| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1207790 = | 7 (0.170) | 28 (0.790) | 26/252 | 0.4 | 87.2% | coding (290/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | 1209619 = | 2 (0.060) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
GTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATA‑ACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTGTGCAG > NC_000913/1209477‑1209760 | gcagatgcttttgcggcattccacccccactgaatgattactgattgctaaatacatctaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaac > 1:613230‑M2/143‑143 (MQ=255) gcttttgcggcattccactcccattgaatgattactgattgctcaatatcaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTAt < 2:38994‑M2/7‑1 (MQ=255) gcggcattccacccccactgaatgattactgattgctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcatttagttttgctccttctcccaaaccaaCGTTTATGAAAAt < 1:534489‑M2/13‑1 (MQ=255) ctgaatgattactgattgctcaataccaccaatcataaccggtatagccctacggtcgaatccgcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATA‑ACAAGCaa < 1:530264‑M2/30‑1 (MQ=255) tgaatgattactgattgctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgccttgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATA‑ACAAGCaaa > 2:492731‑M2/113‑143 (MQ=255) aatgattactgattgctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATA‑ACAAGCAAATg > 2:461303‑M2/111‑143 (MQ=255) ttgattactgattgcgcaataccacgaatcataaccgatatagctatgaaacctttgcttcctaatgtatccgttgattcattaaattttactccttctcccaaaccaaCGTTTATGAAAATGAAGAAATA‑ACAAGCAAATgg < 2:643775‑M2/34‑1 (MQ=255) aataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATA‑ACAAGCAAATGGCATCATTCCTGCTTTTa > 1:708879‑M2/93‑143 (MQ=255) caatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaacgaaCGTTTATGAAAATGAAGAAATC‑ACAAGCAACTGGCATCATTCCTGCTTATACCCggggg > 2:102806‑M2/85‑143 (MQ=255) taaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATA‑ACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTaa > 2:675549‑M2/79‑143 (MQ=255) taaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATA‑ACAAGCAAATGGCATAATTCCTGCTGTTACAAGGgggatctca > 1:76334‑M2/79‑139 (MQ=255) cggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAGTA‑ACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATg < 1:412167‑M2/69‑1 (MQ=255) gtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATG‑GGAAATATACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCt > 1:529955‑M2/73‑143 (MQ=255) tatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATA‑ACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCtt > 1:174649‑M2/72‑143 (MQ=255) tGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATA‑ACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTAtt < 1:299948/143‑1 (MQ=255) ctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATA‑ACCAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTgg > 1:632767‑M2/67‑143 (MQ=255) atgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATA‑ACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCt < 1:542567‑M2/79‑1 (MQ=255) gaaaccggtgcttcctaatgtcgccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATA‑ACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTCGCTAt < 2:604316‑M2/81‑1 (MQ=255) aaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATA‑ACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGt > 1:77364‑M2/61‑143 (MQ=255) cctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATA‑ACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTCTGTACGCGTATcaa > 1:275428‑M2/50‑143 (MQ=255) ctaacggagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATA‑ACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATcaac < 1:635092‑M2/95‑1 (MQ=255) atgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATA‑ACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACaaa < 1:688389‑M2/98‑1 (MQ=255) cagcagttgctgcattgagttttgttgcttcgcccaaaccaaCGTTTATGAAAATGAAGAAATA‑ACAAGCAAAGGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGa < 2:449222‑M2/101‑1 (MQ=255) agccgttgcggcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGCAGAAATA‑ACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGAc < 1:609834‑M2/102‑1 (MQ=255) cgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATA‑ACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGGATCAACAAATGACCAg > 1:665281‑M2/39‑143 (MQ=255) ttgctgcattcagttttgctccttctcccaaaccaaCGTTCATGAAAATGAAGAAATA‑ACAAGCAAATGGCATCGTTCCTGCTTTTACCAGAGGGATTTAACATGCTGATTCCCTATGTACGATAATCACcaaatgaagtgac > 2:207104‑M2/37‑137 (MQ=255) gctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATA‑ACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAaca > 1:175901‑M2/35‑143 (MQ=255) aCAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATA‑ACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAg > 1:600122/1‑143 (MQ=255) ttgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATA‑ACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATc > 1:679595‑M2/29‑143 (MQ=255) ttgagttttgatccttctcccaaaccaaCGTTTATGAAAATGAAGAAATA‑ACAAGCAAATGGCCTCATTCCTGCATTTAACAGAGGGATTTAACATGCTTATTGGCTATGTCCGCGTATCAACAAACGACCACAACACAGTTc > 2:100842‑M2/29‑143 (MQ=255) ccttctcccaaaccaaCGTTTATGAAAATGAAGAAATA‑ACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTCTTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACACCGTAata > 2:180404‑M2/17‑142 (MQ=255) cccaaaccaaCGTTTATGAAAATGAAGAAATA‑ACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACACCGTCATGCGCTGa > 1:196967‑M2/11‑143 (MQ=255) tgcGTCTATTAAAATGAAGAAACA‑ACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGAGTTAACATGCGTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGAGCTACAACGTAATGCGCTGAACTGTGCa < 2:611415/141‑1 (MQ=255) aCGTTTATGAAAATGAAGAAATA‑ACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTGTGCAg < 2:174649‑M2/142‑1 (MQ=255) | GTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATA‑ACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTGTGCAG > NC_000913/1209477‑1209760 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |