New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1207790 =	56 (0.860)	14 (0.240)	14/252	4.2	20.6%	coding (290/630 nt)	stfP	e14 prophage; uncharacterized protein
	?	NC_000913	1209619 =	58 (1.010)					pseudogene (1/501 nt)	stfE	pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related
Rejected: Coverage evenness skew score above cutoff.

GGTGGAGGCATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCAT  >  NC_000913/1207650‑1207927                                                                                                                                             |                                                                                                                                          ggtggCGGCATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGCCACTGTGCAAACGGCTCTCGAAAACCTTg                                                                                                                                         <  1:35993/143‑1 (MQ=255) gggggAGGCTTCCGGTGCCAGCATGGAGTAGCGGCGGCTGGAGCAGTTGCGTACCGCCCTTCGCGCGCGGCTGTGACGCCGCAAGAATCCTTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAATCCTTg                                                                                                                                         <  2:1026558/140‑1 (MQ=255)  gtggAGGCATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTgg                                                                                                                                        >  1:929665/1‑143 (MQ=255)       ggCATCCTGGTCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTGAGGTCGGTAGCGTCCGTTTGTCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTgg                                                                                                                                   <  2:247422/143‑1 (MQ=18)       ggCATCCGGTGCCAGCCTGGAGAAGGGGCTGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCCAACGGCTCGCGCACACCTCggcgtgg                                                                                                                                   >  1:642843/1‑138 (MQ=17)       ggCATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGCTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTgg                                                                                                                                   <  2:952168/143‑1 (MQ=255)       ggCATCCCGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTgg                                                                                                                                   <  1:390874/143‑1 (MQ=255)        gCATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTggg                                                                                                                                  >  2:489313/1‑143 (MQ=255)            gaggTGCCAGCCTGCAGAAGGGGCGGCACGACCAGTTACTTACCGCACTCCGCGCGCTGCTGTTAAGCCGCCAGGATCCGTTTGGCGATATCAAATCCGATGGCACTGTGCAAACTGCTCTCGAAAACCTTGGTTTGGGAGaa                                                                                                                              <  2:55006/141‑1 (MQ=17)            ccGGGGCCGGCCGGGAGAAGGGGCGGCACGACCAGTTACGTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGaa                                                                                                                              <  2:32616/143‑1 (MQ=255)                      cccggAGAAGGGGCGGCACGACCAGCTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTCTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAAc                                                                                                                    <  1:594176/140‑1 (MQ=255)                      ccTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAAc                                                                                                                    >  1:627675/1‑143 (MQ=255)                          gagaAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTaaa                                                                                                                >  1:496923/1‑143 (MQ=255)                           agaAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAAt                                                                                                               <  1:273422/143‑1 (MQ=255)                            gaAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATg                                                                                                              <  1:807193/143‑1 (MQ=255)                              aGGGGCGGCACGACCAGTTACTGACCGCGCTCCGCGCGCTGCTGTTAAGCCGCAAGAATCCGGTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATgca                                                                                                            <  2:361848/143‑1 (MQ=255)                               ggggCGGCACGAGGAGGTACTGACCGCACGTCGCGCGGTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATAGCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATgcag                                                                                                           <  1:138070/143‑1 (MQ=21)                                gggCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGACGGAGCAAAACTCAATgcagc                                                                                                          >  2:378190/1‑143 (MQ=255)                                  gcggcACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCaa                                                                                                        >  1:610614/1‑143 (MQ=255)                                  gcggcACGACCAGTGACTTACCGCACTCAGCACGATGCTGTTAGGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCaa                                                                                                        <  1:590855/143‑1 (MQ=21)                                               ttacttacCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGATAACCTTGGTGTGGGAGACGGAACCAAACTCAATGCAGCGACGGCTACAGTAgg                                                                                           >  2:1122969/1‑143 (MQ=21)                                                tacttacCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTAAATGCAGCAAAAGCTACATTAGGa                                                                                          >  1:208329/1‑143 (MQ=255)                                                    tacCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAACGCGGCCACGGCTACATGAGGACGCa                                                                                      >  2:329651/1‑143 (MQ=255)                                                     acCGCACTTGGAGCGCTGCTGTTAGGCCGCAAGAATCCGTTTGGCGATAGCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAATCCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCAc                                                                                     <  2:445040/143‑1 (MQ=25)                                                              cgcgcgCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAACCCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCAt                                                                            <  1:299051/143‑1 (MQ=255)                                                                 gcgcTGCTGTTCAGCCGCAAGAGTCCGTGTGGCGAGGTCAAGTCGGATGGCACTGTGTGGTCGGCGCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGc                                                                         <  2:1008945/143‑1 (MQ=25)                                                                     tgctgTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCtata                                                                     >  2:38492/1‑143 (MQ=255)                                                                     tgctgTTAAGCCGCAAGAATCCGTTTAGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATGAGGGCGCACCGGTTTCACAGCtatg                                                                     >  2:39640/1‑142 (MQ=255)                                                                        tgTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCg                                                                  <  1:489313/143‑1 (MQ=255)                                                                         gTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCGATGCAGCGACGGCTACATTAGGACGCACCGGATTCATAGCTATACCgg                                                                 >  1:47333/1‑143 (MQ=255)                                                                           tgaGCCGCAGGAATCCGTGTGCCGATATCAAAGCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGtt                                                               <  1:484010/141‑1 (MQ=255)                                                                                  cAAGAATCCGTTTGGCGATATCGAATCGGATGGAACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCGATGCAGCAACGGCTTTATTTGGACGCACCGGTTTCATAGCTATACCGGTTATGATtg                                                        <  2:1015335/143‑1 (MQ=37)                                                                                     gagtctgTTGGGCGATATCAAATCGGTTGGCACTGTGCAAACTGCTCTCGAACACCTTGGGTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATtggtg                                                     <  2:1082274/137‑1 (MQ=255)                                                                                     gAATCCGTTGGGCGCTACCCAATCGGATGGCACTCCGCAAACCGCTCTCGCAAACCTTGGCTTGCGAGACGGAGCCACCCCCAATGCAGCAACGGCTACATTAGGACGCACCGGTCTCATAGCTATACCGGTTATGATtggtg                                                     <  1:984007/143‑1 (MQ=255)                                                                                        tCCGTTTGGCGATACCAAATCGGATGGCACTTTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTa                                                  <  1:100401/143‑1 (MQ=255)                                                                                            tttGGCGGTATGAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCGAAACTCAAGGCGGCGACGGCTACATTAGGGCGCACCGGTGTCATAGCGATACCGGTTATGATTGGTGGTATTGa                                              <  2:642843/143‑1 (MQ=37)                                                                                            tttGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATAGCGGTTAACATTGCTGGTACTGa                                              >  2:805943/1‑143 (MQ=38)                                                                                            tttGGCGATATCAAAGCGGATGGCACTGTGCAAACGGCGCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGa                                              <  1:244524/143‑1 (MQ=255)                                                                                            ttgggCGATATCAAAGCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGa                                              <  1:696227/140‑1 (MQ=255)                                                                                                  gATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTCTGATTGGTGGTATTGAGCAATc                                        >  1:999340/1‑143 (MQ=255)                                                                                                   atatCAAATCGGACGCCACTGTGCAAGCGGCCCCCGAAACCCTCGGTGTTGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCa                                       <  1:308894/143‑1 (MQ=255)                                                                                                    tatCAAAGCGGGTGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATccg                                      <  2:778907/143‑3 (MQ=255)                                                                                                     atCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTGCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGt                                     >  2:286346/1‑143 (MQ=255)                                                                                                        aaaTCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAAAGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGGGGTATTGAGCAATCAGTAAt                                  >  2:135298/1‑143 (MQ=255)                                                                                                          aTCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTCTTGAGCAACCCGTAATCa                                >  2:663312/1‑143 (MQ=255)                                                                                                                tGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGt                          >  2:918577/1‑143 (MQ=255)                                                                                                                tGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGATATGATTGGTGGTATTGAGCAATAAGTAATCATTCAGt                          >  2:918586/1‑143 (MQ=255)                                                                                                                   cACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCCATACCGGGTATGATTGGTGGTATGGAGCGATCAGTAATCATTCAGTggg                       >  1:158611/1‑143 (MQ=255)                                                                                                                         gCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGCGCAATCAGTAATCATTCAGTGGGGGTGGa                 <  2:1018492/143‑1 (MQ=255)                                                                                                                          cAAACGGCCCGCGAAAACCTTGGTTTGGGAGAAGTAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGaa                <  1:817166/143‑1 (MQ=255)                                                                                                                             aCGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACAGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGCGTTGAGCAACCCGCAATCCGTCCGCGGGGGGGGAAAGc             >  2:92568/1‑143 (MQ=255)                                                                                                                               ggCTCTCGCAACCCTGGGTTTGGCAGAAGGAGCAAAACTCAAGGCAGCAACGGCTACATTAGGACGCACCGGTGTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCg           <  1:110128/143‑1 (MQ=255)                                                                                                                               ggCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCg           <  1:360150/143‑1 (MQ=255)                                                                                                                                 ctctCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAACAACGGCTACACTAGGACGCACCGGTTTCATAGCTATACCGGTTATGCTTGGTGGTACTGAGCAATCAGTAATCATGCAGTGGGGGTCGAAAGCCGcc         >  2:87869/1‑142 (MQ=255)                                                                                                                                  tctcGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCCTTCAGTGGGGGTGGAATGCCGcca        >  2:655560/1‑141 (MQ=255)                                                                                                                                    tcGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGAAGGAACTGGGCGATCAGTAATCATGCAGTGGGGGTGGAATGCCGCaaaa      >  2:402546/1‑143 (MQ=255)                                                                                                                                        aaaCGTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCAt  >  1:121466/1‑143 (MQ=255)                                                                                                                                             |                                                                                                                                          GGTGGAGGCATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCAT  >  NC_000913/1207650‑1207927

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.