New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 228183 =NA (NA)3 (0.050) 3/280 9.5 5.4% noncoding (2425/2904 nt) rrlH 23S ribosomal RNA of rrnH operon
?NC_000913 = 916812 53 (0.860)coding (340/1659 nt) ybjD putative OLD family ATP‑dependent endonuclease; DUF2813 family protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

ATCAACGGGCGAGAACATCATCTGCATATTATTTTGACCTTCCGCGAATCGCTGCCAGGCCGACATCGGGTTCGCCGTTATCGGCCGCTGGAAGCGTGCTGGACGCCATGCACCGATGGCTATCACCGTATTTTTTATCGTCTGGAAGGGGAGAGTGCGGAAGACGGCAGCGTGATGACACTGCGCAGTTTTCTCGATAAAGACGGACATCCGATTGATGTCGAGGATATTAACGATCAGGCACGCCATCTGGTGCGTTTAATGCCGGTGCTGCGCTTGCGTGA  >  NC_000913/916671‑916954
                                                                                                                                             |                                                                                                                                              
atCCACGGGCGAGAACATCATCTGCATATTATTTTGACCTTCCGCGAATCGCTGCCAGGCCGCCACCGGGTTCGCCGTTATCGGCCGCTGGAAGCGTGCTGGACGCCATGCACCGATGGCTATCACCGTATTTTTTATCGTCt                                                                                                                                               <  1:816882/143‑1 (MQ=255)
atCAACGGGCGAGAACATCATCTGCATATTATTTTGACCTTCCGCGAATCGCTGCCAGGCCGACATCGGGTTCGCCGTTATCGGCCGCTGGAAGCGTGCTGGACGCCATGCACCGATGGCTATCACCGTGTTTTTTATCGTCt                                                                                                                                               >  1:803823/1‑143 (MQ=255)
atCAACGGGCGAGAACATCATCTGCATATTATTTTGACCTTCCGCGAATCGCTGCCAGGCCGACATCGGGTTCGCCGTTATCGGCCGCTGGAAGCGTGCTGGACGCCATGCACCGATGGCTATCACCGTATTTTTTATCGGCt                                                                                                                                               >  1:874900/1‑143 (MQ=255)
atCAACGGGCGAGAACATCATCTGCATATTATTTTGACCTTCCGCGAATCGCTGCCAGGCCGACATCGGGTTCGCCGTTATCGGCCGCTGGAAGCGTGCTGGACGCCATACACCGATGGCTCTCACCGTATTTTTTATCGTcc                                                                                                                                               >  2:569862/1‑142 (MQ=255)
  cAACGGGCGAGAACATCATCTGCATATTATTTTGACCTTCCGCGAATCGCTGCCAGGCCGACATCGGGTTCGCCGTTATCGGCCGCTGGAAGCGTGCTGGACGCCGTGCACCGGTGGCTATCACCGTGTTTTTTATCGTcctc                                                                                                                                             >  2:995373/1‑140 (MQ=255)
  cAACGGGCGAGAACAGCATCTGCATATTATTTTGACCTTCCGCGAATCGCTGCCAGGCCGACATCTGGTTCGCCGTTATCGGCCGCTGGAAGCGTGCTGGACGCCATGCACCGATGGCTCTCCCCGTATGTCATATCGTcccg                                                                                                                                             >  2:55246/1‑140 (MQ=255)
   aaCGGGCGAGAACATCATCTGCATATTATTTTGACCTTCCGCGAATCGCTGCCAGGCCGACATCGGGTTCGCCGTTATCGGCCGCTGGAAGCGTGCTGGACGCCATGCACCGATGGCTATCGCCGTCTTTTTTATCGTCTggg                                                                                                                                            >  1:271610/1‑142 (MQ=255)
      gggCGAGGACATCATCTGCCTATTATTTTGTCCTTCCGGGAATCGCTGCCAGGCCGACGTCGGGTTCGCCGTTATCGGCCGCTGGAAGCGTGCTGGACGCCATGCAGGGATGGCTATCGCCGTATTTTTTATCGTCTGGAAgg                                                                                                                                         <  2:81857/143‑1 (MQ=255)
      gggCGAGAACATCATCTGCATATTATTTTGACCTTCCGCGAATCGCTGCCAGGCCGACATCGGGTTCGCCGTTATCGGCCGCTGGAAGCGTGCTGGACGCCATGCACGGATGGCTATCACCGTATTTTTTATCGTCTGGAAgg                                                                                                                                         >  1:370380/1‑143 (MQ=255)
                   atgtGCATATTATTTTGACCTTCCGCGATGCGCTTCCAGGCCCACACCGGGTTCGCCGTTATCGGCCGCTGGAAGCGTGCTGGACGCCATGCACCGATGGCTATCACCGTATTTTTGATCGTCTGGAAGGGGAGAGTGCGGaa                                                                                                                            <  1:481148/140‑1 (MQ=255)
                   atcTGCATATTATTTTGACCTTCCGCGAATCGCTGCCAGGCCGACATCGGGTTCGCCGTTATCGGCCGCTGGAAGCGTGCTGGCCGCCATGCACCGATGGCTATCACCGTATTTTTTATCGGCTGGAAGGGGagagcacggca                                                                                                                            >  2:899986/1‑136 (MQ=255)
                     cTGCATATTATTTCGACCGTCCGCGAGTCGGTGCGAGGCCGAGCTCGGCCTCACCGTGATCGGCCGCTGGAAGCGTGCTGGACGCCATGCAGCGATGGCTATCACCGTATTTGTTATCGTCTGGAAGGGGAGAGTGCGGAAGa                                                                                                                          <  2:729010/143‑1 (MQ=255)
                        cATATTATTTTGACCTTCCGCGAATCGCTGCCAGGCCGACATCGGGTTCGCCGTTATCGGCCGCTGGAAGCGTGCTGGACGCCATGCACCGATGGTTATCACCGTATTTTTTATCGTCTGGAAGGGga                                                                                                                                      >  1:11997/1‑128 (MQ=255)
                        cATATTATTTTGACCTTCCGCGAATCGCTGCCAGGCCGACATCGGGTTCGCCGTTATCGGCCGCTGGAAGCGTGCTGGACGCCATGCACCGATGGTTATCACCGTATTTTTTATCGTCTGGAAGGGga                                                                                                                                      <  2:11997/128‑1 (MQ=255)
                         atatTATTTTGACCTTCCGCGAATCGCTGCCAGGCCGACATCGAGTTCGCCGTTATCGGCCGCTGGAAGCGTGCTGGACGCCATGCACCGATGGCTATCACCGTATTTTTTATCGTCTGGAAGGGGAGAGTGCGGAAggcggc                                                                                                                      >  1:210950/1‑143 (MQ=255)
                          tattatTTTGACCTTCCGCGAATCGCTGCCAGGCCGACATCGGGTTCGCCGTTATCGGCCGCTGGAAGCGTGCTGGACGCCATGCACCGATGGCTATCCCCGTATTTTTTATCGTCTGGAAGGGGAGAGTGCGGAAGACGGCa                                                                                                                     >  2:299569/1‑143 (MQ=255)
                          tattatTTTGACCTTCCGCGAATCGCTGCCAGGCCGACATCGGGTTCGCCGTTATCGGCCGCTGGAAGCGTGCTGGACGCCATGCACCGATGGCCATCACCGTATTTTTTATCGTCTGGCCGGGGAGAGTGCGGGAGACGGCa                                                                                                                     >  2:865430/1‑143 (MQ=255)
                              attTTGACCTTCCGCGAATCGCTGCCAGGCCGACATCGGGTTCGCCGTTATCGGCCGCTGGAAGCGTGCTGGACGCCATGCACCGATGGCTATCACCGTATTTTTTATCGTCTGGAAGGGGAGAGTGCGGAAGACGGCAGCGt                                                                                                                 <  1:67498/143‑1 (MQ=255)
                              agtttGGCCTGCCGCGGAGCGCTGCCTGGCCGACATCGGGTTCGCCGTTAGCGGCCGCTGGAAGCGTGCTGGACGCCATGCACCGATGGCTATCACCGTATTTTTTATCGTCTGGAAGGGGAGAGTGCGGAAGACGGCAGCGt                                                                                                                 <  2:1072189/141‑1 (MQ=255)
                                tttGACCTTCCGCGAATCGCTGCCAGGCCGACATCGGGTTCGCCGTTATCGGCCGCTGGAAGCGTGCTGGACGACATGCACCGATGGCTATCACCGTATTTTTTATCGTCTGGAAGGGGGGGGTGCGGAAGACGGCAGCGtga                                                                                                               >  2:804925/1‑143 (MQ=255)
                                 tgggccTGCCGGGAAGCGCTGCGAGGCCGACATCGGGTTCGCGGTTATCGGCCGCGGGAAGCGTGCTGGACGCCATGCACCGATGGCTATCACCGTATTTTTTATCGTCTGGAAGGGGAGAGTGCGGAAGACGGCAGCGtgat                                                                                                              <  2:821784/139‑1 (MQ=255)
                                      cTTCCGCGAATCGCTGCCAGGCCGACATCGGGTTCGCCGTTATCGGCCGCTGGAAGCGTGCTGGACGCCATGCACCGATGGCTATCACCGTATTTTTTATCGTCTGGAGGGGGAGAGTGCGGAAGACGGCAGCGTGGTGacac                                                                                                         >  1:832356/1‑143 (MQ=255)
                                       ttCCGCGAATCGCTGCCAGGCCGACATCGGGTTCGCCGTTATCGGCCGCTGGAAGCGTGCTGGACGCCATGCACCGATGGCTATCACCGTATTTTTTATCGTCTGGAAGGGGAGAGTGCGGAAGACGGCAGCGTGATGACACt                                                                                                        >  1:133518/1‑143 (MQ=255)
                                          cgcgAATCGCTGCCAGGCCGACATCGGGTTCGCCGTTATCGGCCGCTGGAAGCGTGCTGGACGCCATGCCCCGATGGCTATCACCGTATTTTTTATCGTCTGGTAGGGGCGAGGGCGGGAGACGGCAGCGTGATGACCCcgcg                                                                                                     >  1:884353/1‑143 (MQ=255)
                                           gcgAATCGCTGCCAGGCCGACATCGGGTTCGCCGTTATCGGCCGCTGGAAGCGTGCTGGACGCCCTGCACCGATGGCTATCACCGTATTTTTTATCGTCTGGAAGGGGGGAGTGCGGCAGACGGCAGCGTGATGCCACGgcgc                                                                                                    >  1:125316/1‑143 (MQ=255)
                                                   cTGCCAGGCCGACATCGGGTTCGCCGTTATCGGCCGCTGGAAGCGTGCTGGACGCCATGCACCGATGGCTATCACCGTATTTTTTATCGTCTGGAAGGGGAGAGCGCGGAAGACGGCCGCGTGATGACACTGCGCAGTTTtct                                                                                            >  1:496992/1‑143 (MQ=255)
                                                         ggCCGACATCGGGTTCGCCGTTATCGGCCGCTGGAAGCGTGCTGGACGCCATGCACCGATGGCTATCACCGTATTTTTTATCGTCTGGCAGGGGAGAGTGCGGCAGACGGCAGCGTGATGCCCCTGCGCAGTTTCCTCGAtca                                                                                      >  1:835403/1‑141 (MQ=255)
                                                           ccGACATCGGGTTCGCCGTTATCGGCCGCTGGAAGCGTGCTGGACGCCATGCACCGATGGCTATCACCGTATTTTTTATCGTCTGGAAGGGGAGAGTGCGGACGACGGCAGCGTGATGACACTGCGCAGTTTTCTCGATAAAg                                                                                    >  2:330363/1‑143 (MQ=255)
                                                            cGACATCGGGTTCGCCGTTATCGGCCGCTGGAAGCGTGCTGGACGCCATGCACCGATGGCTATCACCGTATTTTTTATCGTCTGGAAGGGGAGAGTGCGGAAGCCGGCAGCGGGATGACACTGCGCAGGTTTCTCGATAAAGa                                                                                   >  1:311617/1‑143 (MQ=255)
                                                                       tCGCCGTTATCGGCCGCTGGAAGCGTGCTGGACGCCATGCACCGATGGCTATCACCGTATTTTTTATCGTCTGGAAGGGGAGAGTGCGGAAGACGGCAGCGTGATGACACTGCGCAGTTTTCTCGATAAAGACGGACATCCGa                                                                        <  1:978983/143‑1 (MQ=255)
                                                                         gCCGTTATCGGCCGCTGGAAGCGTGCTGGACGCCATGCACCGATGGCTATCACCGTATTTTTTATCGTCTGGAAGGGGAGAGTGCGGAAGACGGCAGCGTGATGACACTGCGCAGGTTTCTCGATAAAGACGGACATCCGAtt                                                                      >  2:65848/1‑143 (MQ=255)
                                                                                tCGGCCGCTGGAAGCGTGCTGGACGCCATGCACCGATGGCTATCACCGTATTTTTTATCGTCTGGAAGGGGAGAGTGCGGAAGACGGCAGCGTGATGACACTGCGCAGTTTTCTCGCTAAAGACGGACATCCGATTGATGTCg                                                               >  1:616254/1‑143 (MQ=255)
                                                                                   gCCGCTGGAAGCGTGCTGGACGCCATGCACCGATGGCTATCACCGTATTTTTTATCGTCTGGAAGGGGCGAGTGCGGAAGACGGCAGCGTGATGACACTGCGCAGTTTTCTCGATAAAGACGGACATCCGATTGATGTCGAgg                                                            >  2:369048/1‑143 (MQ=255)
                                                                                    cgccTGGAAGCGTGCTGGACGCCATGCACCGATGGCTATCACCGTATTTTTTATCGTCTGGAAGGGGAGAGTGCGGAAGACGGCAGCGTGATGACACTGCGCAGTTTTCTCGATAAAGACGGACATCCGATTGATGTCGAGGa                                                           <  2:144189/140‑1 (MQ=255)
                                                                                    ccGCTGGAAGCGTGCTGGACGCCATGCACCGATGGCTATCACCGTATTTTTTATCGTCTGGAAGGGGAGAGTGCGGAAGACGGCAGCGTGATGACACTGCGCAGTTTTCTCGATACAGAAGGACATGCGGTTGAGGTCGCggc                                                           >  2:1022101/1‑142 (MQ=255)
                                                                                      gCTGGAAGCGGGCTGGACGCCATGCACCGATGGCTATCACCGTATTTTTTATCGTCTGGAAGGGGAGAGTGCGGAAGACGGCAGCGTGATGACACTGCGCAGTTTTCTCGATAAAGACGGACATCCGATTGATGTCGAGGata                                                         <  1:801628/143‑1 (MQ=255)
                                                                                          gAAGCGTGCTGGGCGCCATGGACCGATGGCTATCACCGTATTTTTTATCGTCTGGAAGGGGAGAGTGCGGAAGACGGCAGCGTGATGACACTGCGCAGTTTTCTCGATAAAGACGGACATCCGATTGATGTCGAGGATATTaa                                                     <  1:1009268/143‑1 (MQ=255)
                                                                                          gAAGCGTGCTGGCCGCCATGCACCGCTGGCTAGCACCGTATTTTTTATCGTCTGGAAGGGGAGAGTGCGGAAGACGGCAGCGTGATGACACTGCGCAGTTTTCTCGATAAAGACGGACATCCGATTGATGTCGAGGATATTaa                                                     <  1:672926/143‑1 (MQ=255)
                                                                                           atgCGTGCTGGCCGCCCTGGACCGATGGCTATCGCCGTATTTTTTATCGTCTGGAAGGGGAGAGTGCGGAAGTCGGCAGCGTGATGACACTGCGCAGTTTTCTCGATAAAGACGCAAATCCGATGGATGTCGAGGATATTAAc                                                    <  2:981695/141‑1 (MQ=255)
                                                                                           atgCGGGCTGTGCGCCATGCACCGATGGCTATCACCGCATTTTTTATCGGCGGGAAGGGGAGGGTGCGGAAGACGGCGGCGTGATGACACTGCGCAGTTTTCTCGATAAAGACGGACATCCGATTGATGTCGAGGATATTAAc                                                    <  2:294269/141‑1 (MQ=255)
                                                                                           aggCGTGCTGTTCGCTGTTCGCCGCTTGCTATCACCGTATTTTTTATCGTCTGGAAGGGGAGAGTGCGGAAGACGGCAGCGTGATGACACTGCGCAGTTTTCTCGATAAAGACGGACATTCGATTGATGTCGAGGATATTAAc                                                    <  2:876027/141‑1 (MQ=255)
                                                                                             gCGTGCTGGACGCCATGCACCGATGGCTATCACCGTATTTTTTATCGTCTGGAAGGGGAGAGTGCGGAAGACGGCAGCGTGATGACACTGCGCAGTTTTCTCGATAAAGACGGACATCCGATTGATGTCGAGGATATTAACGa                                                  >  1:810982/1‑143 (MQ=255)
                                                                                                tGCTGGACGCCATGCACCGATGGCTATCACCGTATTTTTTATCGTCTGGAAGGGGAGAGTGCGGAAGACGGCAGCGTGATGACACTGCGCAGTTTTCTCGGTAAAGACGGACATCCGATTGATGTCGAGGATATTAACGATCa                                               <  1:874754/143‑1 (MQ=255)
                                                                                                   tGGACGCCATGCACCGATGGCTATCACCGTATTTTTTATCGTCTGGAAGGGGAGAGTGCGGAAGACGGCAGCGTGATGACACTGCGCAGTTTTCTCGATGAAGACGGACATCCGATTGATGTCGAGGATATTAACGATCAGGc                                            >  1:718840/1‑143 (MQ=255)
                                                                                                       cGCCATGCACCGATGGCTATCACCGTATTTTTTATCGTCTGGAAGGGGAGAGTGCGGAAGACGGCAGCGTGATGACACTGCGCAGTTTTCTCGATAAAGACGGACATCCGATGCATGTCGGGGATATTAACGCTCAGGCACGc                                        >  1:663677/1‑143 (MQ=255)
                                                                                                        gCCATGCACCGATGGCTATCACCGTATTTTTTATCGTCTGGAAGGGGAGAGTGCGGAAGACGGCAGCGTGATGCCACTGCGCAGTTTTCTCGATAAAGACGGACATCCGGTTGATGCCGAGGATATTACCGCTCAGGCCCGcc                                       >  2:347397/1‑143 (MQ=255)
                                                                                                           aTGCACCGATGGCTATCACCGTATTTTTTATCGTCTGGAAGGGGAGAGTGCGGAAGACGGCAGCGTGATGACACTGCGCAGTTTTCTCGATAAAGACGGACAGCCGATTGATGACGAGGATATTAACGATCAGGCACGCAATc                                    >  1:645708/1‑143 (MQ=255)
                                                                                                            tGCACCGATGGCTATCACCGTATTTTTTATCGTCTGGAAGGGGAGAGTGCGGAAGACGGCAGCGTGATGACACTGCGCAGTTTTCTCGATAAAGACGGACATCCGATTGATGTCGAGGATATTGACGATCAGGCACGCCATCt                                   >  2:563507/1‑143 (MQ=255)
                                                                                                                ccGATGGCTATCACCGTATTTTTTATCGTCTGGAAGGGGAGAGTGCGGAAGACGGCAGCGTGATGACACTGCGCAGTTTTCTCGATAAAGACGGACATCCGATTGGTGTCGAGGAGATTAAGGATCAGGCACGGCATCTGGTg                               >  1:139352/1‑143 (MQ=255)
                                                                                                                        tATCACCGTATTTTTTATCGTCTGGAAGGGGAGTGTGCGGTAGACGGACGCGTGATGCCCCTGCGCAGTTGTCTCGGTAAAGACGGACATCCGGTTGATGTCGAGGATATTAACGATCAGGGACGTTATCTCATGCGATTAAt                       >  2:324133/1‑143 (MQ=255)
                                                                                                                             ccGTATTTCGTATCGTCTGGAAGGGGAGAGTGCGGAAGACGGCAGCGTGATGACACTGCGCAGTTTTCTCGATAAAGACGCACATCCGATTGATGTCGAGGATATTAACGATCAGGCACGCCATCTGGTGCGTTTAATGCCgg                  <  2:1042892/143‑1 (MQ=255)
                                                                                                                               gTATTTTTTAGCGTCGGGGAGGGGAGAGTGCGGAAGACGGCAGCGTGATGACACTGCGCAGTTTTCTCGATAAAGACGGACATCCGATTGATGTCGAGGATATTAACGATCAGGCACGCCATCTGGTGCGTTTAATGCCGGtg                <  2:995950/143‑1 (MQ=255)
                                                                                                                                tATTTTTTATCGTCTGGAAGGGGAGAGTGCGGAAGACGGCAGCGTGATGACACTGCGCAGTTTTCTCGATAAAGACGGACATCCGATTGGTGTCGAGGATATTAACGCTCAGGCACGCCAACTGGTGAGTTTCATGCCGGtgg               >  2:904820/1‑142 (MQ=255)
                                                                                                                                          cggcTGGAAGGGGAGAGTGCGGAAGACGGCAGCGTGATGACACTGCGCAGTTTTCTCGATAAAGACGGACATCCGATTGATGTCGAGGATATTAACGATCAGGCACGCCATCTGGTGCGTTTAATGCCGGTGCTGCGCTTGCg     <  2:84502/140‑1 (MQ=255)
                                                                                                                                           gTCTGGAAGGGGAGAGTGCGGAAGACTGCAGCGTGATGACACTGCGCAGTTTTCTCGATAAAGACGGACATCCGATTGATGTCGAGGATATTAACGATCAGGCACGCCATCTGGTGCGTTTAATGCCGGTGCTGCGCTTGCGt    <  1:693572/143‑1 (MQ=255)
                                                                                                                                             cTGGTAGGGGTGAGTGCGGGAGGCGGCCGCGTGATGACACTGCGCAGTTTTCTCGATAAAGACGGACATCCTATTGATGTCGAGGATATTAACGATCAGGCACGCCATCTGGTGCGTTTAATGCCGGTGCTGCGCTTGCGTGa  <  2:1065473/143‑1 (MQ=255)
                                                                                                                                             |                                                                                                                                              
ATCAACGGGCGAGAACATCATCTGCATATTATTTTGACCTTCCGCGAATCGCTGCCAGGCCGACATCGGGTTCGCCGTTATCGGCCGCTGGAAGCGTGCTGGACGCCATGCACCGATGGCTATCACCGTATTTTTTATCGTCTGGAAGGGGAGAGTGCGGAAGACGGCAGCGTGATGACACTGCGCAGTTTTCTCGATAAAGACGGACATCCGATTGATGTCGAGGATATTAACGATCAGGCACGCCATCTGGTGCGTTTAATGCCGGTGCTGCGCTTGCGTGA  >  NC_000913/916671‑916954

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.