| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 2,707,560 | Δ1 bp | coding (242/480 nt) | rseC ← | SoxR iron‑sulfur cluster reduction factor component |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,707,558 | 0 | A | . | 98.2% | 235.9 / ‑3.5 | 55 | coding (244/480 nt) | rseC | SoxR iron‑sulfur cluster reduction factor component |
| Reads supporting (aligned to +/- strand): ref base A (0/0); major base . (25/29); minor base C (0/1); total (25/30) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.99e-01 | |||||||||||
CAAACTTACGCGAGTAGCCGCGCGCAATCAGGAACCCGCCAATACCACCGAGGATCGCACCACATAATGCTGCGACGTCAGAAGCAAAGAGTAGCTGAAATAGCGAAGCGATAAGGAATAATCCCACCAGCGGCGACATATAAACCAGTAATGCGGAGCTAAGCAGGCTGCCTTCGGCGATCCCCAATTCCACTTTTTGCCCCGGCACTAACGGCTCATCACAGGGTACGACAATGGTATGCGTGGTTTGCGGGCCAAGTTTATTTAACACGCGGCTA > NC_000913/2707417‑2707694 | caAACTTACGCGAGTAGCCGCGCGCAATCAGGAACCCGCCAATACCACCGAGGATCGCACCACATAATGCTGCGACGTCAGAAGCAAAGAGTAGCTGAAATAGCGAAGCGATAAGGAATAATCCCACCAGCGGCGACATGTaa > 1:83004/1‑143 (MQ=255)caAACTTACGCGAGTAGCCGCGCGCAATCAGGAACCCGCCAATACAAGCGAGAACCGCACCACATAATGCTGCGACGTCAGAAGCAAAGAGTAGCTGAAATAGCGAAGAGATGAGGCGTAATCCCACCAGCGGCGACATATaa > 2:1094295/1‑143 (MQ=255) cTTCCGCGAGTAGCCGCCCGCAATCAGGAACCCGCCAATACCACCGAGGATCGCACCACATAATGCTGCGACGTCAGAAGCAAAGAGTAGCTGAAATAGCGAAGCGATAAGGAATAATCCCACCAGCGGCGACATATaaccag < 2:621734/143‑5 (MQ=255) aCGCGCGTGGCCGCCAGCACTCCGGATGCCGCACATAACACCGAGGATCGCTCCACATAATGCTGCGACGTCAGAAGCAAAGAGTAGCTGAAATAGCGAAGCGATAAGGAATAATCCCACCAGCGGCGACATAT‑AACCAGTaa < 2:786247/143‑1 (MQ=255) cgcgcgCAATCAGGAACCCGCCAATACCACCGAGGATCGCACCACATAATGCTGCGACGTCAGAGGCAAAGAGTAGCTGAAATAGCGAAGCGATAAGGAATAATCCCACCAGCGGCGACATAT‑AACCAGTAATGCGGAGCTaa > 1:353894/1‑143 (MQ=255) gcgcgcAATCAGGAACCCGCCAATACCACCGAGGATCGCACCACATAATGCTGCGACGTCAGAAGCACAGAGTAGCTGAAATAGCGAAGCGATAAGGAATAATCCCACCAGCGGCGACATAT‑AACCCGTAATACGGAACTAAg > 2:509954/1‑143 (MQ=255) aaTCAGGAACCCGCCAATACCACCGAGGATCGCACCACATAATGCTGCGACGTCAGAAGCAAAGAGTAGCTGAAATAGCGAAGCGATAAGGAATAATCCCACCAGCGGCGACATAT‑AACCAGTAATGCGGAGCTAAGCAGGCt < 1:792549/143‑1 (MQ=255) aGGAACCCGCCAATACCACCGAGGATCGCACCACATAATGCTGCGACGTCCGAAGCGAAGAGTAGCTGAAATAGCGAAGCGATAAGGAATAATCCCACCAGCGGCGACATAT‑AACAAATAATAAAGAGAAAAGCAGGCTACCt > 1:735357/1‑143 (MQ=255) ccGCCAATACCACCGAGGATCGCACCACATAATGCTGCGACGTCAGAAGCAAAGAGTAGCTGAAATAGCGAAGCGATAAGGAATAATCCCACCAGCGGCGACATAT‑AACCAGTAATGCGGAGCTAAGCAGGCTGCCTTCGGcc > 1:730315/1‑142 (MQ=255) ccGCCAATACCACCGAGGATCGCACCACATAATGCTGCGACGTCAGAAGCAAAGAGTAGCTGAAATAGCGAAGCGATAAGGAATAATCCCACCAGCGGCGACATAT‑AACCAGTAATGCGGAGCTAAGCAGGCTGCCTTCGGCg < 1:843153/143‑1 (MQ=255) ccGCCAATACCACCGAGGATCGCACCACATAATGCTGCGACGTCAGAAGCAAAGAGTAGCTGAAATAGCGAAGCGATAAGGAATAATCCCACCAGCGGCGACATAT‑AACCAGTAATGCGGAGCTAAGCAGGCTGCCTTCGGCg > 1:1088449/1‑143 (MQ=255) ccAATACCACCGAGGATCGCACCACATAATGCTTCGACGTCAGAAGCAAAGAGTAGCTGAAATAGCGAAGCGATAAGGAATAATCCCACCAGCGGCGACATAT‑AACCAGTAATGCGGAGCTAAGCAGGCTGCCTTCGGCGATc < 1:1098150/143‑1 (MQ=255) ccAATACCACCGAGGATCGCACCACATAATGCCGCGACGTCAGAAGCAAAGAGTAGCTGAAATAGCGAAGCGATAAGGAATAATCCCACCAGCGGCGACATAT‑AACCAGTAATGCGGAGCTAAGCAGGCTGCCTTCGGCGATc < 1:556672/143‑1 (MQ=255) caaacccccCAGGTTCGCGCCGCATAATGCGGCGACGTCAGAAGCAAAGAGTAGCTGAAATAGCGAAGCGATAAGGAACAATCCCACCAGCGGCGACATAT‑AACCAGTAATGCGGAGCTAAGCAGGCTGCCTTCGGCGATccc < 2:163331/140‑1 (MQ=255) caccGAGGATCGCACCACATAATGCTGCGACGTCAGAAGCAAAGAGTAGCTGAAATAGCGAAGCGATAAGGAATAATCCCACCAGCGGCGACATAT‑AACCAGTAATGCGGAGCTAAGCAGGCTGCCTTCGGCGATCCCCAAtt > 1:191324/1‑143 (MQ=255) caccGAGGATCGCACCACATAATGCTGCGACGTCAGAAGCAAAGAGTAGCTGAAATAGCGAAGCGATAAGGAATAATCCCACCAGCGGCGACATAT‑AACCAGTAATGCGGAGCTAAGCAGGCTGCCTTCGGCGATCCCCAAtt > 2:439445/1‑143 (MQ=255) aGGATCGCACCACATAATGCTGCGACGTCAGAAGCAAAGAGTAGCTGAAATAGCGAAGCGATAAGGAATAATCCCACCAGCGGCGACATAT‑AACCAGTAATGCGGAGCTAAGCAGGCTGCCTTCGGCGATCCCCAATTCCACt < 2:356843/143‑1 (MQ=255) ggATCGCACCACATAATGCTGCGACGTCAGAAGCAAAGAGTAGCTGAAATAGCGAAGCGATAAGGAATAATCCCACCAGCGGCGACATAT‑AACCAGTAATGCGGAGCTAAGCAGGCTGCCTTCGGCGATCCCCAATTCCACtt < 1:71382/143‑1 (MQ=255) aTCGCACCACATAATGCTGCGACGTCAGAAGCAAAGAGTAGCTGAAATAGCGAAGCGATAAGGAATAATCCCACCCGCGGCGACATAT‑AACCAGTAATGCGGAGCTAAGCAGGCTGCCTTCGGCGATCCCCAATTCCACtttt < 2:451415/143‑1 (MQ=255) tCGCACCACATAATGCTGCGACGTCAGAAGCAAAGAGTAGCTGAAATAGCGAAGCGATAAGGAATAATCCCACCAGCGGCGACATAT‑AACCAGTAATGCGGAGCTAAGCAGGCTGCCTTCGGCGATCCCCAATTCCACttttt < 1:717036/143‑1 (MQ=255) caccacATAATGCTGCGACGTCAGAAGCAAAGAGTAGCTGAAATAGCGAAGCGATAAGGAATAATCCCACCAGCGGCGACATAT‑AACCAGTAATGCGGAGCTAAGCAGGCTGCCTTCGGCGATCCCCAATTCCCCTTTTTGcc > 1:471172/1‑143 (MQ=255) aaTGCTGCGACGTCAGAAGCAAAGAGTAGCTGAAATAGCGAAGCGATAAGGAATAATCCCACCAGCGGCGACATAT‑AACCAGTAATGCGGAGCTAAGCAGGCTGCCTTCGGCGATCCCCAATTCCACTTTTTGCCCCGGCACt > 2:1009509/1‑143 (MQ=255) gACGTCAGAAGCAAAGAGTAGCTGAAATAGCGAAGCGATAAGGAATAATCCCACCAGCGGCGACATAT‑AACCAGTAATGCGGAGCTAAGCAGGCTGCCTTCGGCGATCCCCAATTCCACTTTTTGCCCCGGCACTAACGGCtc < 2:470532/143‑1 (MQ=255) aGAAGCAAAGAGTAGCTGAAGTAGCGAAGCGAGAAGGAATAATCCCACCAGCGGCGACATAT‑AACCAGTAATGCGGAGCTAAGCAGGCTGCCTTCGGCGATCCCCAATTCCACTTTTTGCCCCGGCACTAACGGCCCATcaca > 2:582116/1‑143 (MQ=255) aGAAGCAAAGAGTAGCTGAAATAGCGAAGCGATAAGGAATAATCCCACCAGCGGCGACATAT‑AACCAGTAATGCGGAGCTAAGCAGGCTGCCTTCGGCGATCCCCAATTCCACTTTTTGCCCCGGCACTAACGGCTCATcaca < 1:923095/143‑1 (MQ=255) aaGCAAAGAGGAGGTGAAATAGCGAAGCGATAAGGAATAAGCGCACCAGCGGCGACATAT‑AACCAGTAATGCGGAGCTAAGCAGGCTGCCTTCGGCGATCCCCAATTCCACTTTTTGCCCCGGCACTAACGGCTCATCACAgg < 2:69870/143‑1 (MQ=255) aGCAAAGAGTAGCTGAAATAGCGAAGCGATAAGGAATAATCCCACCAGCGGCGACATAT‑AACCAGTAATGCGGAGCTAAGCAGGCTGCCTTCGGCGATCCCCAATTCCACTTTTTGCCCCGGCACTAACGGCTCACCACAggg > 2:209586/1‑143 (MQ=255) gCAAAGAGTAGCTGAAATAGCGAAGCGATAAGGAATAATCCCACCAGCGGCGACATAT‑AACCAGTAGTGCGGAGCTAAGCAGGCTGCCTTCGGCGATACCCAATTCCACTTTTTGCCCCGGCACTAACGGCTCATCACAGGGt > 2:247346/1‑143 (MQ=255) cAAAGAGTAGCTGAAATAGCGAAGCGATAAGGAATAATCCCACCAGCGGCGACATAT‑AACCAGTAATGCGGAGCTAAGCAGGCTGCCTTCGGCGATCCCCAATTCCACTTTTTGCCCCGGCACTAACGGCTCATCACAGGGtc > 1:876141/1‑142 (MQ=255) cAAAGAGTAGCTGAAATAGCGAAGCGATAAGGAATAATCCCACCAGCGGCGACATAT‑AACCAGTAATGCGGAGCTAAGCAGGCTGCCTTCGGCGATCCCCAATTCCACTTTTTGCCCCGGCACTAACGGCTCATCACAGGGTa < 1:264687/143‑1 (MQ=255) aaaGAGTAGCTGAAATAGCGAAGCGATAAGGAATAATCCCACCAGCGGCGACATAT‑AACCAGTAATGCGGAGCTAAGCAGGCTGCCTTCGGCGATCCCCACTTCCACTTTTTGCCCCGCACCTAACGGCTCATCACAAGGtcc > 2:459928/1‑141 (MQ=255) aaaGAGTAGCTGAAATAGCGAAGCGATAAGGAATAATCCCACCAGCGGCGACATAT‑AACCAGTAATGCGGAGCTAAGCAGGCTGCCTTCGGCGATCCCCAATTCCACTTTTTGCCCCGGCACTAACGGCTCATCACAGGGTAc > 1:1039799/1‑143 (MQ=255) tAGCCGAAATACCGAAGCGATAAGGAATAATCCCACCAGCGGCGAGATAT‑AACCAGTAATGCGGAGCTAAGTAGGCTGCCTTCGGCGATCCCCAATTCCACTTTTTGCCCCGGCACTAACGGCTCATCACAGGGTACGACAAt < 1:700686/143‑1 (MQ=255) aGCTGAGATAGCGAAGCGATAAGGAATAATCCCACCAGCGGCGACATAT‑AACCAGTAATGCGGAGCTAAGCAGGCTGCCTTCGGCGATCCCCAATTCCACTTTTTGCCCCGGCACTAACGGCTCATCACAGGGTACGACAATg < 1:3303/143‑1 (MQ=255) gcggAAATAGCGAAGCGATAAGGAATAATCCCACCAGCGGCGACATAT‑AACCAGTAATGCGGAGCTAAGCAGGCTGCCTTCGGCGATCCCCAATTCCACTTTTTGCCCCGGCACTAACGGCTCATCACAGGGTACGACAATgg < 1:1094295/140‑1 (MQ=255) cTGAAATAGCGAAGCGATAAGGAATACTCCCACCAGCGGCGACATAT‑AACCAGTAATGCGGAGCTAGGCAGGCTGCCTTCGGCGATCCCCAATGCCCCGTTTTGCCCCGGCACTAACGGCTCATCACAGGGTACGACAATGGt < 2:149839/143‑1 (MQ=255) cTGAAATAGCGAAGCGATAAGGAATAATCCCACCAGCGGCGACATAT‑ACCCAGTAATGCGGAGCTAAGCAGGCTGCCTTCGGCGGTCCCCAATTCCACTTTTTGCCCCGGCACTAACGGCTCATCACAGGGTCCGACACTGGt > 1:699002/1‑143 (MQ=255) cTGAAATAGCGAAGCGATAAGGAATAATCCCACCAGCGGCGACATAT‑AACCAGTAATGCGGAGCTAAGCAGGCTGCCTTCGGCGATCCCCAATTCCACTTTTTGCCCCGGCACTAACGGCTCATCAGAGGGTCCGACAATgga > 2:589622/1‑142 (MQ=255) tGAAATAGCGAAGCGATAAGGAATAATCCCACCAGCGGCGACATAT‑AACCAGTAATGCGGAGCTAAGCAGGCTGCCTTCGGCGATCCCCAATTCCACTTTTTGCCCCGGCACTAACGGCTCATCACAGGGTACCACAATGGTa > 2:695107/1‑143 (MQ=255) gAAATAGCGAAGCGATAAGGAATAATCCCACCAGCGGCGACATAT‑AACCAGTAATGCGGAGCTAAGCAGGCTGCCTTCGGCGATCCCCAATTCCACTTTTTGCCCCGGCACTAACGGCTCATCACAGGGTACGACAATGGTAt < 1:873299/143‑1 (MQ=255) gAAATAGCGAAGCGATAAGGAATAATCCCACCAGCGGCGACATAT‑AACCAGTAATGCGGAGCTAAGCAGGCTGCCTTCGGCGATCCCCAATTCCACTTTTTGCCCCGGCACTAACGGCTCATCACAGGGTACGACAATGGTAt > 2:1105138/1‑143 (MQ=255) aaaTAGCGAAGCGATAAGGAATAATCCCACCAGCGGCGACATAT‑AACCAGTAATGCGGAGCTAAGCAGGCTGCCTTCGGCGATCCCCAATTCCACTTTTTGCCCCGGCACTAACGGCTCATCACAGAGCACGACAATGGTATg > 2:32892/1‑143 (MQ=255) agcgaagcgaTAAGGAATAATCCCACCAGCGGCGACATAT‑AACCAGTAATGCGGAGCTAAGCAGGCTGCCTTCGGCGATCCCCAATTCCACTTTTTGCCCCGGCACTAACGGCTCATCACAGGGTACGACAATGGTATGCGTg < 1:488866/143‑1 (MQ=255) gaagcgaGAAGGAATAATCCCACCAGCGGCGACATAT‑AACCAGTAATGCGGAGCTAAGCAGGCTGCCTTCGGCGATCCCCAATTCCACTTTTTGCCCCGGCACTAACGGCTCATCACAGGGTACGACAATGGTATGCGTGGtt < 1:732518/143‑1 (MQ=255) gccatgaGGAATACTCCCACCCGCGGCGCCATAT‑AGCCAGTAATGCGGAGCGAAGCAGGCTGCCTTCGGTGATCCCCAATGCCACTTTTTGCCCCGGCACGAACGGCTCATCACAGGGTACGACAATGGTATGCGTGGTTTGc < 2:476326/137‑1 (MQ=255) gacaaGGAACACTCCCACCCGCGGCGACATAT‑AACCAGGAATGCGGAGCTCAGCAGGCTGCCTTCGGCGATCCCCAATTCCACTTTTTGCCCCGGCACTAACGGCTCATCACAGGGTACGACAATGGTATGCGTGGTTTGCgg < 1:82850/140‑1 (MQ=255) gaTAAGGACTACTCCCACCAGCGGCGACATA‑CAACCAGCACGGCGGAGCTAAGCAGGCTGCCTTCGCCGATCCCCAGTTCCACTTTTTGCCCCGGCACTAACGGCTCATCACAGGGTACGACAATGGTATGCGTGGTTTGCgg < 1:82335/143‑1 (MQ=255) aaGGAATAATCCCACCAGCGGCGACATAT‑AACCAGTAATGCGGAGCTAAGCAGGCTGCCTTCGGCGATCCCCAATTCCACTTTTTGCCCCGGCACTAACGGCTCATCAGAGGGGACGAGAAGGGTATGCGTAGTATGAGGGcc > 1:851349/1‑143 (MQ=255) aaGGAATAATCCCACCAGCGGCGACATAT‑AACCAGTAATGCGGAGCTAAGCAGGCTGCCTTCGGCGATCCCCAATTCCACTTTTTGCCCCGGCACTAACGGCTCATCACAGGGTACGACAATGGTATGCGTGGTTTGCGGGcc < 1:1009509/143‑1 (MQ=255) aGGAATAATCCCACCAGCGGCGACAGAT‑AACCAGTAATGCGGAGCTAAGCAGGCTGCCTTCGGCGATCCCCAATGCCACTTTTTGCCCCGGCACTAACGGCGCATCACAGGGTACGACAATGGTATGCGTGGTTTGCGGGGCa > 1:18088/1‑143 (MQ=255) gAATAATCCCACCAGCGGCGACATAT‑AACCAGTAATGAGGAGCTAAGCAGACTGCCTTCGGCGATCCCCAATTCCAAAATGCGGTCCGTCACTAACGGCGCGTCAGAGGGTACGACAATGGTATGCGTGGTTTGCGGGCCAAg > 1:413620/1‑143 (MQ=255) tacccccACCCGCGTCGACATAT‑CACCCGTAATGCGGAGCTATTCAGGCTGCCTTCGGCGATCCCCCCTTCCACTTGTTGCCCCCGCACTAACCGCTCATCACCGGGTACGACACTGGTATCCGTGGTTTGCGGGCCAAGttt < 2:876767/139‑1 (MQ=255) ggagcccACCGGCGGCGAGATAT‑AACCAGTAGTGCGGGGCTAAGCAGGCTGCCTTCGGCGCTCCCCAATTCCGCTTTTTGCCGCGGCAGTAGCGGCTCATGACAGGGTACGACAATGGTATGCGTGGTTTGCGGGCCAAGttt < 2:482796/139‑1 (MQ=255) tCCCACCGGCGGCGACATAT‑AACCACTAACGCGCAGCTAAACACGCCTCCACCAGCGATCCCCAATACCACTTTTTGCCCCGGCACTAACGGCTCATCACAGGGTACGACAATGGTATGCGTGGTTTGCGGGCCAAGtttatt < 2:730315/143‑1 (MQ=255) tCCCACCAGCGGCGACATAT‑AACCAGTAATGCGGAGCTAAGCAGGCTGCCTTCGGCGATCCCCAATTCCACTTTTTGCCCCGGCACTAACGGCTCATCACAGGGTACGACAATGGTATGCGTGGTTTGCGGGCCAAGtttatt < 1:631396/143‑1 (MQ=255) tCCCACCAGCGGCGACATAT‑AACCAGTAATGCGGAGCTAAGCAGGCTGCCTTCGGCGATCCCCAATTCCACTTTTTGCCCCGGCACTAACGGCTCACCACAGGGTACGCCAACGGTATGCGTGGCTTGCGGGCCAAGtctctc > 2:954883/1‑138 (MQ=255) ggcgACATAT‑AACCCGTAATGCGAAGCTAAGCATGCTGCCTTCGGCGATCCCCAATTCCACTTTTTGCCCCTGCACTAACGGCTCATCACAGGGTACGACAATGGTATGCGTGGTTTGCGGGCCAAGTTTATTTAACACGCgg < 1:509954/143‑1 (MQ=255) gACATAT‑AACCAGTAATGCGGAGCTAAGCAGGCTGCCTTCGGCGATCCCCAATTCCACTTTTTGCCCCGGCACTAACGGCTCATCACAGGGTACGACAATGGTATGCGTGGTTTGCGGGCCAAGTTTATTTAACACGCGGCTa > 1:796412/1‑143 (MQ=255) | CAAACTTACGCGAGTAGCCGCGCGCAATCAGGAACCCGCCAATACCACCGAGGATCGCACCACATAATGCTGCGACGTCAGAAGCAAAGAGTAGCTGAAATAGCGAAGCGATAAGGAATAATCCCACCAGCGGCGACATATAAACCAGTAATGCGGAGCTAAGCAGGCTGCCTTCGGCGATCCCCAATTCCACTTTTTGCCCCGGCACTAACGGCTCATCACAGGGTACGACAATGGTATGCGTGGTTTGCGGGCCAAGTTTATTTAACACGCGGCTA > NC_000913/2707417‑2707694 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |