| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 224973 | 30 (0.400) | 7 (0.100) | 6/268 | 9.6 | 19.6% | noncoding (1203/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon |
| ? | NC_000913 | 2729972 = | NA (NA) | noncoding (1186/1542 nt) | rrsG | 16S ribosomal RNA of rrnG operon | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
GTCGTCAGCTCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGCGGTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACTGGAGGAAGGTGGGGATGACGTCAAGTCATC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/224831‑224973‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtcatcCCCACCTTCCTCCAGTTTATCACTGGCAGTCTCCTTTGAGTTCCCGGCCGGACCGCTGGCAACAAAGGATAAGGGTTGCGCTCGTTGCGGGACTTAACCCAACATTTCACAACACGAGCTGACGACAGCCATGCAGCACCT > NC_000913/2729972‑2730112 GTCGTCAGCTCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGCGGTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACTGGAGGAAGGTGGGGATGACGTCAAGTCATC < 1:394191/143‑1 CTGGAGGAAGGTGGGGATGACGTCAAGTCATCCCCACCTTCCTCCAGTTTATCACTGGCAGTCTCCTTT < 1:255227/69‑1 CTGGAGGAAGGTGGGGATGACGTCAAGTCATCCCCACCTTCCTCCAGTTTATCACTGGCAGTCTCCTTT > 2:255227/1‑69 GAAGGTGGGGATGACGTCAAGTCATCCCCACCTTCCTCCAGTTTATCACTGGCAGTCTCCTTTGAGTTCCCGGCCGGACCGCTGGCAACAAAGGATAAGGGTTGCGCCCGTTGCGGGACTTAACCCACCATTTCACAACACGA > 2:1215191/1‑143 GGTGGGGATGACGTCAAGTCATCCCCACCTTCCTCCAGTTTATCACTGGCAGTCTCCTTTGAGTTCCCGGCCGGACCGCTGGCAACAAAGGATAAGGGTTGCGCTCGTTGCGGGACTTAACCCAACATTTCACAGCACGAGCT > 1:1163064/1‑143 GTGGGGATGACGTCAAGTCATCCCCACCTTCCTCCAGTTTATCACTGGCAGTCTCCTTTGAGTTCCCGGCCGGACCGCTGGCAACAAAGGATAAGGGTTGCGCTCGTTGCGGGACTTAACCCAACATTTCACAACACGAGCTG > 1:969614/1‑143 GTGGGGATGACGTCAAGTCATCCCCACCTTCCTCCAGTTTATCACTGGCAGTCTCCGTTGAGTTCCCGGCCGGACCGCTGGCAACAACGGATAAGGGTTGCGCTCGTTGCGGGACTTAACCCAACATGTCACAACACGAGCTG > 2:942687/1‑143 TGGGGATGACGTCAAGTCATCCCCACCTTCCTCCAGTTTATCACTGGCAGTCTCCTTTGAGGTCCCGGCCGGACCGCTGGCAGCACAGGACAAGGGTTGCGCTCGTTGCGGGCCTTCCCCCAACATCTCACAACCCGCGCGGA > 1:1003641/1‑143 GTCATCCCCACCTTCCTCCAGTTTATCACTGGCAGTCTCCTTTGAGTTCCCGGCCGGACCGCTGGCAACAAAGAAACAGGTTTGCCATAGCTGCGGTACTTAACCCAACATTTCACAACACGAGCTGACGAGCGCCAAGCAGa > 2:284495/1‑142 TCATCCCCACCTTCCTCCAGTTTATCACTGGCAGTCTCCTTTGAGTTCCCGGCCGGACCGCTGGCAACAAAGGATAAGGGTTGCGCTCGTTGCGGGACTTAACCCAACATTTCACTACACGAGCTGACGACAGCCATGCAGCA < 1:460599/143‑1 TCATCCCCACCTTCCTCCAGTTTATCACTGGCAGTCTCCTTTGAGTTCCCGGCCGGACCGCTGGCAACAAAGGATAAGGGTTGCGCTCGTTGCGGGACTTAACCCAACATTTCACAACACGAGCTGACGACAGCCATGCAGCA > 1:1126983/1‑143 TCATCCCCACCTTCCTCCAGTTTATCACTGGCAGTCTCCTTTGAGTTCCCGGCCGGACCGCTGGCAACAAAGGATAAGGGTTGCGCTCGTTGCGGGACTTAACCCAACATTTCACAACACGAGCTGACGACAGCCATGCAGCA < 1:1252796/143‑1 TCATCCCCACCTTCCTCCAGTTTATCACTGGCAGTCTCCTTTGAGTTCCCGGCCGGACCGCTGGCAACAAAGGATAAGGGTTGCGCTCGTTGCGGGACTAAACCCAACATTTCACAAAACGAGCTGACGAACGCCAGGCAGac > 2:791773/1‑141 TCATCCCCACCTTCCTCCAGTTTATCACTGGAAGTCTCCTTTGATTTCCCGGCCGGACCGCTGTCTACAATCGATACGGGTTGCGATCGTTGGTGGTCTCAACCCAACATTTCACCACCCGAGCTGACGACAGCCATGCAGCA > 1:1130036/1‑143 ccTCCCCACCTTCCGCCAGTTCATCACTGGCAGTGTCCTTTGAGTTCCCGGCCGGACCGCTGGCAACAAAGGATAAGGGGGGCGCTCGTTGCGGGACTTAACCCAACATTTCACAACACGAGCTGACGACAGCCATGCAGCAC < 2:1330062/141‑1 CATCCCCACCTTCCTCCAGTTTATCACTGGCAGTCTCCTTTGAGTTCCCGGCCGGACCGCTGGCAACAAAGGATAAGGGTTGCGCTCGTTGCGGGACTTAACCCAACATTTCACAACACGAGCTGACGACAGCCATGCAGCAC > 1:1038370/1‑143 CATCCCCACCTTCCTCCAGTTTATCACTGGCAGTCTCCTTTGAGTTCCCGGCCGGACCGCTGGCAACAAAGGATAAGGGTTGCGCTCGTTGCGGGACTTAACCCAACATTTCACAACACGAGCTGACGACAGCCATGCAGCAC > 1:994203/1‑143 ATCCTCACCTCCCTCCAGTTTATCCCTGGCAGTCTCCTTTGAGTTCCCGGCCGGACCGCTGGCAACAAAGGATAAGGGTTGCGCTCGTTGCGGGACTTAACCCAACATTTCACAACACGAGCTGACGACAGCCATGCAGCACC < 1:20992/143‑1 ATCCCCACCTTCCTCCAGTTTATCACTGGCAGTCTCCTTTGCGTTCCCGGCCGGACCGCTGGCAACCAAGGATCAGGGTTGCGCTCGTTGCGGGGCTGACCCCCACATTCCACAACACGAGCTGCCGCCACCCACGCCGCACC > 2:1103486/1‑143 ATCCCCACCTTCCTCCAGTTTATCACTGGCAGTCTCCTTTGAGTTCCCGGCCGGACCGCTGGCAACAAAGGATAAGGGTTGCGGTCGTTGCGGGACTTAAGCCAACATTTCACAAGACGAGCTGGCGACAGGCATGGAGCACg > 1:96543/1‑142 ATCCCCACCTTCCGCCAGTTTATCACTGGCAGTCTCCTTTGAGTTCCCGCCCGGACCGCTGGCCACAAAGGATAAGGGTTGCGCTCGTTGCGGGACTTAACCCCACATTTCACAACCCGCGCTGACGCCAGCCATCCAGAACC > 2:489396/1‑143 TCCCCACCTTCCTCCAGTTTATCCCTGGCAGTCTCCTTTGAGTTCCCGGCCGGACCGCTGGCAACAAAGGCTAAGGGTTGCGCTCGTTGCGGGACCTCACCCAACCTTTCACCACACGAGCTGACGACAGCCCTCCACCACCT > 1:1249619/1‑143 GTCGTCAGCTCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGCGGTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACTGGAGGAAGGTGGGGATGACGTCAAGTCATC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/224831‑224973‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtcatcCCCACCTTCCTCCAGTTTATCACTGGCAGTCTCCTTTGAGTTCCCGGCCGGACCGCTGGCAACAAAGGATAAGGGTTGCGCTCGTTGCGGGACTTAACCCAACATTTCACAACACGAGCTGACGACAGCCATGCAGCACCT > NC_000913/2729972‑2730112 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |