Predicted mutation
evidence seq id position mutation annotation gene description
JC JC NC_000913 1,293,032 IS1 (–) +8 bp intergenic (‑110/‑488) hns ← / → tdk global DNA‑binding transcriptional dual regulator H‑NS/thymidine kinase/deoxyuridine kinase

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 257908 =NA (NA)76 (1.260) 63/282 0.0 100% noncoding (768/768 nt) IS1 repeat region
?NC_000913 = 1293039 0 (0.000)intergenic (‑117/‑488) hns/tdk global DNA‑binding transcriptional dual regulator H‑NS/thymidine kinase/deoxyuridine kinase
* ? NC_000913 1293032 =0 (0.000)78 (1.300) 58/282 0.0 100% intergenic (‑110/‑495) hns/tdk global DNA‑binding transcriptional dual regulator H‑NS/thymidine kinase/deoxyuridine kinase
?NC_000913 = 1979270 NA (NA)noncoding (1/768 nt) IS1 repeat region

Only 100 of 151 total aligned reads displayed.

TTCAGAATTTTAAGTGCTTCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATGGGGAGATTATCGTAGGCTGACGACC  >  NC_000913/1292897‑1293180
                                                                                                                                              |                                                                                                                                             
tgtccggcggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTgccg                                                                                                                                               <  1:534971‑M1/8‑1 (MQ=255)
 tCAGAATTTTAAGTGCTTCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGg                                                                                                                                              >  2:990585‑M2/1‑142 (MQ=255)
        tttAAGTGCTTCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatga                                                                                                                                       >  1:994176‑M2/1‑135 (MQ=255)
           aaGTGCTTCGCTCATTGTAGTCATCGCAAACTTACATAGGGGTGGTTTCATGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactc                                                                                                                                    >  1:404875‑M2/1‑132 (MQ=255)
             ttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATaagtatat                                                                                                                                  <  1:886207‑M1/21‑3 (MQ=255)
               ttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCttt                                                                                                                                >  1:601071‑M1/121‑143 (MQ=255)
                   cgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTttcct                                                                                                                            <  1:888674‑M1/27‑3 (MQ=255)
                   cGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatggctccaactcat                                                                                                                            <  1:328838‑M2/143‑20 (MQ=255)
                     cTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTGAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattg                                                                                                                          >  1:719325‑M2/1‑122 (MQ=255)
                      tacgcacccccccgtcagtagctgaacaggagggacagctgatagaaagagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATaaa                                                                                                                         >  1:246200‑M1/114‑143 (MQ=255)
                          caccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCACTAAATATCTTTTCATAAAATTa                                                                                                                     <  1:711551‑M1/34‑1 (MQ=255)
                            ccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGc                                                                                                                   <  1:183482‑M1/36‑1 (MQ=255)
                             caccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGcc                                                                                                                  <  1:709365‑M1/37‑1 (MQ=255)
                             caccccgtcagtagctgaacaggagggacagatgatagaaacagaagccactagagcacctcaaaaacaccatcatacaataaatcagtaagatggcagaatcaccTTGTACCACCAATAAAAATCTTTTCATAAAattacac                                                                                                                  <  2:672628‑M1/37‑4 (MQ=255)
                             cacaccggcagtatctgaacaggagggacagctgatacaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGcc                                                                                                                  >  2:933821‑M1/107‑143 (MQ=255)
                               taATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgtttt                                                                                                                >  1:97104‑M2/1‑112 (MQ=255)
                                cccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATCTCTTTTCATAAACTTAGCCAGa                                                                                                               <  2:514386‑M1/40‑1 (MQ=255)
                                   gtcagtagctgaacaggagggacagctgatagagacgtaggccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGaaaa                                                                                                            <  2:388899‑M1/43‑1 (MQ=255)
                                   gtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGaaaa                                                                                                            >  1:858282‑M1/101‑143 (MQ=255)
                                     cAATCTTATATTGGGGTGGTTGGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttc                                                                                                          >  1:605647‑M2/1‑106 (MQ=255)
                                      aaaGTTATATTGGGGTAGTTTGTTGAGGTAATAATAGAGTCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttca                                                                                                         >  1:491486‑M2/1‑105 (MQ=255)
                                          ttATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATATTGGGCCGggtaatgactcgaacttattgatcgtgatctatggtcatata                                                                                                     <  2:874342‑M2/143‑43 (MQ=255)
                                           tataTTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataa                                                                                                    <  1:958512‑M2/143‑44 (MQ=255)
                                            tgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCa                                                                                                   <  1:923902‑M1/52‑1 (MQ=255)
                                            tgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCa                                                                                                   <  1:1584‑M1/52‑1 (MQ=255)
                                              atTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgc                                                                                                 >  2:204264‑M2/1‑97 (MQ=255)
                                              aacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCata                                                                                                 <  2:317886‑M1/54‑1 (MQ=255)
                                               ttGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcc                                                                                                >  2:491363‑M2/1‑96 (MQ=255)
                                               acaggagggacagctgatagaaacaggagccactggagcacctccaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCatat                                                                                                >  1:54449‑M1/89‑143 (MQ=255)
                                                caggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGAGCCGACCACAACAAACTTTTCTTAAAATTAGCCAGAAAAGACGCGGCAtata                                                                                               >  1:749504‑M1/88‑143 (MQ=255)
                                                  ggagggacagctgatagaaacagaagccactggaggacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGAAGCGGCATATAGc                                                                                             <  2:971426‑M1/58‑1 (MQ=255)
                                                   ggtggtTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgat                                                                                            >  1:227427‑M2/1‑92 (MQ=255)
                                                     gggacagcggatagaaacagaagccacgggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCt                                                                                          >  2:639238‑M1/83‑143 (MQ=255)
                                                       aaccgctgatagacacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAAGTAGCCAGAAAAGACGCGGCATATAGCCCTAt                                                                                        >  2:146169‑M1/81‑143 (MQ=255)
                                                         tggtgggggtaataatAGGGTCTTAAGTTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgacttt                                                                                      >  2:703957‑M2/8‑86 (MQ=255)
                                                          agctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcctcaccTTGTGCCGCCAATAAATATCTTTTCATAAACTTAGCCCGAAAAGACGCGGCATATAGCCCTctttc                                                                                     <  1:239374‑M1/66‑2 (MQ=255)
                                                             tgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTacac                                                                                  <  1:998636‑M1/69‑1 (MQ=255)
                                                               aGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatg                                                                                <  1:804533‑M2/143‑64 (MQ=255)
                                                                 agaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCCCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACACGGCATATACCCATATTTACACCgat                                                                              <  2:65184‑M1/73‑1 (MQ=255)
                                                                   aataatAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagc                                                                            <  2:116734‑M2/143‑68 (MQ=255)
                                                                     acagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGAtt                                                                          <  1:623102‑M1/77‑1 (MQ=255)
                                                                      aataGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCGGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgtagcgca                                                                         <  2:334435‑M2/143‑71 (MQ=255)
                                                                       ataGAGCCCTAAATTCAGTTGTGCAATCGCCAGGACTGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctcca                                                                        >  2:697043‑M2/1‑72 (MQ=255)
                                                                        taGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGtgtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccac                                                                       >  2:858156‑M2/1‑71 (MQ=255)
                                                                        gaagccactggagcagctcaaaaacaccatcgtacgctaaatcgggaagttggcagcatcaccTTGTGCGGCCAATAAATATCTTTTCATAAAAGTGGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCg                                                                       >  2:4429‑M1/64‑143 (MQ=255)
                                                                         agagCCTTAAATTCAGTTGTGCAATAGCCAGGACTGTAAGGCATTCCATATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgctagtgtcgtatggtcagataatgcccgatgactttgtcatgcagctccaac                                                                      <  2:713512‑M2/143‑74 (MQ=255)
                                                                           gccactggagcacctcaaaaacaccatcatacactaaagcggtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCgcag                                                                    >  1:333064‑M1/61‑143 (MQ=255)
                                                                           agCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAGGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactgtgacatgcagcgccaccga                                                                    <  2:58860‑M2/143‑76 (MQ=255)
                                                                            gCCTTAACTTTAGTTGTGCAATCGCCAGGAATGTAAGGAATTCAAAGTTGTTCTTTATTTTGTGCCGggtaatgactccgactgattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgat                                                                   >  2:641104‑M2/1‑67 (MQ=255)
                                                                            gCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgat                                                                   <  2:495325‑M2/143‑77 (MQ=255)
                                                                            gCCTTAAATTCAGTTGTGCAAGAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgat                                                                   >  2:212384‑M2/1‑67 (MQ=255)
                                                                               ttAAATTCAGTTGTGCCATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgatttt                                                                >  2:812216‑M2/1‑64 (MQ=255)
                                                                               ttAAATTCAGTTGTGCAATAGCCAGGAATGTCAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtcctgactccaacttattgatagaattatatgttcagataatgcccgatgactttgtcatgcagctccaccgctttt                                                                <  1:162907‑M2/143‑80 (MQ=255)
                                                                                tAAATTCAGTTGTGCAATAGTCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttg                                                               >  2:961461‑M2/1‑63 (MQ=255)
                                                                                tAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttg                                                               >  2:625491‑M2/1‑63 (MQ=255)
                                                                                  gagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAACTACCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGa                                                             >  1:686350‑M1/54‑143 (MQ=255)
                                                                                    gcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAgg                                                           <  2:941547‑M1/92‑1 (MQ=255)
                                                                                    gcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAgg                                                           >  2:206745‑M1/52‑143 (MQ=255)
                                                                                        ctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCCGCACGTGAGGTTaa                                                       <  2:906123‑M1/96‑1 (MQ=255)
                                                                                         tcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTacac                                                                                  >  2:37812‑M1/47‑115 (MQ=255)
                                                                                         tcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTacac                                                                                  <  1:37812‑M1/69‑1 (MQ=255)
                                                                                         tcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTaaa                                                      <  1:428224‑M1/97‑1 (MQ=255)
                                                                                                aTAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgactt                                               <  1:747678‑M2/143‑97 (MQ=255)
                                                                                                 tAGTCATGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGTCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttc                                              >  1:878442‑M2/1‑46 (MQ=255)
                                                                                                     cAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtc                                          >  1:2865‑M2/1‑42 (MQ=255)
                                                                                                      aGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgctgactttatcatgccgctccccccattttcagcacgacagcaacttccgtcg                                         <  2:504139‑M2/143‑103 (MQ=255)
                                                                                                         acactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGt                                      <  1:101750‑M1/113‑1 (MQ=255)
                                                                                                         acactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGt                                      <  1:882583‑M1/113‑1 (MQ=255)
                                                                                                          aTGGAAGGAATTCAAAATTGTTCTATATGTTGGGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagc                                     >  1:529210‑M2/1‑37 (MQ=255)
                                                                                                           tGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagcc                                    <  1:492489‑M2/143‑108 (MQ=255)
                                                                                                           tGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagcc                                    >  1:628897‑M2/1‑36 (MQ=255)
                                                                                                           actaaatcagtaagttggcagcatcaccTTGTgccgcc                                                                                                                                             >  2:78163‑M1/29‑38 (MQ=255)
                                                                                                           actaaatcagtaagttggcagcatcaccTTGTgccgcc                                                                                                                                             <  1:78163‑M1/10‑1 (MQ=255)
                                                                                                           actaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTca                                    <  2:455011‑M1/115‑1 (MQ=255)
                                                                                                           actaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTca                                    <  2:621500‑M1/115‑1 (MQ=255)
                                                                                                              aaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACAt                                 <  1:1016268‑M1/118‑1 (MQ=255)
                                                                                                              aaGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtg                                 <  2:179253‑M2/143‑111 (MQ=255)
                                                                                                               aGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccgacttatcgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgc                                >  1:202988‑M2/1‑32 (MQ=255)
                                                                                                               aGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgc                                >  2:708131‑M2/1‑32 (MQ=255)
                                                                                                                ggAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgctgactttgtcatgcagcgcccccgattttgagaccgacacccacgcccgtccccgccgcgcc                               <  2:183236‑M2/143‑113 (MQ=255)
                                                                                                                  aaTTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccag                             >  2:262401‑M2/1‑29 (MQ=255)
                                                                                                                    gtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATg                           <  1:200763‑M1/124‑1 (MQ=255)
                                                                                                                     taagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATgg                          >  1:941547‑M1/19‑143 (MQ=255)
                                                                                                                     taaaaatgATTATTTATTTTGTGCCGggtaatgacgccaactgattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtg                          >  1:10575‑M2/3‑26 (MQ=255)
                                                                                                                      cAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaactgattgatagtgttttatgttcagataatgcccgatgactttgtgatgcagctccaccgagtttgagaacgacagcgacttccggcccagccgtgccaggtgc                         <  1:843109‑M2/143‑119 (MQ=255)
                                                                                                                      aagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCTTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATggg                         >  2:139963‑M1/18‑143 (MQ=255)
                                                                                                                       agttggcagcgctaccTTGGGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATgggg                        >  2:534971‑M1/17‑143 (MQ=255)
                                                                                                                       aaaaTTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgct                        <  1:533235‑M2/143‑120 (MQ=255)
                                                                                                                       aaaaTTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgacgttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgct                        <  1:277233‑M2/143‑120 (MQ=255)
                                                                                                                         aaTTGTTCTTTATTTGGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgc                      >  1:917505‑M2/1‑22 (MQ=255)
                                                                                                                              agcatcaccTTGCGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATGGGGAGATTAt                 >  1:181080‑M1/10‑143 (MQ=255)
                                                                                                                                  tcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGACAAGACGCGGCATATAGCCGTATTTACACCGTTGATTTCGCAGCACGTGAGGTTAAACCTTCCTGATTCATGTCACATTTTATGGGGAGCTTATCGTa             <  1:356649‑M1/138‑1 (MQ=255)
                                                                                                                                   tgtttcgtGTCGggtaatgagtccaacttattgatagtgtgttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagattca            >  2:900961‑M2/3‑12 (MQ=255)
                                                                                                                                    cttttgTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagattcag           >  2:1014681‑M2/2‑11 (MQ=255)
                                                                                                                                    aTTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagattcag           >  1:12771‑M2/1‑11 (MQ=255)
                                                                                                                                         gtgCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATGGGGAGATTATCGTAGGCTgac      <  1:649320/143‑1 (MQ=255)
                                                                                                                                          tgCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgactcagaggcaggttatg     <  2:213141‑M2/143‑139 (MQ=255)
                                                                                                                                            ccGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgat                                                                   <  1:255194‑M2/79‑77 (MQ=255)
                                                                                                                                            ccGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgat                                                                   >  2:255194‑M2/1‑3 (MQ=255)
                                                                                                                                             cGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagattcaggttatgccg  >  1:728037‑M2/1‑2 (MQ=255)
                                                                                                                                              |                                                                                                                                             
TTCAGAATTTTAAGTGCTTCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATGGGGAGATTATCGTAGGCTGACGACC  >  NC_000913/1292897‑1293180

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.