New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 381442737 (0.920)9 (0.240) 3/268 5.8 20.0% intergenic (+40/‑67) dut/slmA deoxyuridinetriphosphatase/nucleoid occlusion factor, anti‑FtsZ division inhibitor
?NC_000913 = 3814432 37 (0.980)intergenic (+45/‑62) dut/slmA deoxyuridinetriphosphatase/nucleoid occlusion factor, anti‑FtsZ division inhibitor
Rejected: Coverage evenness skew score above cutoff.

TGATTTTTGTTCCGGTAGTACAGGCTGAATTTAATCTGGTGGAAGATTTCGACGCCACCGACCGCGGTGAAGGCGGCTTTGGTCACTCTGGTCGTCAGTAACACATACGCATCCGAATAACGTCATAACATAGCCGCAAACATTTCGTTTGCGGTCATAGCGTGGGTGCCGCCTGGCAAGTGCTTATTTTCAGGGGTATTTTGTAACATGGCAGAAAAACAAACTGCGAAAAGGAACCGTCGCGAGGAAATACTTCAGTCTCTGGCGCTGATGCTGGAA  >  NC_000913/3814287‑3814565
                                                                                                                                            |                                                                                                                                          
tgagTTTTGTTCGGGTAGTACAGGCTGAAGTGAATCTGGTGGAAGCTTTCGACGCCACCGACCGCGGTGAAGGCGGCTTTGGTCACTCTGGTCGTCAGTAACACATACGCATCCGAATAACGTCATAACATAGCCGCAAACAt                                                                                                                                          <  2:631865/143‑1 (MQ=255)
     tttGTTCCGGTAGTACAGGCTGAATGTCATCTGGTGGAAGATTTCGACGCCACCGACCGCGGTGAAGGCGGCTTTGGTCACTCTGGTCGTCAGTAACACATACGCATCCGAATAACGTCATAACATAGCCGCAAACATTTCGt                                                                                                                                     <  1:221950/143‑1 (MQ=255)
                     aGGCTGAGTGTAATCTGGTGGAAGATTTCGACGCCACCGACCGCGGTGAAGGCGGCTTTGGTCACTCTGGTCGTCAGTAACACATACGCATCCGAATAGCGTCATAACATAGCCGCAAACATTTCGTTTGCGGTCATAGCGTg                                                                                                                     <  2:536156/143‑1 (MQ=255)
                         tGAATTTAATCTGGTGGAAGATTTCGACGCCACCGACCGCGGTGAAGGCGGCGTTGGTCACTCTGGTCGTCAGTAACACATACGCATCCGAATAACGTCATAACATAGCCGCAAACATTTCGTTTGCGGTCATAGCGTggggg                                                                                                                 >  2:547449/1‑141 (MQ=255)
                           gaTTTCATCTCGTGGAAGGTTTCGACGTCACCGTCCGTGGTGCAGGCTGCTTTTGTCACTCTGGTCGTCAGTAACACATACGCATCCGAATAACGTCATAACATAGCCGCAAACATTTCGTTTGCGGTCATAGCGTGGGTgcc                                                                                                               <  2:229367/142‑1 (MQ=255)
                             tttCATCTGGTGGATGATTCCGACGCCCCCGACCGCGGGGAAGGCGGCTTTGGTCACTCTGGTCGTCAGTAACACATACGCATCCGAATAACGTCATAACATAGCCGCAAACATTTCGTTTGCGGTCATAGCGTGGGTgccgc                                                                                                             <  2:580901/143‑1 (MQ=255)
                                  tCTGGTGGAAGATTTCGACGCCACCGACCGCGGTGAAGGCGGCTTTGGTCACTCTGGTCGTCAGTAACACCTACGCATCCGAATAACGTCATGCCATAGCCGCAAACATATCGTTTGCGGTCATAGCGGGGGTGCCGCCGGGc                                                                                                        >  1:437623/1‑143 (MQ=255)
                                    tggcggAAGATTTCGACGCCACCGACCGCGGTGAAGGCGGCTTTGGTCACTCTGGCCGCCAGTAACACATACGCATCCGAATAACGTCATAACATAGCCGCAAACAGTCCGCTTGCGGTCATACCGTGGGTGCCCCCTgccca                                                                                                      >  2:294230/1‑139 (MQ=255)
                                           aGATTTCGACGCCACCGACCGCGGTGAAGGCGGCTTTGGTCACTCTGGTCGTCAGTAACACATACGCATCCGAATAACGTCATAACATAGCCGCAAACATTTCGTTTGCGGTCATAGCGTGGGTGCCGCCTGGCAAGTGCTTa                                                                                               >  1:297584/1‑143 (MQ=255)
                                              tttCGACGCCACCGCCCGCGGTGAAGGCGGCTTTGGTCACTCTGGTCGTCAGTAACACATACGCATCCGAATAACGTCATAACATAGCCGCAAACATTTCGTTTGCGGTCATAGCGTGGGTGCCGCCTGGCAAGTGCTTAttt                                                                                            <  1:538849/143‑1 (MQ=255)
                                                  gACGCCACCGTCCGCGGTGAAGGCGGCTTTGGTCACTCTGGTCGTCAGTAACACATACGCATCCGAATCACGTCAGAAGAGAGCCGCAAAGATTTCGTTTGCGGTGATAGCGTGGGTGCCGCCTGGCAAGTGCTTATTTTCAg                                                                                        <  2:274489/143‑1 (MQ=255)
                                                   aCGCCACCGACCGCGGTGAAGGCCGCTTTGGTCACTCTGGTCGTCAGTAACACATACGCATCCGAATAACGTCATACCATAGCCGCAAACATTTCGTTTGCGGTCATAGCGTGGGTGCCGCCTGGCAAGTGCTTATTTTCAgg                                                                                       <  1:203130/143‑1 (MQ=255)
                                                       cACCGACCGCGGTGAAGGCGGCTTTGGTCACTATGGTCGTCAGTAACAGATACGCATCCGAATAACGTCATAACATAGCCGGAAACATTTCGTTAACGGTGATAGCGTGGGGGCCGCCTGCCAAGTGCTTATTTTCAgggggc                                                                                   >  2:283401/1‑141 (MQ=255)
                                                           gcccgCGGTGAAGCCGGCTTTGGTCCCTCCGGTCGTCAGTAACACACACGCATCCGAATAACGTCATAACATAGCCGCAAACATTTCGTTTGCGGTCATAGCGTGGGTGCCGCCTGGCAAGTGCTTATTTTCAGGGGTAtttt                                                                               <  1:180576/141‑1 (MQ=255)
                                                                     aaGGCGGCTTTGGTCACTCTGGTCGTCAGTAACACATACGCATCCGAATAACGTCATAACATAGCCGCAAACATTTCGTTTGCGGTCATAGCGTGGGTGCCGCCGGGCAAGGGCTTATTTTCAGGGGTATTTTGTAACATGGc                                                                     >  1:24914/1‑143 (MQ=255)
                                                                            cTTTGGTCACTCTGGTCGTCAGTAACACATACGCATCCGAATAACGTCATAACATAGCCGCAAACATTTCGTTTGCGGTCATAGCGTGGGTGCCGCCTGGCAAGTGCTTATTTTCAGGGGTATTTTGTAACATGGCAGaaaaa                                                              >  1:7638/1‑143 (MQ=255)
                                                                             tttGGTCACTCTGGTCGCCAGTAACACATACGCATCCGAATAACGTCATAACATAGCCGCAAACATTTCGTTTGCGGTCATAGCGTGGGTGCCGCCTGGCAAGTGCTTATTTTCAGGGGTATTTTGTAACATGGCAGAAaaac                                                             >  2:205848/1‑143 (MQ=255)
                                                                                 gTCACTCTGGTCGTCAGTAACACATACGCATCCGAATAACGTCATAACATAGCCGCAAACATTTCGTTTGCGGTCATAGCGTGGGTGCCGCCTGGCAAGTGCTTATTTTCAGGGGTATTTTGTAACATGGCAGAAaaacaaac                                                         >  1:347166/1‑143 (MQ=255)
                                                                                  tCACTCTGGTCGTCAGTAACACATACGCATCCGAATAACGTCATAACATAGCCGCAAACATTTCGTTTGCGGTCATAGCGTGGGTGCCGCCTGGCAAGTGCTTATTTTCAGGGGTATTTTGTAACATGGCAGTAAAACAGACt                                                        >  1:4393/1‑143 (MQ=255)
                                                                                    aCTCTGGTCGTCAGTAACACATACGCATCCGAATAACGTCATAACATAGCCGCAAACATTTCGTGTGCGGTCATAGCGTGGGTGCCGCCTGGCAAGTGCTTATTTTCAGGGGTATTTTGTAACATGGCAGAAAAACAAACTGc                                                      <  1:416260/143‑1 (MQ=255)
                                                                                     ctctGGTCGTCAGTAACACATACGCATCCGAATAACGTCATAACATAGCCGCAAACATTTCGTTTGCGGTCATAGCGTgg                                                                                                                    >  2:494295/1‑80 (MQ=255)
                                                                                     ctctGGTCGTCAGTAACACATACGCATCCGAATAACGTCATAACATAGCCGCAAACATTTCGTTTGCGGTCATAGCGTgg                                                                                                                    <  1:494295/80‑1 (MQ=255)
                                                                                      tctGGTCGTCAGTAACACATACGCATCCGAATAACGTCATAACATAGCCGCAAACATTTCGTTTGCGGTCATAGCGTGGGTGCCGCCTGGCAAGTGCTTATTTTCAGGGGTATTTTGTAACATGGCAGAAAAACAAACTGCGa                                                    >  2:196940/1‑143 (MQ=255)
                                                                                      tctGGTCGTCAGTAACACATACGCATCCGAATAACGTCATAACATAGACGCAAACATTTCATTTGCACTCATAGCGTGGGTGCCGCCTGGCAAGTGCGTATATTGCGGGCTATTTTGTAACATGGCAGAAAAACGAACTGCGa                                                    >  2:524109/1‑143 (MQ=255)
                                                                                        tGGTCGTCAGTAACACATACGCATCCGAATAACGTCATAACATAGCCGCAAACATTTCGTTTGCGGTCATAGCGTGGGTGCCGACTGGCAAGTGCGTATTGTCAGGGGTAGTTTGTAACCTGGCAGAAAAGCAAACTGCGaaa                                                  >  1:233454/1‑143 (MQ=255)
                                                                                           tcgtcAGTAACACATACGCATCCGAATAACGTCATAACATAGCCGCAAACATTTCGTTTGCGGTCATAGCGTGGGTGCCGCCTGGCAAGTGCTTATTTTCAGGGGTATTTTGTAACATGGCAGAAAACCAAACTGCGAAAAgg                                               >  1:466817/1‑143 (MQ=255)
                                                                                                  tAACACATACGCATCCGAATAACGTCATAACATAGCCGCAAACTTGTCGTTTGCGGTCATAGCGTGGGTGCCGCCTGGCAAGTGCTTATTTTCAGGGGTATTTTGTAAGATGGCAGAAACACAAACTGCGAAAAGGAACCGTc                                        >  2:325258/1‑143 (MQ=255)
                                                                                                      acaTACGCTTCCGAATAACGTCATAACATAGCCGCAACCATTTCGTTTGCGGTCATAGCGTGGGTGCCGCCTGGCAAGTGCTTATTTTCAGGGGTATTTTGTAACATGGCAGAAAAACAAACTGCGAAAAGGAACCGTCGCGa                                    <  2:346813/143‑1 (MQ=255)
                                                                                                               tCCGAATAACGTCATAACATAGCCGCAAACATTTCGTTTGCGGTCATAGCGTGGGTGCCGCCTGGCAAGTGCTTATTTTCAGGGGTATTTTGTAACATGGCAGAAAAACAAACTGCGAAAAGGAACCGTCGCGAGGAAATACt                           >  1:659668/1‑143 (MQ=255)
                                                                                                               tCCGAATAACGTCATAACATAGCCGCAAACATTTCGTTTGCGGTCATAGCGTGGGTGCCGCCTGGCAAGTGCTTATTTTCAGGGGTATTTTGTAACATGGCAGAAAAACAAACTGCGAAAAGGAACCGTCGCGAGGAAATACt                           >  1:622342/1‑143 (MQ=255)
                                                                                                                ccGAATAACGTCATAACATAGCCGCAAACATTTCGTTTGCGGTCATAGCGTGGGTGCCGCCTGGCAAGTGCTTATTTTCAGGGGTATTTTGTAACATGGCAGAAAAACAAACTGCGAAAAGGAACCGTCGCGAGGAAATACtt                          <  1:196940/143‑1 (MQ=255)
                                                                                                                ccGAATAACGTCATAACATAGCCGCAAACATTTCGTTTGCGGTCATAGCGTGGGTGCCGCCTGGCAAGTGCTTATTTTCAGGGGTATTTTGTAACATGGCAGAAAAACAAACTGCGAAAAGGAACCGTCGCGAGGAAATACtt                          >  2:483845/1‑143 (MQ=255)
                                                                                                                          tCATAACATAGCCGCAAACATTTCGTTTGCGGTCATAGCGTGGGTGCCGCCTGGCAAGTGCTTATTTTCAGGGGTATTTTGTCACATGGCAGAAAAACAAACTGCGAAAAGGAACCGTCGCGACGAACTACCTCACtctcgcg                >  2:482177/1‑140 (MQ=255)
                                                                                                                                     ccGCAAACATTTCGTTTGCGGTCATAGCGTGGGTGCCGCCTGGCAAGTGCTTATTTTCAGGGGTATTTTGTAACATGGCAGAAAAACAAACTGCGAAAAGGAACCGTCGCGAGGAGATACTTCAGTCTCTGGCGCTGATGCTg     >  1:81610/1‑143 (MQ=255)
                                                                                                                                     ccGCAAACATTTCGTTTGCGGTCATAGCGTGGGTGCCGCCTGGCAAGTGCTTATTTTCAGGGGTATTTTGTAACATGGCAGAAAAACAAACTGCGAAAAGGAACCGTCGCGAGGAAATACTTCAGTCTCTGGCGCTGATGCTg     >  2:93723/1‑143 (MQ=255)
                                                                                                                                     ccGCAAACATTTCGTTTGCGGTCATAGCGTGGGTGCCGCCTGGCAAGTGCTTATTTTCAGAGGTAATGTGGAACATGGCAGAAAAACAAACTGCGAAAAGGAACCGTCGCGAGGAAATACTTCAGTCTCTGGCGCTGATGcgg     >  1:272986/1‑141 (MQ=255)
                                                                                                                                        cAAACATTTCGTTTGCGGTCATAGCGTGGGTGCCGCCTGGCAAGTGATTATTTTCAGGGGTATGGTGTAAGGTGGCAGAAAAACAAGCTGCGAAAAGGAACCGTCGCGGGGGAATGCTTCAGTCTCTGGCGCTGATGCTGGac  >  1:594849/1‑142 (MQ=255)
                                                                                                                                            |                                                                                                                                          
TGATTTTTGTTCCGGTAGTACAGGCTGAATTTAATCTGGTGGAAGATTTCGACGCCACCGACCGCGGTGAAGGCGGCTTTGGTCACTCTGGTCGTCAGTAACACATACGCATCCGAATAACGTCATAACATAGCCGCAAACATTTCGTTTGCGGTCATAGCGTGGGTGCCGCCTGGCAAGTGCTTATTTTCAGGGGTATTTTGTAACATGGCAGAAAAACAAACTGCGAAAAGGAACCGTCGCGAGGAAATACTTCAGTCTCTGGCGCTGATGCTGGAA  >  NC_000913/3814287‑3814565

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.