Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	NC_000913	3,815,859	Δ82 bp		[rph]–[rph]	[rph], [rph]

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	3815859	3815940	82	69 [0]	[0] 69	[rph]–[rph]	[rph],[rph]

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 3815858	0 (0.000)	62 (1.110)	56/262	0.0	100%	pseudogene (24/48 nt)	rph	ribonuclease PH (defective);enzyme; Degradation of RNA; RNase PH
	?	NC_000913	3815941 =	0 (0.000)					pseudogene (609/669 nt)	rph	ribonuclease PH (defective);enzyme; Degradation of RNA; RNase PH

ACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCTACCATCCCT  >  NC_000913/3815799‑3816082                                                                                                                                               |                                                                                                                                              acacctgcttgctaagcgcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacgtttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcc                                                                                                                                               <  2:1063852‑M2/1‑1 (MQ=255)    cctgcttgctaagcgcaaatccaataaaccgtcgctgatatggtttcatgccttcgctcctcatcttacttttcgacagacaaaaacaaggcgactcctcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTc                                                                                                                                            <  2:548131‑M2/4‑1 (MQ=255)     cggcttgcgaagcgcaaattcaatacactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTcc                                                                                                                                           <  1:8887‑M2/5‑1 (MQ=255)      tgcttgctaagctcacattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacacacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcTGTccc                                                                                                                                          <  2:907880‑M2/6‑1 (MQ=255)      tgcgtgctaagcgtaaattcaatatcctggtgccgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTccc                                                                                                                                          <  2:300700‑M2/6‑1 (MQ=255)          tgctaagcgcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcaccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGc                                                                                                                                      >  2:98507‑M2/134‑143 (MQ=255)                 cgcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCaa                                                                                                                               >  1:756766‑M2/127‑143 (MQ=255)                  gcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttaccagcgccgccttctgcCGCACCCTGCACTTCCat                                                                                                                              >  2:752771‑M2/126‑143 (MQ=255)                    aaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAatga                                                                                                                            >  2:969495‑M2/124‑143 (MQ=255)                    aaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgcctcctgcCGTCCcctggactgaaacga                                                                                                                            >  2:1037295‑M2/124‑136 (MQ=255)                     aatgcaataaactggcgctgagatggtttcatgcctccgctcctcatcttacttttctacagacaaaaaaaaggcgacgcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAatgat                                                                                                                           <  2:406770‑M2/21‑1 (MQ=255)                       ttcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATgc                                                                                                                         <  1:1021505‑M2/23‑1 (MQ=255)                       ttcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATgc                                                                                                                         >  1:565016‑M2/121‑143 (MQ=255)                           ataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGccc                                                                                                                     >  2:289997‑M2/117‑143 (MQ=255)                            taaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCCCTTCATTGATGCgcccc                                                                                                                    >  1:12448‑M2/116‑142 (MQ=255)                               actggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCt                                                                                                                 >  1:1009058‑M2/113‑143 (MQ=255)                                 tggcgttgctatggtttcatgccttcgctcctcatcttactgttctacagacaaaacaaaggcgactcgtcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTc                                                                                                               <  2:810179‑M2/33‑1 (MQ=255)                                 tggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatccgtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTc                                                                                                               >  2:324594‑M2/111‑143 (MQ=255)                                   gcgctgatatggtttcatgccttcgctcctcatcttactttcctaccgacaaaaaaaaggcgactctacagtcgccttaaaaatcagtttgccagcgcagccttctgcCGTCCCCTCCACCTCAATAATGCGcccgtccgcgg                                                                                                             >  2:332435‑M2/109‑138 (MQ=255)                                    cgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGt                                                                                                            <  1:280442‑M2/36‑1 (MQ=255)                                    cgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGt                                                                                                            <  1:287456‑M2/36‑1 (MQ=255)                                     gctgatatggtttcatgtctgcgcgcctcatcttacgtttctacagacaaaaaaaaggcgactcatcaggcggcttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGtc                                                                                                           <  2:986207‑M2/37‑1 (MQ=255)                                         atatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGGTGCGCCCGTCTccggtcctgc                                                                                                       >  1:309268‑M2/103‑139 (MQ=255)                                              gtttcatgccttcgctcctcatcttacttttctacagacaaaaaaacggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGCCATCACTACg                                                                                                  >  2:2678‑M2/98‑143 (MQ=255)                                               tttcatgcctgcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGt                                                                                                 <  2:232614‑M2/47‑1 (MQ=255)                                                ttcatgcgttggctcctcagcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGtt                                                                                                <  1:319855‑M2/48‑1 (MQ=255)                                                 tcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTc                                                                                               >  2:390324‑M2/95‑143 (MQ=255)                                                   ctgccttcgctcctcctcttacttttctaccgacaagaaaaaggcgactcagcagtcgcctcaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCAt                                                                                             <  2:710293‑M2/51‑1 (MQ=255)                                                   atgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCAt                                                                                             >  1:678172‑M2/93‑143 (MQ=255)                                                     gccttcgcgcgtcatcttgcttctctacaaacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGt                                                                                           <  2:923439‑M2/53‑1 (MQ=255)                                                        ttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatccgtcgccttaaaaatcactttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCgg                                                                                        >  1:366846‑M2/88‑143 (MQ=255)                                                             tcctcatcttacttttctacagacaaaaaaaagacgacgcagcaggcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTctct                                                                                   >  1:464555‑M2/83‑143 (MQ=255)                                                                  atcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTGTTCGGTCATCACTACGTTCATGTCGGTCTCTCCGGc                                                                              >  1:333479‑M2/78‑143 (MQ=255)                                                                   tcttatttttctatatacaaaaatagggcggttcatcagtcgctttaaaactcggtttgctagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTTATCACTACGTTCATGTCGGTCTCTGCGGCa                                                                             <  2:379980‑M2/67‑1 (MQ=255)                                                                     ttacttttctacggacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCaga                                                                           <  1:647670‑M2/69‑1 (MQ=255)                                                                         ttttctacagacaaaaaaaatgcgactcatcaatcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCt                                                                       >  2:570970‑M2/71‑143 (MQ=255)                                                                         ttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaactcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTGCTCACTACGGTCAGTCCGGACTCTGCggcatagccc                                                                       >  1:100495‑M2/71‑140 (MQ=255)                                                                         ttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCt                                                                       <  1:172643‑M2/73‑1 (MQ=255)                                                                           tcctccagactaaaaaaaggcgactcatcagtcgctttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTc                                                                     <  2:725104‑M2/75‑1 (MQ=255)                                                                              ttcatacaaaaaataggcgactcatcagtcgccttaaaaagcggttggccagcgccgccttctgcCATCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAAc                                                                  <  1:877882‑M2/78‑1 (MQ=255)                                                                                 acacaaaaaaaaggcgactcatcagtcgccgtaaaaagcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTa                                                               <  1:656721‑M2/81‑1 (MQ=255)                                                                                   acaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACATAtt                                                             >  2:743772‑M2/61‑143 (MQ=255)                                                                                    caacaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTc                                                            <  2:135833‑M2/84‑1 (MQ=255)                                                                                     aaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgaCGTCCCCTGCACTTCACTGATGCGCCCGTCTTCGGTCATACCTCCGTTCATGTCGGTCTCTGCTGCACAGTATTCAacctactgc                                                           >  2:1008617‑M2/59‑139 (MQ=255)                                                                                      aaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTAAATGATGAGGCAGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGCGTCTTCAACGTATtccg                                                          >  1:505084‑M2/58‑142 (MQ=255)                                                                                         aaaaggcgcctcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGAt                                                       <  1:490527‑M2/89‑1 (MQ=255)                                                                                         aaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCACTGCACTTCAATGCTGCGCCCGTCTTCGGTCGTCACCACCTTCTTGTCGGTCTCAGCGGCAGAGTATTCAACGTATTCCAGAt                                                       >  1:350577‑M2/55‑143 (MQ=255)                                                                                              gcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCaa                                                  >  1:37681‑M2/50‑143 (MQ=255)                                                                                                gactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAAc                                                <  2:565016‑M2/96‑1 (MQ=255)                                                                                                   tcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTATTCAACGTATTCCACAGCGCCAACCGc                                             >  2:703652‑M2/45‑143 (MQ=255)                                                                                                    catcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCt                                            <  1:969495‑M2/100‑1 (MQ=255)                                                                                                     atcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCCCTACGTTCATGTCGGTCTCCGCGCCAGCGTCTTCCGCGGCCTCCAGATCGCCACCCGCtt                                           >  2:242736‑M2/43‑143 (MQ=255)                                                                                                       cagtcgccttaaaagtcagtttgccagcgccgcctcctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCg                                         <  2:271266‑M2/103‑1 (MQ=255)                                                                                                          tcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCg                                      <  1:772917‑M2/106‑1 (MQ=255)                                                                                                            gccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGtt                                    <  1:390324‑M2/108‑1 (MQ=255)                                                                                                            gccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGGCATCACTACGTTCACGTCGGTCTCTGCGGCAGCGTCTTCAACGTATTCCAGAGCGCAAACCGCTTCGCCGtt                                    >  2:625834‑M2/36‑143 (MQ=255)                                                                                                            atcgtaaaacgcagttacccagcgccgcctcctgcCGACCCCCGCACTTCAATGAAGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGGCTCTGCGGCAGAAACTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGtt                                    <  2:952122‑M2/108‑1 (MQ=255)                                                                                                              cttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTca                                  >  1:888463‑M2/34‑143 (MQ=255)                                                                                                                 aaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTGAATGATGCGCCCGGCTTCGGTCATGACTACGTTCACGTCGGTCTCTGCGGCCGCGTCTTCAACGTATTGCCGATCGCGACCCGCTTCGCCgtgcagat                               >  1:952122‑M2/31‑140 (MQ=255)                                                                                                                 aaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGCCTTCAACGTATCCCACATCGCACACCGCTTCGCCGTCCACaa                               >  2:927974‑M2/31‑143 (MQ=255)                                                                                                                   aaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTAGCCGGTCACAGtt                             >  1:782247‑M2/29‑143 (MQ=255)                                                                                                                        agtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGAc                        <  2:678172‑M2/120‑1 (MQ=255)                                                                                                                                       ccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCTAc         <  2:366846‑M2/135‑1 (MQ=255)                                                                                                                                         ttctgcCGTCCCCGGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCTACCa       <  1:673085‑M2/137‑1 (MQ=255)                                                                                                                                           ctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCGTTGCGCAATTCCGCCCGAAACTGCGGCTACCCTc     >  1:293183‑M2/5‑143 (MQ=255)                                                                                                                                           ctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCTACCATc     >  2:157664‑M2/5‑143 (MQ=255)                                                                                                                                           ctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCTACCATc     >  1:1009049‑M2/5‑143 (MQ=255)                                                                                                                                             gcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCTACCATccc   <  2:1009058‑M2/141‑1 (MQ=255)                                                                                                                                              cCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCTACCATCCCt  <  1:1005573‑M2/142‑1 (MQ=255)                                                                                                                                               |                                                                                                                                              ACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCTACCATCCCT  >  NC_000913/3815799‑3816082

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑