCCGGGAGGTGCTTAAACGAAAAACCCCGCCCGGTTTGCGCCGGCGGGGTTTTGGAATCGTGTGTTGTTCCAGTCCCTACGGCGCATTGCCGACGACCACCACCACACGCACGACGACCACTgcggc                              <  1:572562/143‑1 (MQ=255)                                                                                                          ccttcttGGCCCACTTTCCTGCAGGGTCTTAAACGAAAAACCCCGCCCGGTTTGCGCCGGCGGGGTTTTGGAATCGTGTGTTGTTCCAGTCCCTACGGCGCATTGCCGACGACCACCACCACACGCACGACGACCACTgcggc                              <  2:89814/142‑1 (MQ=255)                                                                                                            ttctGGGCCGACTTTCCGGGAGGTGCTTAAACGAAAAACCCCGCCCGGTTTGCGCCGGCGGCGTTTTGGAATCGTGTGTTGTTCCAGTCCCTACGGCGCCTTGCCGACGACCACCACCCCACGCACGACGACCACTGcagcgg                            >  2:44553/1‑143 (MQ=255)                                                                                                              gtgcgCCGACGTTCCGGGAGGTGCGTAAACGAAAAACCCCGCCCGGTTTGCGCCGGCGGGGTTTTGGAATCGTGTGTTGTTCCAGTCCCTACGGCGCATTGCCGACGACCACCACCACACGCACGACGACCACTGCGGCGGAt                          <  1:28802/139‑1 (MQ=255)                                                                                                                   ccGACTTTCCGGGAGGTGCTTAAACGAAAAACCCCGCCCGGTTTGCGCCGGCGGGGTTTTGGAATCGTGTGTTGTTCCAGTCCCTACGGCGCATTGCCGACGACCACCACCACACGCCCGTGGCCCACCCCGACGGATGgcgc                     >  2:396404/1‑143 (MQ=255)                                                                                                                      aCTTTCCGGGAGGTGCTTAAACGAAAAACCCCGCCCGGTTTGCGCCGGCGGGGTTTTGGAATCGTGTGTTGTTCCAGTCCCTACGGCGCATTGCCGACGACCACCACCACACGCACGACGACCACTGCGGCGGATGGCGCAGt                  >  1:292431/1‑143 (MQ=255)                                                                                                                        tttCCGGGAGGTGCTTAAACGAAAAACCCCGCCCGGTTTGCGCCGGCGGGGTTTTGGAATCGTGTGTTGTTCCAGTCCCTACGGCGCATTGCCGACGACCACCACCACACGCACGACGACCACTGCGGCGGATGGCGCAGTTg                >  1:550303/1‑143 (MQ=255)                                                                                                                        tttCCGGGAGGTGCTCAAACGACACACCCCGCCCGGTTTGCGCCGGCGGGGTTTTGGAATCGTGTGTTGTTCCAGTCCCTACGGCGCATTGCCGACGACCACCACCACACGCACGACGACCACTGCGGCGGATGGCGCAGTTg                <  1:671392/143‑1 (MQ=255)                                                                                                                         ttCCGGGAGGTGCTTAAACGAAAAACCCCGCCCGGTTTGCGCCGGCGGGGTTTTGGAATCGTGTGTTGTTCCAGTCCCTACGGCGCATTGCCGACGACCACCACCACACGCACGACGACCACTGCGGCGGATGGCGCAGTTgg               >  1:795006/1‑143 (MQ=255)                                                                                                                         ttCCGGGAGGTGCTTAAACGAAAAACCCCGCCCGGTTTGCGCCGGCGGGGTTTTGGAATCGTGTGTTGTTCCAGTCCCTACGGCGCATTGCCGACGACCACCACCACACGCACGACGACCACTGCGGCGGATGGCGCAGTTgg               <  1:241350/143‑1 (MQ=255)                                                                                                                           ccGGGAGGTGCTTAAACGAGAACCCCCGCCCGGTTTGCGCCGGCGGGGTTTTGGAATCGTGTGTTGTTCCAGGCCCTACGGCGCATTGCCGACGACCACCACCACACGCACGACGACCACTGCGGCGGATGGCGCAGTTGgta             <  2:895976/143‑1 (MQ=255)                                                                                                                                aGGTGCTTAGACGAAAAACCCCGCCCGGTTTGCGCCGGCGGGGTTTTGGAATCGTGTGTTGTTCCAGTCCCTACGGCGCATTGCCGACGACCACCACCACACGCACGACGACCACTGCGGCGGATGGCGCAGTTGGTagtagt        <  2:590768/143‑1 (MQ=255)                                                                                                                                   tGCTTAAACGAAAATCCCCGCCCGGTTTGCGCCGGCGGGGTTTTGGAATCGTGTGTTGTTCCAGTCCCTACGGCGCATTGCCGACGACCACCACCACACGCACGACGACCACTGCGGCGGATGGCGCAGTTGGTAGTAGtttt     <  1:90827/143‑1 (MQ=255)                                                                                                                                   tGCTTAAACGAAAAACCCCGCCCGGTTTGCGCCGGCGGGGTTTTGGAATCGTGTGTTGTTCCAGTCCCTACGGCGCATTGCCGACGACCACCACCACACGCACGACGACCACTGCGGCGGATGGCGCAGTTGGTAGTAGtttt     <  1:912772/143‑1 (MQ=255)                                                                                                                                    gCTTGAACGACAAGCCCCGCCCGGGTTGCGCCGGCGGGGTTTTGGAATCGTGTGTTGTCCCAGTCCCTACGGCGCATTGCCGACGACCACCACCACACGCACGACGACCACTGCGGCGGATGGCGAAGCTGGTATTAGTTTTg    <  2:366705/143‑1 (MQ=255)                                                                                                                                     cgtAAACGATACAGCACGCCCGGTTCGCGCCGGCGGGTTATTGCAATACCTTGTTCGTCCAGTCCCTACTTGTCATTGCCGACGACCACCACCACCCGCACGACGACCACTGCGGCGGATGGCGCAGTTGGTAGTAGTTTTGc   <  1:426340/141‑1 (MQ=255)                                                                                                                                      ttAAACGAAAAACCCCGCCCGGTTTGCGCCGGCGGGGTTTTGGAATCGTGTGTTGTTCCAGTCCCTACGGCGCATTGCCGACGACCACCACCACACGCACGACGACCACTGCGGCGGATGGCGCAGTTGGTAGTAGTTTTGCg  >  1:620293/1‑143 (MQ=255)                                                                                                                                              |                                                                                                                                       ACAATCTTAATGCCCTGCTGTTCCAGGAAATGAACGATAAATTCTGCGCCGGTAAAGCGCTTACGCGTCGATGTTGTGCCCGAACTTGCCATGCTCCAGTCCTTTTCTTCTGGGCCGACTTTCCGGGAGGTGCTTAAACGAAAAACCCCGCCCGGTTTGCGCCGGCGGGGTTTTGGAATCGTGTGTTGTTCCAGTCCCTACGGCGCATTGCCGACGACCACCACCACACGCACGACGACCACTGCGGCGGATGGCGCAGTTGGTAGTAGTTTTGCG  >  NC_000913/3852693‑3852968

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.