Predicted mutation
evidence seq id position mutation annotation gene description
JC JC NC_000913 1,293,032 IS1 (–) +8 bp intergenic (‑110/‑488) hns ← / → tdk global DNA‑binding transcriptional dual regulator H‑NS/thymidine kinase/deoxyuridine kinase

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 257908 =NA (NA)52 (0.800) 48/284 0.3 100% noncoding (768/768 nt) IS1 repeat region
?NC_000913 = 1293039 0 (0.000)intergenic (‑117/‑488) hns/tdk global DNA‑binding transcriptional dual regulator H‑NS/thymidine kinase/deoxyuridine kinase
* ? NC_000913 1293032 =0 (0.000)65 (1.000) 52/284 0.2 100% intergenic (‑110/‑495) hns/tdk global DNA‑binding transcriptional dual regulator H‑NS/thymidine kinase/deoxyuridine kinase
?NC_000913 = 1979270 NA (NA)noncoding (1/768 nt) IS1 repeat region

Only 100 of 121 total aligned reads displayed.

GATGTTGTTCAGAATTTTAAGTGCTTCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATGGGGAGATTATCGTAGGCT  >  NC_000913/1292890‑1293173
                                                                                                                                              |                                                                                                                                             
gATGTTGTTCAGAATTTTAAGTGCTTCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGCTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTAttt                                                                                                                                               <  2:636491/143‑1 (MQ=255)
  gctgatgtccggcggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcacctcc                                                                                                                                             <  1:417046‑M1/3‑3 (MQ=255)
    ttgttCAGAATTTTAAGTGCTTCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTtgtg                                                                                                                                           <  1:513780/143‑1 (MQ=255)
     tgttCAGAATTTTAAGTGCTTCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTAAGTTGTGCAATAGCAAGGAATGTAAGGAATTAAAAATTGTTCTTTATTTTGTgc                                                                                                                                          >  1:324777/1‑143 (MQ=255)
      gttCAGAATTTTAAGTGCTTCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGCGGATCAGCCGGGAATGTACGGATTTAAAAATTGTTCTTTATTTAGTgcc                                                                                                                                         >  2:698925/1‑143 (MQ=255)
      atgtccggcggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagatggcagcatcaccTTGTgcc                                                                                                                                         <  2:1156110‑M1/7‑1 (MQ=255)
       ttCAGAATTTTAAGTGCTTCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTgccg                                                                                                                                        >  1:684670/1‑143 (MQ=255)
        gtccggcggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTgccgc                                                                                                                                       <  1:656412‑M1/9‑1 (MQ=255)
        gcccggcggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggaggtcctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTgccgc                                                                                                                                       >  2:196294‑M1/135‑143 (MQ=255)
        gcccggcggtgcacttgccgctacgcacccccccgtcagtagccgaacaggagggacagctgatcgaaaccgaagtcactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTgccgc                                                                                                                                       >  2:77874‑M1/135‑143 (MQ=255)
         tccggcggtgctttggccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTgccgcc                                                                                                                                      >  2:626339‑M1/134‑143 (MQ=255)
         cAGAATTTTAAGTGCTTCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGgg                                                                                                                                      <  1:352782‑M2/143‑3 (MQ=255)
          aGAATTTTAAGTGCTTCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTAGTTTGTGCCGggt                                                                                                                                     <  1:30038‑M2/143‑4 (MQ=255)
            aaTTTTAAGTGCTTCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAGATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaa                                                                                                                                   <  1:439203‑M2/143‑6 (MQ=255)
             aTTTTAAGTGCTTCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaat                                                                                                                                  <  1:585133‑M2/143‑7 (MQ=255)
              cggtgctttcgccgtgacgcaccaccccgccagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagatggcagcatcaccTTGTGCCGCCaataa                                                                                                                                 >  2:948957‑M1/129‑143 (MQ=255)
              cggggcttttgccgttacgcaccaccccggcagtagctgaacaggagggccagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCaataa                                                                                                                                 >  1:412143‑M1/129‑143 (MQ=255)
                tttAGTGTGTCGGTCATTGTCGTAATCTCAAACTTATATTGGGGTGGTTTGTGGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAAGGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgac                                                                                                                               >  2:466240‑M2/1‑134 (MQ=255)
                  gcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcagcaccTTGTGCCGCcaataaatac                                                                                                                             <  2:328472‑M1/19‑2 (MQ=255)
                   cttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcgcctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGACAAGAAGTATc                                                                                                                            <  1:265710‑M1/20‑1 (MQ=255)
                     tGCTTCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTGGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaa                                                                                                                          <  2:172660‑M2/143‑15 (MQ=255)
                      gCTTCGCTCATTGTAGTAATCTCAAACTTATATGGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaac                                                                                                                         >  1:140885‑M2/1‑128 (MQ=255)
                         tCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATCCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaactta                                                                                                                      >  1:647051‑M2/1‑125 (MQ=255)
                          cgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATACATATCTTTTcag                                                                                                                     <  1:94373‑M1/27‑2 (MQ=255)
                           gCTCATGGTAGTAATCTCAAACTTATATTGGGGTGGTTGGTTGATGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttatt                                                                                                                    >  2:1050097‑M2/1‑123 (MQ=255)
                            cTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTATATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAAGTGTTCTTTATTTTGTGCCGggtaatgactccaacttattg                                                                                                                   >  1:781959‑M2/1‑122 (MQ=255)
                                  accaccacctcagtagctgaacagcagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAg                                                                                                             >  2:450678‑M1/109‑143 (MQ=255)
                                   tagtaATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTCACGtgtaatgactcccacttatcgacagtga                                                                                                            <  2:41386‑M2/143‑29 (MQ=255)
                                   ccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGc                                                                                                            >  1:969065‑M1/108‑143 (MQ=255)
                                    caccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactgcagcacctcaaaaaccacaccacacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATACAattaccc                                                                                                           <  2:415688‑M1/37‑4 (MQ=255)
                                      taATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgtttt                                                                                                         >  1:529044‑M2/1‑112 (MQ=255)
                                      ccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATACATATCTTTTCATAAAATTAGCCAg                                                                                                         <  1:96364‑M1/39‑1 (MQ=255)
                                             aaaCTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttatggatggtgttttatgttca                                                                                                  <  1:361779‑M2/143‑39 (MQ=255)
                                              aaCTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCACGTTTTTGATCAATTCAACATTTTGCTTGATGTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcag                                                                                                 >  1:861827‑M2/1‑104 (MQ=255)
                                                 ttATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagata                                                                                              <  1:437682‑M2/143‑43 (MQ=255)
                                                 ttATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagata                                                                                              <  1:122494‑M2/143‑43 (MQ=255)
                                                   atctTGGGGTGGTTTGTTGAGATAATAATAGAGCCTTAAATTCAGCTGTGCAATAGCCAGGAATGTAAGGAATTCAACATTGTTCTTTATTTTGTGCCGggtcatgactccatcttattgatagtgttttatgttcagataat                                                                                            >  1:868884‑M2/1‑99 (MQ=255)
                                                    gaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCat                                                                                           <  1:565895‑M1/53‑1 (MQ=255)
                                                      acaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCatat                                                                                         <  1:203132‑M1/55‑1 (MQ=255)
                                                       caggagggacagctgatagaaacagaagccactggaacacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCAtata                                                                                        <  1:761510‑M1/56‑1 (MQ=255)
                                                        ggggTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccg                                                                                       >  2:455662‑M2/1‑94 (MQ=255)
                                                             ggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGCCGCGGCATATAGCCCTa                                                                                  <  2:712500‑M1/62‑1 (MQ=255)
                                                              gtTGGTGGAGGGAATAATAGCGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgact                                                                                 >  1:1141036‑M2/1‑88 (MQ=255)
                                                                ttgttgAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgacttt                                                                               >  1:936397‑M2/1‑86 (MQ=255)
                                                                   ttgGGGTAATAATAGATCGTTAGATTCAGTTGTGCAATGGCCAGGAATGTAAGGAATTCAGAATTGTTCTTTATTTTGTGCCGtgtaatgactccaacttatggatagtgttttatgttcagataatgcccgatgactttgtc                                                                            >  2:1088086‑M2/1‑83 (MQ=255)
                                                                   ttgAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactctgtc                                                                            <  1:294779‑M2/143‑61 (MQ=255)
                                                                   ctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTaca                                                                            <  1:916203‑M1/68‑1 (MQ=255)
                                                                    tgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTacac                                                                           <  1:177298‑M1/69‑1 (MQ=255)
                                                                    tgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTacac                                                                           >  1:277428‑M1/75‑143 (MQ=255)
                                                                     gAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcat                                                                          <  1:975417‑M2/143‑63 (MQ=255)
                                                                       tagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGATGCGGCATATAGCCCTATTTACACCga                                                                        >  1:1025658‑M1/72‑143 (MQ=255)
                                                                       tagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCga                                                                        <  1:623672‑M1/72‑1 (MQ=255)
                                                                        agaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCgat                                                                       <  1:1060238‑M1/73‑1 (MQ=255)
                                                                          aaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCgatga                                                                     <  1:748026‑M1/75‑1 (MQ=255)
                                                                           aacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCgatgat                                                                    <  1:539428‑M1/76‑1 (MQ=255)
                                                                              ataGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctcca                                                                 <  1:984923‑M2/143‑72 (MQ=255)
                                                                               taGAGTCTTAAATTCAGTTGTGCACTAGACAGGAATGTAAGGAATTCAAAATTGTTCTTTATTATGTGCCGtgcaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccac                                                                >  2:77957‑M2/1‑71 (MQ=255)
                                                                                 tgccactgcaacaccccaactgcaccatcataccctaaagtagtaagttggcatcatcaccTTGTGCCGCCAATAAATCTCGTTTCATAAAATTAGCCAGAAAAGTCGCGGCATATAGCCCTATTTACACCGATGATTTCgca                                                              >  2:530376‑M1/62‑143 (MQ=255)
                                                                                   ccactggagcacctcaaaaacaccatcatacactaaatcagtaaggtggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCgcagc                                                            >  1:379604‑M1/60‑143 (MQ=255)
                                                                                    ccTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgatt                                                           <  1:1143860‑M2/143‑78 (MQ=255)
                                                                                      ttAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgatttt                                                         <  1:1125169‑M2/143‑80 (MQ=255)
                                                                                       tggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGt                                                        <  2:426277‑M1/88‑1 (MQ=255)
                                                                                         gagcacctcaaaaacaccatcatacactaaatcagtaagttggaagcatcacaTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGAATATAGCCATATTTACACAGATGATTACGCAGCACGTGa                                                      <  2:958974‑M1/90‑1 (MQ=255)
                                                                                          agcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGGTTTCGCAgcacgaacg                                                     <  2:567150‑M1/91‑5 (MQ=255)
                                                                                            tCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaccttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaac                                                   >  2:851756‑M2/1‑58 (MQ=255)
                                                                                              tgtcggtcactagccAGGACGGTCAGGAATTTTAAATTGTTCTTTATTGTGTGCCGggtaatgactccaccttattgatagggttttatgttcagataatgcccgatgactttgtcatgcagctcccccgattttgagaacga                                                 >  2:62202‑M2/8‑56 (MQ=255)
                                                                                               ctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTaa                                                <  2:142848‑M1/96‑1 (MQ=255)
                                                                                               ctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGCTaa                                                <  2:601871‑M1/96‑1 (MQ=255)
                                                                                               ctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGACTTCGCAGCACGTGAcgttca                                                <  2:331259‑M1/96‑3 (MQ=255)
                                                                                                ttGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgaca                                               <  1:543493‑M2/143‑90 (MQ=255)
                                                                                                tcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCTAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTaaa                                               <  1:1059767‑M1/97‑1 (MQ=255)
                                                                                                 tgtgCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgataatgttttatgtccggataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacag                                              >  1:220277‑M2/1‑53 (MQ=255)
                                                                                                  aaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACTCATGATTTCGCAGCACGTGAGGTTAAAAc                                             <  2:1160711‑M1/99‑1 (MQ=255)
                                                                                                  aaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAAc                                             <  1:793026‑M1/99‑1 (MQ=255)
                                                                                                   tgCGATAGCCAGGGATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttacgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcg                                            >  2:371153‑M2/1‑51 (MQ=255)
                                                                                                     aacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTc                                          >  1:383463‑M1/42‑143 (MQ=255)
                                                                                                      aaTAGCCAGAAAGGTAAGGAATGCAAAATTGTTCTTTATTTTGTGCCGgggaatgactacaacatatcgataatgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattgggaacacgccagcgacc                                         <  2:658733‑M2/143‑96 (MQ=255)
                                                                                                        accatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAACAAGGGAGGTGAAAACTTCctc                                       <  2:147681‑M1/105‑2 (MQ=255)
                                                                                                          catcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTCGCCAGAAAAGACGCGGCATATAGCCCTCTTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGAt                                     <  2:295992‑M1/107‑1 (MQ=255)
                                                                                                            cAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgatttggagcacgacagcgacttccgtc                                   <  1:928155‑M2/143‑102 (MQ=255)
                                                                                                              atacacttaatcagtaagtcggcagcatccccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAACGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCAt                                 >  1:890352‑M1/33‑143 (MQ=255)
                                                                                                                acactaaatcaggaagttgcaagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGt                               >  1:890839‑M1/31‑143 (MQ=255)
                                                                                                                  tGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcctgcagctccaccgattttgaacacgacagcgactcacgtcccagcc                             <  2:963794‑M2/143‑108 (MQ=255)
                                                                                                                  tGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagcc                             >  1:758472‑M2/1‑36 (MQ=255)
                                                                                                                    tAATGTATTCAATTTTGTTCTTTATTTTTTGCCTggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgt                           >  1:235644‑M2/1‑34 (MQ=255)
                                                                                                                       ggAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgatcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgcc                        <  2:571125‑M2/143‑113 (MQ=255)
                                                                                                                         aaTGCAAAAGTGTTCTTGAGTTTGAGCCGggtaatgactccaacgtattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccag                      >  2:837536‑M2/1‑29 (MQ=255)
                                                                                                                           gtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATg                    <  1:1037400‑M1/124‑1 (MQ=255)
                                                                                                                              agttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATgggg                 >  2:912359‑M1/17‑143 (MQ=255)
                                                                                                                                ttggcgtcatcaccTTGTGCTGCCAATAAATATCGTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATGGGgag               >  2:688233‑M1/15‑143 (MQ=255)
                                                                                                                                   gcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATggggagctg            <  2:595337‑M1/132‑4 (MQ=255)
                                                                                                                                      tCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcaga         <  1:1174869‑M2/143‑128 (MQ=255)
                                                                                                                                       cTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgccagatgactttgtcatgcagctccaccgattttgaaaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagat        <  2:67736‑M2/143‑129 (MQ=255)
                                                                                                                                        tttATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtccccgccgtgccaggtgctgcctcaggtt       <  2:1148941‑M2/143‑130 (MQ=255)
                                                                                                                                        atcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATGGGGAGATTATCGt       <  2:227735‑M1/137‑1 (MQ=255)
                                                                                                                                        atcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATGGGGAGATTATCGt       <  2:819173‑M1/137‑1 (MQ=255)
                                                                                                                                          tATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagattca     >  1:734652‑M2/1‑12 (MQ=255)
                                                                                                                                          caccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATGCATGTCACATTTTATGGGGTGATTATCGTAg     <  1:138786‑M1/139‑1 (MQ=255)
                                                                                                                                            ccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGAGGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATGGGGAGATTATCGTAGGc   >  1:755193‑M1/3‑143 (MQ=255)
                                                                                                                                             tttGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgccgcggattcaggt  <  1:1023358‑M2/143‑135 (MQ=255)
                                                                                                                                              |                                                                                                                                             
GATGTTGTTCAGAATTTTAAGTGCTTCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATGGGGAGATTATCGTAGGCT  >  NC_000913/1292890‑1293173

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.