New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 120780551 (0.830)11 (0.200) 11/252 4.8 18.8% coding (305/630 nt) stfP e14 prophage; uncharacterized protein
?NC_000913 = 1209602 50 (0.910)pseudogene (18/501 nt) stfE pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTGGGGGGGA  >  NC_000913/1207664‑1207943
                                                                                                                                             |                                                                                                                                           
gTGCCAGCCTGGAGACGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTTCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGa                                                                                                                                            <  1:54706/143‑1 (MQ=255)
  gCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGATACCCCTGGTTTGGGAGAAggctc                                                                                                                                          >  1:113354/1‑140 (MQ=255)
   ccAGCCTGGAGAAGGGGTGGCACGACCAGTCACTTACCTCACTTCGCGCGCTGCTGTTAAGCCGCAAGAAGCCGGTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAggctct                                                                                                                                         <  2:167334/143‑5 (MQ=17)
      gCCTGGAGAGGGGGCGGCACGACCAGTTACTTACCGCACGGCGCGCGCTGCTGTGAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCaaaa                                                                                                                                      <  2:261897/143‑1 (MQ=255)
       ccTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGACGGAGCAAAAc                                                                                                                                     >  1:154214/1‑143 (MQ=255)
         tGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTc                                                                                                                                   >  1:220492/1‑143 (MQ=255)
          ggagggggggCGGCACGACCAGTTACGTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCa                                                                                                                                  <  2:305289/137‑1 (MQ=255)
                  ggcggcACGACCAGTTACGTGCCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAAGCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATgcagca                                                                                                                          <  2:742048/143‑1 (MQ=255)
                   gcggcACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGACTCCGTTTGGCGATATCAGATCGGATGGCGCTGTGGAAACGGCTCTGGGAGACCTAGGTTTGGGAGAAGGAGCAGAAGTCAGTCCGGCaa                                                                                                                         >  2:345087/1‑143 (MQ=18)
                   gcggcACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTCGCGATATCAAATCGGATGGCACTATGCAAACGGCTCTCGAAAACATTGGATTCGGAGAAGGAGCAACACGCAATGCAGCaa                                                                                                                         >  2:33426/1‑143 (MQ=21)
                        aCGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTATCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCACTGCAGCAACGGCt                                                                                                                    >  1:585395/1‑143 (MQ=255)
                           aCCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACa                                                                                                                 <  1:844306/143‑1 (MQ=255)
                            ccAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACAt                                                                                                                >  1:175715/1‑143 (MQ=255)
                                  acttacCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGAc                                                                                                          <  1:391243/143‑1 (MQ=255)
                                    ttacCGTACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGAGGGCACTGTGCAAACGGCTCTCGAAAACCTTGGATTGGGAGAAGGCGCAAAACTCAATGCAGCAACGGCTACAAGCGGACGc                                                                                                        >  1:929176/1‑143 (MQ=18)
                                    ttacCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCCTGGGTTGGGAGAAGGAGCAAAACTCAGTGCAGCAACAGCTACCTCAGGACga                                                                                                        >  2:827790/1‑142 (MQ=21)
                                        cGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGCGCAAACCTCAATGCAGCAACGGCTACATTAGGACGCACCg                                                                                                    >  1:485076/1‑143 (MQ=255)
                                           gcTTCGCGCGCTGCGGTTAAGCCGCAAGAAGCCGTTTGGCGATATCAAATCGGATGGCACGGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGtt                                                                                                 <  2:863835/142‑1 (MQ=255)
                                                gcgcgcTGCTGTAAAGCCGCAAGATGCGGTTTGGCGAGATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATa                                                                                            <  2:906847/143‑1 (MQ=25)
                                                 cgcgcTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCTTATCTGATGGCACTGTGCAAACGGCTCTCGAAAACCGGGGTGGGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAg                                                                                           <  1:621511/143‑1 (MQ=25)
                                                           ttAAGCCGCAAGAACCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCCCTCGAAAACCTTGGTTCGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGt                                                                                 <  1:661021/143‑1 (MQ=255)
                                                              cgCCGCAAGCATCCGTTTGGCGATATCCAATCGGATGGCACTGTGCAAATGGCTCTCGAAAACCATGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTAt                                                                              <  2:904759/142‑1 (MQ=255)
                                                                ccGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGa                                                                            >  1:745219/1‑143 (MQ=255)
                                                                 cgggagagTCCGTTTGGCGATATCAAATGGGATGGCACTGTGCAAACAGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGGACCGGTTTCATAGCTATACCGGTTATGAt                                                                          <  2:286642/139‑1 (MQ=37)
                                                                    aaGACTCCGTTTGGCGACAGCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATtgg                                                                       <  1:780330/143‑1 (MQ=255)
                                                                      gAATCCGTTTCGCGATATCGAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATtggtg                                                                     <  2:1050728/143‑1 (MQ=255)
                                                                           cGTGTGGCGATATCAAATCGGATGGCACGGGGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAAGGCAGCAACGGCTACATTAGGACGTTCCTGTTTCAGAGCTATACCGGTTATGATTGGTGGTAtt                                                                <  1:1065983/143‑1 (MQ=37)
                                                                            gTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGGTTGGTGGTGTTg                                                               >  1:218827/1‑143 (MQ=255)
                                                                              ttGGCGATATCAAAACGGAGGGCACGGTGCAAACGGCTCTCGAAAACCGTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAg                                                             <  1:199741/143‑1 (MQ=255)
                                                                                 gCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCaa                                                          >  1:556468/1‑143 (MQ=255)
                                                                                 gCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGGATTGGGCag                                                          >  1:162665/1‑142 (MQ=255)
                                                                                  cGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAAt                                                         <  1:958444/143‑1 (MQ=255)
                                                                                  cGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAAt                                                         <  1:741904/143‑1 (MQ=255)
                                                                                   gATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACATTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGAAAta                                                        >  1:569093/1‑142 (MQ=255)
                                                                                   gATATCAAATCGGATGGCACTGTGCAAACGACTCTCGAAACCCTTGCTTTGGGAGAAGGAGCAAAACACAATGCAGCAACGGCTACATTAGGACGCACCGGCTGCATAGCTATACCGGTTATGATTGTTGGTATTGAGCAATc                                                        >  2:449011/1‑143 (MQ=255)
                                                                                        cAAATCTGATGGCACTGTGCAAACGGCTCTCGAAAACCGTGGTTGGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTaa                                                   <  1:835068/143‑1 (MQ=255)
                                                                                          aaTCGGATGGCACTGTGCAAACGGCTCTCGAAAACATTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACAGTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATGGGTGGGATTGGGCAATCAGTAATc                                                 >  2:283522/1‑143 (MQ=255)
                                                                                            tCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGGGGACATGAGCAATCAGTAATCAt                                               >  2:832873/1‑143 (MQ=255)
                                                                                                 tGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGGTTAATAGCTATACCGTTTATGGTTGGTGGTATTGAGCAATCAGTAATCATTCAGt                                          >  1:697535/1‑143 (MQ=255)
                                                                                                     aCTGTGCAAACGGCTCTCGAAACCCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTgggg                                      <  2:221925/143‑1 (MQ=255)
                                                                                                        gtgCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTAGGATTGGTGGTATTGAGCACGCAGCAATCATCCGGTggggggg                                   >  1:147446/1‑141 (MQ=255)
                                                                                                           cAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGaa                                <  1:303097/143‑1 (MQ=255)
                                                                                                                    tccataaaCGTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTAATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCaaa                       <  1:340582/138‑1 (MQ=255)
                                                                                                                    ctcGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCCGTGGGGGTGGAATGCCGCcaa                       >  2:769198/1‑143 (MQ=255)
                                                                                                                     tcGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCaaaa                      >  1:822299/1‑143 (MQ=255)
                                                                                                                       gAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCCTAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGc                    <  1:770054/143‑1 (MQ=255)
                                                                                                                       ataaaCGTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGAATGGTGGTATGGAGCCATCAGTAATCAGTCAGTGGGGGTGGAATGCTGCCAAAGc                    >  2:152445/3‑143 (MQ=255)
                                                                                                                        aaaaCCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCa                   >  1:975619/1‑143 (MQ=255)
                                                                                                                        aaaaCCGTGGTTTGGGACAAGGAGCAAAACTCAATCCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATCCCCGTTATGATTTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGc                    <  1:158066/143‑1 (MQ=255)
                                                                                                                                     gggAGAAGGAGCAAAACTCTCGGGTGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTgggg      <  2:1023502/143‑1 (MQ=255)
                                                                                                                                      ggAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTggggg     <  2:877976/143‑1 (MQ=255)
                                                                                                                                      ggAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTggggg     <  1:938996/143‑1 (MQ=255)
                                                                                                                                         gaAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGTAATGCCGCAAAAGCATCTGCCTCTGGGGGGGa  <  1:610379/143‑1 (MQ=255)
                                                                                                                                             |                                                                                                                                           
GTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTGGGGGGGA  >  NC_000913/1207664‑1207943

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.