New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 394668857 (0.950)9 (0.160) 5/270 7.8 14.2% intergenic (+81/‑12) rrlC/rrfC 23S ribosomal RNA of rrnC operon/5S ribosomal RNA of rrnC operon
?NC_000913 = 4171601 NA (NA)intergenic (+57/‑36) rrlB/rrfB 23S ribosomal RNA of rrnB operon/5S ribosomal RNA of rrnB operon
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GGTGTGTAAGCGCAGCGATGCGTTGAGCTAACCGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAAGCA  >  NC_000913/3946546‑3946830
                                                                                                                                              |                                                                                                                                              
ggTGTGTAAGCTCAGCGATGCGTTGAGCTAACAGGTACTAAAGAACCGTGAGGCGTAACCTTACAACGCCGAAGATGTTGTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCtgat                                                                                                                                                <  1:11624/143‑1 (MQ=11)
    tgtAAGCGCAGCGATGCGTTGAGCTAACCGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGaaa                                                                                                                                            <  1:792492/143‑1 (MQ=35)
    tgtAAGCGCAGCGATGCGTTGAGCTAACCGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGaaa                                                                                                                                            <  1:757635/143‑1 (MQ=34)
     gtAAGCGCAGCGATGCGTTGAGCTAACCGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGGAAc                                                                                                                                           >  1:265876/1‑143 (MQ=21)
        aGCGCAGCGATGCGTTGAGCTAACCGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGa                                                                                                                                        >  2:466229/1‑143 (MQ=35)
          cgcAGCGATGCGTTGAGCTAACCGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAAt                                                                                                                                      >  2:315976/1‑143 (MQ=34)
                gATGCGTTGAGCTAACCGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCt                                                                                                                                <  1:330555/143‑1 (MQ=35)
                     gTTGAGCTAACCGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGAAGAAACAGAATATGCCTggcgg                                                                                                                           >  2:973305/1‑143 (MQ=21)
                       tGAGCTAACCGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCTGGCGGcc                                                                                                                         >  1:375380/1‑143 (MQ=35)
                       tGAGCTAACCGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTACCTGGCGccc                                                                                                                         >  1:526319/1‑143 (MQ=25)
                            tAACGGGGAATAATGAACCGTGAGGCGTAACCTTACAAAGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCTGGCGGCCGTAgc                                                                                                                    <  1:668105/143‑1 (MQ=11)
                              aCCGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCTGGCGGCCGTAgcgc                                                                                                                  >  2:301742/1‑143 (MQ=35)
                                 ggaaCTAATGAACCGTGAGGCATAACCATAGAACGCCGAAGAGGTGTTGGCGGAGGAGAGAAGATTCTCAGACTGAAACAGATTAAATCAGAACGCAGAAGCGAGCAGATGAAACAGAATCTGACGAGCAGCCGTACcgcgct                                                                                                               >  2:1045368/4‑141 (MQ=2)
                                 ggTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCTGGCGGCCGTAGCGCggt                                                                                                               <  1:324642/143‑1 (MQ=35)
                                  gTACTAGTGCACCGTGAGGCTTAACCTTACAACGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCTGGCGGCCGTAGCGCggtg                                                                                                              <  2:509353/143‑1 (MQ=25)
                                  gTACTAATGACCCGTGAGGCTTAACCTTACAACGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCTGGCGGCCGTAGCGCggtg                                                                                                              <  2:659211/143‑1 (MQ=21)
                                    aCTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGATGATAGGAAGGGTGATGGAAGCTTTTCGCCCGGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCTGGCGGCCGTAGCGCggtggt                                                                                                            <  1:1033680/143‑1 (MQ=11)
                                      tAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTcc                                                                                                          >  2:725557/1‑143 (MQ=34)
                                      tAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTcc                                                                                                          >  1:664908/1‑143 (MQ=35)
                                        aTGAACCGTGAGGCTTAACCTTACAACGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTAGGCCTGATGCATATTGTATAAAAGTCCATAAGCGGTCTGATGAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCa                                                                                                        <  2:485710/143‑1 (MQ=11)
                                             ccGTGAGGCTTAACCTTACAACGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATCTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGa                                                                                                   >  2:961551/1‑143 (MQ=25)
                                                tGAGGCTTAACCTTACAACGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGAccc                                                                                                >  1:949310/1‑143 (MQ=35)
                                                    gCTTAACCTTACAACGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCTGGCGGCCGTAGCGCGGAGGTCCCACCTGACCCCATg                                                                                            >  2:930322/1‑143 (MQ=25)
                                                     cTTAACCTTACAACGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATGAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCTGGCGGCAGTGGCGCGGGGGTACCACCTGACGCCATGc                                                                                           >  1:884451/1‑143 (MQ=11)
                                                         aCCTGACAACGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGaa                                                                                       <  2:232037/143‑1 (MQ=25)
                                                           cTTACAACGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACt                                                                                     <  2:482344/143‑1 (MQ=34)
                                                            ttACAACGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTc                                                                                    >  1:886467/1‑143 (MQ=35)
                                                                aaCGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGGAGCGGTCTGATGACACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGaa                                                                                >  1:356938/1‑143 (MQ=25)
                                                                aaCGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGaa                                                                                >  1:823729/1‑143 (MQ=35)
                                                                aaCGCCGAAGATGTTTGGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGaa                                                                                <  1:758186/143‑1 (MQ=25)
                                                                 aCGCCGAACATGTTTTGGCGGATGAGACAAGATTGTCAGCCTGATACAGATGAAATCAGAACGCAGAAGCGGTCTGATGAAACCGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAg                                                                               <  2:478780/143‑1 (MQ=11)
                                                                            gTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGCTGACGCTCCGAACTCAGGAGCGAAACACCgg                                                                    >  2:763401/1‑142 (MQ=11)
                                                                             ttttGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTa                                                                   <  1:703650/143‑1 (MQ=32)
                                                                              tttGGCGGATGAGAGAAGATGTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAg                                                                  <  2:883466/143‑1 (MQ=17)
                                                                                 ggCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAgcgc                                                               >  2:624537/1‑143 (MQ=32)
                                                                                       tGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACCCAGAAGAGAAACGCCGTAGCGCCgcggg                                                         >  2:978161/1‑139 (MQ=12)
                                                                                           agaagaTTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAgt                                                     >  1:478698/1‑143 (MQ=32)
                                                                                            gaagaTTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCCGCAGTGAAACGCCCTAGCGCCGCTGGTAgcg                                                    >  2:777854/1‑141 (MQ=255)
                                                                                              agaTTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGtgtg                                                  <  1:330118/143‑1 (MQ=32)
                                                                                               tgtccgcAGCCTGATACAGATTAAAGCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTgg                                                 <  1:444188/137‑1 (MQ=12)
                                                                                                gttgtCAGCCTGATTCGGGTTAAATCAGAACGCAGAAGCTGTCTGATGAAACAGGATTTGCCTGGCGGTCGTAGCGCGGTGGTCCCACCTGGCCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGTCGATGGTAGTGTggg                                                <  2:393747/139‑1 (MQ=11)
                                                                                                aTTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAGCGCCGTAGCGCCGATGGGAGTGTggg                                                >  1:964864/1‑143 (MQ=17)
                                                                                                      acgcggATGCAGCTGAAATCATAACGGAGGCGCGGGCTGATGAAGCAGAATTTGCCTGGCGGCCGGAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTcc                                          <  2:110687/138‑1 (MQ=11)
                                                                                                        ccTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGCGAAACGCCGTAGCGCCGATGGTAGGGTGGGGACTgccc                                        >  2:889194/1‑143 (MQ=255)
                                                                                                         cTGATACAGAATAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCACCGATGGTAGTGTGGGGTCTCCCCa                                       <  1:309139/143‑1 (MQ=17)
                                                                                                          tGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAGAGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCAt                                      <  1:751107/143‑1 (MQ=17)
                                                                                                          tGAGACAGATTAAATCAGAACGCAAAAGCGGACACATGGGAGAAAATTTGGCTGGCGGCCGGAGCACGGTAGTCCCACCTGACCCCATGCCGAACTCAGACGTGAAACGCCGCAGCGCCCCTGGTAGTGTGGCGCCTCCCCAt                                      >  2:185437/1‑143 (MQ=2)
                                                                                                             tACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCg                                   <  2:949310/143‑1 (MQ=32)
                                                                                                              tcacatgaaaTCAGAACGCAGAAGCGGGCTGAGGGATCAGAATCTGCCTGGCGGCCCTAGCGCGGTGGTCCCACCTGACCCCAGGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCga                                  <  2:124493/136‑1 (MQ=11)
                                                                                                              aCAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCga                                  <  1:315976/143‑1 (MQ=32)
                                                                                                              aCAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCga                                  >  2:339345/1‑143 (MQ=32)
                                                                                                                     acaTCAGACCGCAGCAGCGGTCTGATGCAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAgg                           <  1:381865/141‑1 (MQ=12)
                                                                                                                     aaaTCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCCCGGAACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAgg                           <  1:799718/143‑1 (MQ=255)
                                                                                                                              cGCAGAAGCGGTCGGGTGAAACAGAAGTGGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCa                  <  2:413879/143‑1 (MQ=255)
                                                                                                                               gCAGAAGCGGTCTGATGAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAg                 <  1:82966/143‑1 (MQ=32)
                                                                                                                                 ggacgCGGTCGGATGAAACCGCGTTTGCCGGGCGGCCGTAGCGCGGTGGTCCCACCTGGCCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGc               <  2:280478/139‑1 (MQ=11)
                                                                                                                                            gatgaAACATGATTTGCCTCGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAAg    <  2:978424/143‑1 (MQ=12)
                                                                                                                                              tgaAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAAGCa  <  1:491638/143‑1 (MQ=31)
                                                                                                                                              |                                                                                                                                              
GGTGTGTAAGCGCAGCGATGCGTTGAGCTAACCGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAAGCA  >  NC_000913/3946546‑3946830

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.