| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3905650 | 98 (1.380) | 3 (0.050) | 3/252 | 10.0 | 3.2% | intergenic (‑53/+81) | bglF/bglG | fused beta‑glucoside‑specific PTS enzymes: IIA component/IIB component/IIC component/transcriptional antiterminator of the bgl operon |
| ? | NC_000913 | = 3905672 | 95 (1.490) | intergenic (‑75/+59) | bglF/bglG | fused beta‑glucoside‑specific PTS enzymes: IIA component/IIB component/IIC component/transcriptional antiterminator of the bgl operon | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
TCATCCTTTAATTTAAAACGTAATCGCGTTGCGCAATGCATCAGACTCACAATGTTATCTGCG‑CCCCCGACTCCTGCGACTATTTTTCTGGCTAACTCCGTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACTCCAAAAAAAAACCTGAAAAAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3905494‑3905650‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaacctgaaaaaaaTTGCTTGATTCACGTCAGGCCGTTTTTTTCAGG‑TTTTTTTTTGGAGTTTTGCCGCAAAGCGGTAGAGGGCAAGTTATGACGGAGTTAGCCAGAAAAATAGTCGCAGGAGTCGGGGGCGCAGATAACATTGTGAGTCTGAT < NC_000913/3905672‑3905533 TCATCCTTTATTTTAAAACGTAATCGCGTTGCGCAATGCATCAGACTCACAATGTTATCTGCG‑CCCCCGCCTCCTGCGACTATTTTTCTGGCTAACTCCGTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACTCCAAAAAA < 1:787167/143‑1 CCTTTAATTTAAAACGTAATCGCGTTGCGCAATGCATCAGACTCACAATGTTATCTGCG‑CCCGCGACTCCTGCGACTATTTTTCTGGCTAACTCCGTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACTCCAAAAAAAAAC < 1:648775/143‑1 CTTTAATTTAAAACGTAATCGCGTTGCGCAATGCATCAGCCTCACAATGTTATCTGCGCCCCCCGACTCCTGCGACTATTTTTCTGGCTAACTCCGTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACTCCAAAAAAAAAC < 1:603917/143‑1 CTTTAATTTAAAACGTAATCGCGTTGCGCAATGCATCAGACTCACAATGTTATCTGCG‑CCCCCGACTCCTGCCACTATTTTTCTGGCTAACTCCGTCATAACTTGCCCTCTACGCCTTTTCTGCCAAACTCCACAAAAAACCC > 2:949404/1‑143 TTAATTTAAAACGTAATCGCGTTGCGCAATGCATCAGACTCACAATGTTATCTGCG‑CCCCCGACTCCTGCGACTATTTTTCTGGCTAACTCCGTCATAACTTGCCCTCTCCCGCTTTGCGGCATAACTCCAAAAAAAAACCTG > 1:1075491/1‑143 TTAAAACGTAATCGCGTTGCGCAATGCATCAGACTCACAATGTTATCTGCG‑CCCCCGACTCCTGCGACTATTTTTCTGGCTAATTCCGTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACTCCAAAAAAAACCCTGAAAca > 2:632661/1‑141 TTAAAACGTAATCGCGTTGCGCAATGCATCAGACTCACAATGTTATCTGCG‑CCCCCGACTCCTGCGACTATTTTTCTGGCTAACTCCGTCATAACTCGCCCTCTACCGCTTTGCGGCCACACTCCAAAACAAACCCGCAAAAA > 2:694839/1‑143 CTGCG‑CCCCCGCCTCCTGCGACTATTTTTCGGGCTAACTCCGTCATACCTTGCCCTCTACCGCTTTGCGGCAAAACTCCAAAAAAAAACCTGAAAAAAATTGCTTGATTCACGTCAGGCCGTTTTTTTCAGG‑TTTTTTTTTGG < 1:632661/143‑1 TCCGTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACTCCAAAAAAAAACCTGAAAAAAATTGCTTGATTCACGTCAGGCCGTTTTTTTCAGG‑TTTTTTTT < 1:674605/102‑1 TCCGTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACTCCAAAAAAAAACCTGAAAAAAATTGCTTGATTCACGTCAGGCCGTTTTTTTCAGG‑TTTTTTTT > 2:674605/1‑102 AAACCTGAAAAAAATTGGTTGATGCGCGGCAGGCCGGTGTTTTCAGG‑TTTCTCTTAGGAGTTTTGCCGAAAAGCGGTAGAGGGCAAGTGATGACGGAGTTAGCCAGAAAAATAGTCGCAGGAGTCGGGGGCGCAGATAACATT < 2:269563/143‑1 AAACCTAAAAAAAATTGCTTGATTCACGTCAGGCCGTTTTTTTCAGG‑TTTTTTTTTGGAGTTTTGCCGCAAAGCGGTAGAGGGCAAGTTATGACGGAGTTAGCCAGAAAAATAGTCGCAGGAGTCGGGGGCGCAGATAACATT < 1:682937/143‑1 AACCTGAAAAGAATTGCTTGATCCACGTCAGGCCGTTTTTTTCAGG‑TTTTTTTTTGGAGTTTTGCCGCAAAGCGGTAGAGGGCAAGTTATGACGGAGTTAGCCAGAAAAATAGTCGCAGGAGTCGGGGGCGCAGATAACATTG < 1:987941/143‑1 aaCTGAACAAGATGGCGTGGTTCTCGTCAGGCCGTTTGTTTCAGG‑CTTTTTGTTGGAGTTTAGCCGCAACGCGGTAGAGGGCCAGTTATGACGGAGTTAGCAAGAAAAATAGTCGCAGGAGTCGGGGGCGCAGATAACATTGT < 1:925152/141‑1 ACCTGAAAAAAATGGTGTGATACACGTCAGGCCGTTTTTTTCAGG‑TTTTTTTTTGGAGTTTTGCCGCAAAGCGGTAGAGGGCAAGTTATGACGGAGTTAGCCAGAAAAATAGTCGCAGGAGTCGGGGGCGCAGATAACATTGT < 1:33649/143‑1 ctTGAAAAAAATTGCTTGATGCACGTCGGGCGGGGTTGGGCAGGTTTTTTTTTTGGAGTTTTGCCGCAAAGCGGTAGAGGGCAAGTTATGGCGGAGTTAGCCAGAAAAATAGTCGCAGGAGTCGGGGGCGCAGATAACATTGT < 1:1060058/141‑1 GAAAAAACTTGGCTGGCTCACGTCGGGCCGTGTTTTTGAGG‑TTTTTTTTTGGATTGTTGCCGCTAAGCCGTTGAGGTCAAGTTATGACGGAGTTAGCCAGAAAAATAGTCGCAGGAGTCGGGGGCGCAGATAACATTGTGAGT < 2:1047175/143‑1 AAAAAAATTGCTTGATTCACGTCAGGCCGTTTTTTTCAGG‑TTTTTTTTTGGAGTTTTGCCGCAAAGCGGTAGAGGGCAAGTTATGACGGAGTTAGCCAGAAAAATAGTCGCAGGAGTCGGGGGCGCAGATAACATTGTGAGTC < 2:295029/143‑1 AAAAAAATTGCTTGATTCACGTCAGGCCGGTTTTTTCAGG‑TTTTTTTTTGGAGTTTTGCCGCAAAGCGGTAGAGGGCAAGTTATGACGGAGTTAGCCAGAAAAATAGTCGCAGGAGTCGGGGGCGCAGATAACATTGTGAGTC < 1:1265504/143‑1 AAATTGCTAGATTCACGTCAGGCCGTTTTTTTCAGG‑TTTTTTTTTGGAGTTTTGCCGCAAAGCGGTAGAGGGCAAGTTATGACGGAGTTAGCCAGAAAAATAGTCGCAGGAGTCGGGGGCGCAGATAACATTGTGAGTCTGAT < 1:464285/143‑1 TCATCCTTTAATTTAAAACGTAATCGCGTTGCGCAATGCATCAGACTCACAATGTTATCTGCG‑CCCCCGACTCCTGCGACTATTTTTCTGGCTAACTCCGTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACTCCAAAAAAAAACCTGAAAAAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3905494‑3905650‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaacctgaaaaaaaTTGCTTGATTCACGTCAGGCCGTTTTTTTCAGG‑TTTTTTTTTGGAGTTTTGCCGCAAAGCGGTAGAGGGCAAGTTATGACGGAGTTAGCCAGAAAAATAGTCGCAGGAGTCGGGGGCGCAGATAACATTGTGAGTCTGAT < NC_000913/3905672‑3905533 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |