| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 3564096 = | 88 (1.170) | 4 (0.060) | 4/268 | 10.9 | 4.4% | intergenic (‑91/+38) | yzgL/glgP | pseudogene, periplasmic solute binding protein homology/glycogen phosphorylase |
| ? | NC_000913 | 3564118 = | 89 (1.240) | intergenic (‑113/+16) | yzgL/glgP | pseudogene, periplasmic solute binding protein homology/glycogen phosphorylase | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
GACCGCAAAAGCGATGCTGAACATTGCCAATATGGGCTACTTCTCTTCTGACCGTACTATCAAAGAGTACGCCGATCATATCTGGCATATCGATCCGGTGAGATTGTAAGTTCACCAATAAATAGAACGGGGCCAAAGGGTCCCGTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/3564242‑3564096‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cccgttCTATTTATTGGTGAACTTACAATCTCACCGGATCGATATGCCAGATATGATCGGCGTACTCTTTGATAGTACGGTCAGAAGAGAAGTAGCCCATATTGGCAATGTTCAGCATCGCTTTTGCGGTCCACTCTTCCTGAA > NC_000913/3564118‑3564255 GACCGCAAAAGCGATGCTGAACATTGCCAATATGGGCTACTTCTCTTCTGACCGTACTATCAAAGAGTACGCCGATCATATCTGGCATATCGATCCGGTGAGATTGTAAGTTCACCAATAAATAGAACGGGGCCAACGGGTCC > 1:159786/1‑143GACCGCAAAAGCGATGCTGAACATTGCCAATATGGGCTACTTCTCTTCTGACCGTACTATCAAAGAGTACGCCGATCATATCTGGCATATCGATCCGGTGAGACTGTAAGTTCACCAATAAATAGAACGGGGCCAAAGGGTCC > 2:1284229/1‑143 ACCAATAAATAGAACGGGGCCAAAGGGTCCCGTTCTATTTATTGGTGAACTTACAATCTCACCGGATCGATATGCCAGATATGATCGGCGTACTCTTTGATAGTACGGT < 1:85077/109‑1 ACCAATAAATAGAACGGGGCCAAAGGGTCCCGTTCTATTTATTGGTGAACTTACAATCTCACCGGATCGATATGCCAGATATGATCGGCGTACTCTTTGATAGTACGGT > 2:85077/1‑109 CAATAAATAGAACGGGGCCAAAGGGTCCCGTTCTATTTATTGGTGAACTTACAATCTCACCGGATCGATATGCCAGATATGATCGGCGTACTCTTTGATAGTACGGTCAGAAGAGAAGTAGACCATATTGGCAATGTTCAGCA > 1:632183/1‑143 GAACGGGGCCAAAGGGTCCCGTTCTATTTATTGGTGAACTTACAATCTCACCGGATCGATATGCCAGATATGATCGGCGTACTCTTTGATAGTACGGTCAGAAGAGAAGTAGCCCATATTGGCAATGTTCAGCATCGCTTTTG > 1:288734/1‑143 ccgGTTCTAGTGATTGGTGAACTTACAATCGCACCGGATCGATATGCCAGATATGATCGGCGTACTCTTTGATAGTACGGTCAGAAGAGAAGTAGCCCATATTGGCAATGTTCAGCATCGCTTTTGCGGTCCACTCTTCCTGA < 2:144391/140‑1 CCCGTTCTATTTATTGGTGAACTTACAATCTCACCGGATCGATATGCCAGATATGATCGGCGTACACTTTGATAGTACGGTCACCAGAGAAGTAGCCCATCTTGACAATATTACGCCTCGCCTTTGCGGTCCACTCTGCCAGA > 2:19964/1‑143 CCGTTCTATTGATTGGTGAACTTACAATCTCACCGGATCGATATGCCAGATATGATCGGCGTACTCTTTGATAGTACGGTCAGAAGATAAGTAGCCCATATTGGCAATGTTCAGCATCGCTTTTGCGGTCCACTCTTCCTGAA < 1:1212225/143‑1 GACCGCAAAAGCGATGCTGAACATTGCCAATATGGGCTACTTCTCTTCTGACCGTACTATCAAAGAGTACGCCGATCATATCTGGCATATCGATCCGGTGAGATTGTAAGTTCACCAATAAATAGAACGGGGCCAAAGGGTCCCGTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/3564242‑3564096‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cccgttCTATTTATTGGTGAACTTACAATCTCACCGGATCGATATGCCAGATATGATCGGCGTACTCTTTGATAGTACGGTCAGAAGAGAAGTAGCCCATATTGGCAATGTTCAGCATCGCTTTTGCGGTCCACTCTTCCTGAA > NC_000913/3564118‑3564255 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |