Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	NC_000913	1,978,503	Δ776 bp		insB1–insA	insB1, insA

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	1978503	1979278	776	75 [0]	[0] 76	insB1–insA	insB1,insA

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1978502	0 (0.000)	73 (1.250)	58/268	0.0	100%	intergenic (‑305/+16)	flhD/insB1	flagellar class II regulon transcriptional activator, with FlhC/IS1 transposase B
	?	NC_000913	1979279 =	0 (0.000)					intergenic (‑64/‑474)	insA/uspC	IS1 repressor TnpA/universal stress protein

GGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTATGC  >  NC_000913/1978362‑1978641                                                                                                                                             |                                                                                                                                            ggTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGta                                                                                                                                           <  1:1113529‑M1/143‑3 (MQ=255) ggTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGta                                                                                                                                           >  1:902021‑M1/1‑141 (MQ=255)    ctgttcacttatcTAAGATTGTTCCTAAATCGACGCAATTGGACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataa                                                                                                                                        <  2:941841‑M1/138‑6 (MQ=255)    cTTTACACTTATCTAAGATTTTGCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataa                                                                                                                                        <  2:942776‑M1/143‑6 (MQ=255)     tttACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCCCTACACGCACATACAACGGAGGGGGGCTGCGCTTTTCAATAATGCGAGAAGCAGATCACACAAAACACTCAATTACTTATCATAAATGtaaaag                                                                                                                                       >  2:542302‑M1/1‑137 (MQ=255)     tttACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataag                                                                                                                                       >  1:982174‑M1/1‑137 (MQ=255)        acacTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtca                                                                                                                                    <  2:575848‑M1/143‑10 (MQ=255)          acTCATCTAAGATTTTGCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcata                                                                                                                                  <  1:562580‑M1/143‑12 (MQ=255)           cTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatac                                                                                                                                 >  1:1032204‑M1/1‑131 (MQ=255)           cTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatac                                                                                                                                 >  1:773761‑M1/1‑131 (MQ=255)            ttATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGGGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataactcaaact                                                                                                                                >  2:721718‑M1/1‑130 (MQ=255)               tCTAATATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATGTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatactttt                                                                                                                             <  1:578160‑M1/143‑17 (MQ=255)                 tAATATTTTTCCTTAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgt                                                                                                                           <  1:1015102‑M1/143‑19 (MQ=255)                 tAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgt                                                                                                                           >  1:454470‑M1/1‑125 (MQ=255)                  aaGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgtt                                                                                                                          >  1:678303‑M1/1‑124 (MQ=255)                     atgtttcctAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttg                                                                                                                       <  2:625003‑M1/140‑23 (MQ=255)                     aTTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttg                                                                                                                       <  1:98764‑M1/143‑23 (MQ=255)                      tttttCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgg                                                                                                                      <  1:577479‑M1/143‑24 (MQ=255)                             tAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTCACATAAATGtataagtcatacttttgttttgggtgtatt                                                                                                               >  1:982714‑M1/1‑113 (MQ=255)                              aaaGCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtattt                                                                                                              <  1:126235‑M1/143‑32 (MQ=255)                                           tgccgtcgtcaCCACACGCACATACAACCGAGGGGGGCTGCGATTTTCAACAATGCGTGATGCACATCACACAAAATCCTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaa                                                                                                 <  1:514865‑M1/138‑45 (MQ=255)                                           tGTCCTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACGCAATTACTTAACATACATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaa                                                                                                 <  2:867926‑M1/143‑45 (MQ=255)                                           tGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGCTTTTCAATAATGCGTGATGCAGATGACACAAAACACTCAATTACTTAACATACATGtataagtcatacttgtgatttgggtgtatttcaatctggtaaaa                                                                                                 >  2:61234‑M1/1‑99 (MQ=255)                                                tCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagttt                                                                                            >  1:840653‑M1/1‑94 (MQ=255)                                                tCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatgtcaatcttttaaaaatttt                                                                                            >  2:798925‑M1/1‑94 (MQ=255)                                                tCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcataattttattttgggtgtatttcaatctgataaaaagttt                                                                                            >  2:492451‑M1/1‑94 (MQ=255)                                                 cGTCACTACACGCACATACGACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaatagtttt                                                                                           <  1:95694‑M1/143‑51 (MQ=255)                                                  gTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtattt                                                                                          >  2:356985‑M1/1‑92 (MQ=255)                                                      cTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtttatttcaagctgttaaaaagtttttcgct                                                                                      <  2:356222‑M1/143‑56 (MQ=255)                                                              acaTACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagc                                                                              <  1:1009574‑M1/143‑64 (MQ=255)                                                                    aaCGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACCCAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtctttcaatctgtacaaaaattgttcgctacgctagcaagaaa                                                                        >  2:608583‑M1/1‑74 (MQ=255)                                                                    aaCGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcacgcaa                                                                        >  1:440437‑M1/1‑74 (MQ=255)                                                                          ggggggCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatga                                                                  <  1:396444‑M1/143‑76 (MQ=255)                                                                            cgggcTGCGATTTTCAATACTGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgtgaaaaagtttttcgctacgctagcaagcaaaaatgaaa                                                                <  2:305494‑M1/142‑78 (MQ=255)                                                                              ggCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaaca                                                              >  1:711049‑M1/1‑64 (MQ=255)                                                                              ggCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaaca                                                              >  1:677974‑M1/1‑64 (MQ=255)                                                                                cTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacagg                                                            >  1:436237‑M1/1‑62 (MQ=255)                                                                                cTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgagtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcgaaaatgaaacagg                                                            >  2:666882‑M1/1‑62 (MQ=255)                                                                                 tGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacagga                                                           >  1:575418‑M1/1‑61 (MQ=255)                                                                                       tttCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaacgtgaaacaggactaacc                                                     >  1:335234‑M1/1‑55 (MQ=255)                                                                                       tttCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatc                                                     <  1:904416‑M1/143‑89 (MQ=255)                                                                                         tCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataagcga                                                   >  1:429814‑M1/1‑53 (MQ=255)                                                                                          cAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaa                                                  >  2:914467‑M1/1‑52 (MQ=255)                                                                                           aataatGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaa                                                 <  1:1011436‑M1/143‑93 (MQ=255)                                                                                            ataatGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagaaaaaatgaaacagggataatcgaaat                                                >  1:218423‑M1/1‑50 (MQ=255)                                                                                             taatGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaagaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatg                                               <  2:286785‑M1/143‑95 (MQ=255)                                                                                               atGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatggg                                             <  1:461984‑M1/143‑97 (MQ=255)                                                                                                tGCGTGATGTGGGTCAAACAAAACACTCAATTCCTTAACATAAAGGtataagtcatacttttgttgtgggtgtatttcaagctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatggga                                            <  2:509581‑M1/143‑98 (MQ=255)                                                                                                tGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatggga                                            <  2:466656‑M1/143‑98 (MQ=255)                                                                                                tGCGTGATGCAGATCACACAAAACACTCAATTACTTAACAAAAATGtataagtcatcctatgatgtgttttgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatggga                                            <  1:1112766‑M1/143‑98 (MQ=255)                                                                                                      aTGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgc                                      >  1:798955‑M1/1‑40 (MQ=255)                                                                                                         cAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgca                                   >  1:279150‑M1/1‑37 (MQ=255)                                                                                                         cAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgca                                   <  1:663190‑M1/143‑107 (MQ=255)                                                                                                           gATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcaca                                 <  1:983223‑M1/143‑109 (MQ=255)                                                                                                            aTCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcggacag                                >  2:399108‑M1/1‑34 (MQ=255)                                                                                                             tCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgtacagt                               >  1:988696‑M1/1‑33 (MQ=255)                                                                                                             tCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcaaagt                               >  2:686605‑M1/1‑33 (MQ=255)                                                                                                               acacaAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtca                             >  2:640734‑M1/1‑31 (MQ=255)                                                                                                               acacaAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtgtttcgctacgctagcaagcaaaactgaaacagcaatagtcgaaatggcatgttgcgcacagtca                             >  1:931845‑M1/1‑31 (MQ=255)                                                                                                                 acaAAACACTCAATTACTTAACATAAATGtataagtcatagttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaa                           <  1:498172‑M1/143‑115 (MQ=255)                                                                                                                 acaAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgggcacagtcaaa                           >  2:195878‑M1/1‑29 (MQ=255)                                                                                                                     aaCACTCTATTCCTTGATATAAATGtataattcatactttttttttgggtgtatttcaatctgttaaaacgtttttcgctacgctagcaatcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataa                       <  2:998921‑M1/143‑119 (MQ=255)                                                                                                                       cacTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataact                     <  2:564277‑M1/143‑121 (MQ=255)                                                                                                                          tCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcac                  >  1:444027‑M1/1‑20 (MQ=255)                                                                                                                          tCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcac                  <  2:576675‑M1/143‑124 (MQ=255)                                                                                                                            aaTTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccg                >  1:699218‑M1/1‑18 (MQ=255)                                                                                                                            aaTTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccg                <  1:313737‑M1/143‑126 (MQ=255)                                                                                                                             aTTACTTAACATAAATGtataagtcatacttttgttttgtgtgtatttcaatctgttaaaaagtttttctctacgctagcaagcaaaaatgaaacaggaataatcgaaatgagatgttgcgcatagtcacattaacttactgt               >  2:580461‑M1/1‑17 (MQ=255)                                                                                                                             aTTACTGAACATAAATGtataagtcatacttttggtttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgt               <  2:227305‑M1/143‑127 (MQ=255)                                                                                                                                aCTTAACATAAATGtataagtcagactgttgttttgggtgtatttcaatctgttaaaaagtttgtcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaa            <  1:542302‑M1/143‑130 (MQ=255)                                                                                                                                  ttAACTTAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaata          >  1:855131‑M1/1‑12 (MQ=255)                                                                                                                                  ttAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcatgcaaaaatgaaacagaaataatcgaaatgggatgttgcgcacagtcaaaataactctcggtaagta          >  2:1038598‑M1/1‑12 (MQ=255)                                                                                                                                    aaCATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttctctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataaatcaccgtaaataat        >  2:428563‑M1/1‑10 (MQ=255)                                                                                                                                       aTAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaatatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaatcatcct     >  2:673372‑M1/1‑7 (MQ=255)                                                                                                                                          aaTGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaataatcatctg  <  2:279253‑M1/143‑140 (MQ=255)                                                                                                                                             |                                                                                                                                            GGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTATGC  >  NC_000913/1978362‑1978641

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑