| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,020,961 | A→G | intergenic (‑42/‑177) | sulA ← / → sxy | SOS cell division inhibitor/CRP‑S‑dependent promoter expression factor |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,020,961 | 0 | A | G | 98.3% | 185.5 / NA | 59 | intergenic (‑42/‑177) | sulA/sxy | SOS cell division inhibitor/CRP‑S‑dependent promoter expression factor |
| Reads supporting (aligned to +/- strand): ref base A (1/0); new base G (33/25); total (34/25) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
AGCCCGGCTGTAGTGTTTTCCGTAGAGACACGCGCAATTTTACTTGCTGCGGATGAGAACGACGAAGAACGATGTGCATAGCCTGAAGTGTACATAATCAATCCAGCCCCTGTGAGTTACTGTATGGATGTACAGTACATCCAGTGACAACAAAGATCAACCCTATTTTCGGAAAGAGCCTCGCAAATTTTGTCGTTGGTGACGGGAAAACATAAATTAATCTTGCCCCTTAAGAATAAGTTGCCTATTTTCGTAGTTAACGGAT > NC_000913/1020825‑1021089 | aGCCCGGCTGTAGTGTTTTCCGTAGAGACACGCGCAATTTTACTTGCTGCGGATGAGAACGACGAAGAACGATGTGCATAGCCTGAAGTGTACATAATCAATCCAGCCCCTGTGAGTTACTGTATGGATGTACAGTGCATCCa > 2:487003/1‑143 (MQ=255) cccGGCTGTAGTGTTTTCCGTAGAGACACGCGCCATTTTACTTGCTGCGGATGAGAACGACGCAGAACGAGGTGCATCGCCTGAAGTGTACATAATCAATCCAGCCCCTGTGGGTTACCATCTGAATGTACGGTGCACCCAgc > 2:325682/1‑142 (MQ=255) ccGGCTGTAGTGTTTTCCGTAGAGACACGCGCAATTTTACTTGCTGCGGATGAGAACGACGAAGAACGATGTGCATAGCCTGAAGTGTACATAATCAATCCAGCCCCTGTGAGTTACTGTATGGATGTACAGTGCATCCGGTg > 2:936566/1‑143 (MQ=255) ccGGCTGTAGTGTTTTCCGTAGAGACACGCGCAATTTTACTTGCTGCGGATGAGAACGACGAAGAACGATGTGCATAGCCTGAAGTGTACATAATCAATCCAGCCCCTGTGAGTTACTGTATGGATGTACAGTGCATCCAGTg > 1:183463/1‑143 (MQ=255) cGGCTGTAGTGTTTTCCGTAGAGACACGCGCAATTTTACTTGCTGCGGATGAGAACGACGAAGAACGATGTGCATAGCCTGAAGTGTACATAATCAATCCAGCCCCTGTGAGTTACTGTATGGATGTACAGTGCATCCAGTGa < 2:758600/143‑1 (MQ=255) cGGCTGTAGGGTTTTCCGTAGAGACACGCGCAATTTTACTTGCTGCGGATGAGAACGACGAAGTAAGGAGTTCAAACCCTGATGTGTACATAATCAATCCAGCCCCTGTGAGTTACTGTATGGATGTACAGTGCATCCAGTGa < 1:258242/143‑1 (MQ=255) cTGTAGTGTTTTCCGTAGAGACACGCGCAATTTTACTTGCTGCGGATGAGAACGACGAAGAACGATGTGCATAGCCTGAAGTGTACATAATCAATCCAGCCCCTGTGAGTTACTGTATGGATGTACAGTGCATCCAGTGacaa > 2:1112360/1‑143 (MQ=255) ttggtTTTCCTTAGAGACACGCGCAATTTTACTTGCGGCGTATGATAACGACGAAGAACGATGTGCAGAGCCTGAAGTATACATAAGCAATCCAGCCCCTGTGAGTTATTGTATGGATGTACAGTGCATCCAGAGACAACaaa < 2:461383/140‑1 (MQ=255) gtTTGCCGTAGAGACACGCGCAATTTTACTTGCTGCGGATGAGAACGACGAAGAACGATGTGCATAGCCTGAAGTGTACATAATCAATCCAGCCCCTGTGAGTTACTGTATGGATGTACAGTGCATCCAGTGACAACAAAGAt < 1:279803/143‑1 (MQ=255) ttgtCCGTAGAGACACGCGCAATTTTACTTGCTGCGGATGAGCACGACGAAGAACGATGTGCATAGCCTGACGTGTACATAATCAATCCAGCCCCTGTGACGTACTGTGTGGCTGTACAGTGCACCCCGTTGCAACAAAGATc > 2:750597/4‑143 (MQ=255) ttCCGTAGAGACACGCGCAATCTTACTTGCTGCGGATGAGAACGACGAAGAACGATGTGCATAGCCTGAAGTGTACATAATCAATCCAGCCCCTGTGAGTTACTGTATGGATGTACAGTGCATCCAGTGACAACAAAGATCaa < 1:692909/143‑1 (MQ=255) tCCGTAGAGACACGCGCAATTTTACTTGCTGCGGATGAGAACGACGAAGAACGATGTGCATAGCCTGAAGTGTACATAATCAATCCAGCCCCTGTGAGTTACTGTATGGATGTACAGTGCATCCAGTGACAACAAAGATCAAc < 1:373854/143‑1 (MQ=255) tCCGTAGAGACACGCGCAATTTTACTTGCTGCGGATGAGAACGACGAAGAACGATGTGCATAGCCTGAAGTGTACATAATCAATCCAGCCCCTGTGAGCTACTGTATGGATGTACAGTGCATCCAGTGACAACAAAGATCAAc > 2:890849/1‑143 (MQ=255) ccGTAGAGACACGCGCAACTTTACTTGCTGCGGATGAGAACGACGAAGAACGATGTGCATAGCCTGAAGTGTACATAATCAATCCAGCCCCTGTGAGTTACTGTATCGATGTACAGTGCATCCAGTGACAACAAAGATCAAcc < 1:721246/143‑1 (MQ=255) gTAGAGACACGCGCAATTTTACTTGCTGCGGATGAGAACGACGAAGAACGATGTGCATAGCCTGAAGTGTACATAATCAATCCAGCCCCTGTGCGTTACTGTATGGATGTACAGTGCAACCAGTGACAACAAAGATCAACCCt > 2:53563/1‑143 (MQ=255) gTAGAGACACGCGCAATTTTACTTGCTGCGGATGAGAACGACGAAGAACGATGTGCATAGCCTGAAGTGTACATAATCAATCCAGCCCCTGTGAGTTACTGTATGGATGTACAGTGCATCCAGTGACACCAAAGATCAACCCt > 1:440058/1‑143 (MQ=255) gTAGAGACACGCGCAATTTTACTTGCTGCGGATGAGAACGACGAAGAACGATGTGCATAGACTGAAGTGTACATAATCAATCCAGCCCCTGTGAGTTACTGTATGGCTGTACAGTGCATCACGTGACAACACAGATCAACCCt > 2:941737/1‑143 (MQ=255) acacGCGCAAGTTTACTTGCTGCGGATGAGAACGACGAAGAACGATGTGCATAGCCTGAAGTGTACATAATCAATCCAGCCCCTGTGAGTTACTGTATGGATGTACAGTGCATCCAGTGACAACAAAGATCAACCCTATTTTc < 1:519488/143‑1 (MQ=255) cacGCGCCATTTTACTTGCTGCGGATGAGAACGACGAAGAACGATGTGCATAGCCTGAAGTGTACATAATCAATCCAGCCCCTGTGAGTTACTGTATGGATGTACAGTGCATCCAGTGACAACAAAGATCAACCCTATTTTCg < 2:619884/143‑1 (MQ=255) tagttttACTTGCTGCGGATGGGAACGACGAAGAACGATGTGCATAGCCTGAAGTGTACATAATCAATCCAGCCCGTGTGAGTTACTGTATGGATGTACAGTGCATCCAGTGACAACAAAGATCAACCCTATTTTCGGAAaga < 2:469951/140‑1 (MQ=255) gaaTTTTACTTGTGGCGGCTGAGAACGACGAAGAACGATGTGCATAGCCTGAAGTGTACATAATCAATCCAGCCACTGTGAGTTACTGTATGGATGTACAGTGCATCCAGTGACAACAAAGATCAACCCTATTTTCGGAAaga < 2:260083/142‑1 (MQ=255) aaTTTTACTTGCTGCGGATGAGAACGACGAAGAACGATGTGCATAGCGTGCAGGGTACATAGTCAATACAGACCCTGTGAGTTACTGTATGGATGTACAATACATCCAGTGAACACAACTATCAACCCTCTTCTCGCAAcgag > 2:1050961/1‑143 (MQ=255) tttACTTGCTGCGGATGAGAACGACGAAGAACGATGTGCATAGCCTGAAGTGTACATAATCAATCCAGCCCCTGTGAGTTACTGTATGGATGTACAGTGCATCCAGTGACAACAAAGATCAACCCTATTTTCGGAAAGAGCCt < 2:628578/143‑1 (MQ=255) ttGCTGCGGATGAGAACGACGAAGAACGATGTGCATAGCCTGAAGTGTACATAATCAATCCAGCCCCTGTGAGTTACTGTATGGATGTACAGTGCATCCAGTGACGACAAAGATCAACCCTATTTTCGGAAAGAGCCTCGCaa > 2:768944/1‑143 (MQ=255) ttGCTGCGGATGAGAACGACGAAGAACGATGTGCATAGCCTGAAGTGTACATAATCAATCCAGCCCCTGTGAGTTACTGTATGGATGTACAGCGCATCCAGTGCCAACAAAGATCAACCCTATTTTCGGACAGAGCCTCGCaa > 2:773252/1‑143 (MQ=255) gtgatgcGGATGAGAACGACGAAAAACAATGGGCATAGCCTGAAGTGTACATAATCAATACAGCTCCTGTGAGTTACTGTATGGATGAACAGAGCATCCAGAGAGAAAAAAGATCAACACTATTTTCGGAAAGAGCCTCGCaa > 2:614068/5‑143 (MQ=255) tgcGGATGAGAACGACGAAGAACGATGTGCATAGCCTGAAGTGTACATAATCAATCCAGCCCCTGTGAGTTACTGTATGGATGTACAGTGCATCCAGTGACAACAAAGATCAACCCTATTTTCGGAAAGAGCCTCGCAAAttt > 1:1083065/1‑143 (MQ=255) gcGGATGAGAACGACGAAGAACGATGTGCATAGCCTGAAGTGTACATAATCAATCCAGCCCCTGTGAGTTACTGTATGGATGTACAGTGCATCCAGTGACAACAAAGATCAACCCTATTTTCGGAAAGAGCCTCGCAAAtttt > 1:706321/1‑143 (MQ=255) gATGAGAACGACGAAGGACGATGTGCATAGCCTGAAGTGTACATAATCAATCCAGCCCCTGTGAGTTACTGTATGGATGTACAGTGCATCCAGTGACAACAAAGATCAACCCTATTTTCGGAAAGAGCCTCGCAAATTTTGTc < 2:43301/143‑1 (MQ=255) agaACGACGAAGAACGATGTGCATAGCCTGAAGGGTACATAATCAAGCCAGCCCCTGTGAGTTACTGTATGGATGTACAGTGCATCCAGTGACAACAAAGATCAACCCTATTTTCGGAAAGAGCCTCGCAAATTTTGTCGTTg < 1:11718/143‑1 (MQ=255) cgacgaAGAACGATGTGCATAGCCTGAAGTGTACATAATCAATCCAGCCCCTGTGAGTTACTGTATGGATGTACAGTGCATCCAGTGACAACAAAGATCAACCCTATTTCAGGAAAGAGCCTCGCCACTACTGGCCTTGGTGa > 2:782651/1‑143 (MQ=255) acgaAGAACGATGTGCATAGCCTGAAGTGTACATAATCAATCCAGCCCCTGTGAGTTACTGTATGGATGTACAGTGCATCCAGTGACAACAAAGATCAACCCTATTTTCGGAAAGAGCCTCGCAAATTTTGTCGTTGGTGACg > 1:985557/1‑143 (MQ=255) acgaAGAACGATGTGCATAGCCTGAAGTGTACATAATCAATCCAGCCCCTGTGAGTTACTGTATGGATGTACAGTGCATCCAGTGACAACAAAGATCAACCCTATTTTCGGAAAGAGCCTCGCAAATTTTGTCGTTGGTGACg > 1:771159/1‑143 (MQ=255) gaaCGATGTGCATAGCCTGAAGTGTACATAATCAATCCAGCCCCTGTGAGTTACTGTATGGATGTACAGTGCATCCAGTGACAACAAAGATCAACCCTATTTTCGGAAAGAGCCTCGCAAATTTTGTCGTTGGTGACGGGaaa > 2:26129/1‑143 (MQ=255) gaaCGATGTGCATAGCCTGAAGTGTACATAATCAATCCAGCCCCTGTGAGTTACTGTATGGATGTACAGTGCATCCAGTGACAACAAAGATCAACCCTATTTTCGGAAAGAGCCTCGCAAAATTTGTCATTGGGGACGGGaaa > 2:874032/1‑143 (MQ=255) ccGATGTGCATAGCCTGAAGTGTACATAAACAATCCCGCCCGTTTGAGTTACTGTATGGATGTACAGTGCATCCAGTGACAACAAAGATCAACCCTATTTTCGGAAAGAGCCTCGCAAATTTTGTCGTTGGTGACGGGAAAAc < 1:1056232/142‑1 (MQ=255) gATGTGCATAGCCTGAAGTGTACATAATCAATCCAGCCCCTGTGAGTTACTGTATGGATGTACAGTGCATCCAGTGACAACAAAGATCAACCCTATTTTCGGAAAGAGCCTCGCAAATTTTGTCGTTGGTGACGGGAAAACAt < 1:1016211/143‑1 (MQ=255) gATGCGCATAGCCTGAAGTGTACAGAATCAATCCAGCCCCTGTGAGTTACTGTATGGATGTACAGTGCATCCAGTGACGACAAAGATCAACCCTATTTTCGGAAAGAGCCTCGCAAATTTTGTCGTTGGTGACGGGAAAACAt < 1:382736/143‑1 (MQ=255) gtgCATAGCCTGAAGTGTACATAATCAATCCAGCCCCTCTGAGTTACTGTATGGATGTACAGTGCATCCAGTGACAACAAAGATCAACCCTATTTTCGGAAAGAGCCTCGCAAATTTTGTCGTTGGTGACGGGAAAACATaaa < 1:601644/143‑1 (MQ=255) gCATAGCCTGAAGTGTACATAATCAATCCAGCCCCTGTGAGTTACTGTATGGATGTACAGTGCATCCAGTGACAACAAAGATCAACCCTATTTTCGGAAAGAGCCTCGCAAATTTTGTCGTTGGTGACGGGAAAACATAAAtt > 2:1874/1‑143 (MQ=255) gCATAGCCTGAAGTGTACATAATCAATCCAGCCCCTGTGAGTTACTGTATGGATGTACAGTGCATCCAGTGACAACAAAGATCAACCCTATTTTCGGAAAGAGCCTCGCAAATTTTGTCGAAGGGGACGGGGAAACGTAACtt > 1:148317/1‑143 (MQ=255) cATAGCCTGAAGTGTACATAATCAATCCAGCCCCTGTGAGTTACTGTATGGATGTACAGTGCATCCAGTGACAACAAAGATCAACCCTATTTTCGGAAAGAGCCTCGCAAATTTTGTCGTTGGTGACGGGAAAACATAAATTa > 1:161828/1‑143 (MQ=255) aGCCTGAAGTGTACATAATCAATCCAGCCCCTGTGAGGTACTGTATGGATGGACAGTGCATCCAGTGACTACAAAGATCAACCCTATTTTCGGAAAGAGCCTCGCAAATTTTGTCGTTGGTGACGGGAAAACATAAATTAATc < 1:317450/143‑1 (MQ=255) aGCCTGAACTGTATATAATCAATCCAGCCCCTGTGAGTTACTGTATGGATGTACAGTGCATCCAGTGACAACAAAGATCAACCCTATTTTCGGAAAGAGCCTCGCAAATTTTGTCGTTGGTGACGGGAAAACATAAATTAATc < 1:970353/143‑1 (MQ=255) ccTGAAGTGTACATAATCAATCCAGCCCCTGTGAGTTACTGTATGGATGTACAGTGCATCCAGTGACAACAAAGATCAACCCTATTTTCGGAAAGAGCCTCGCAAATTTTGTCGTTGGTGACGGGAAAACATACATTAATCtt > 2:517991/1‑143 (MQ=255) cATAATCAATCCAGCCCCTGTGAGTTACTGTCTGGATGTACAGTGCACCCCCTCACAACAAAGATCAAACCTATCTTCTGAAAGAGCCTCGCAAATTTTGTCGTTGCTGACGCGAAAACATAAATTAATCTTGCCCCTTAAGa > 2:909559/1‑143 (MQ=255) tAATCAATCCAGCCCCTGTGAGTTACTGTATGGATGTACAGTGCATCCAGTGACAACAAAGATCAACCCTATTTTCGGAAAGAGCCTCGCAAATTTTGTCGTTGGTGACGGGAAAACATAAATTAATCTTGCCCCTTCAGact > 2:856728/1‑141 (MQ=255) atcactcCAGTCCCTGCGAGTTACTGTATGGATGTACAGTGCATCCAGTGACAACAAAGATCAACCCTATTTTCGGAAAGAGCCTCGCAAATTTTGTCGTTGGTGACGGGAAAACATAAATTAATCTTGCCCCTTAAGAATaa < 1:41122/143‑1 (MQ=255) atcaatcCAGCCCCTGTGAGTTACTGTATGGATGTACAGTGCATCCAGTGACAAAAAAGATCAACCCTATTTTCGGAAAGAGCCTCGCCAATTTTGTCGTTGTTGACGGGCACACATAAATTCATCTTGCCCCTTCAGAATag > 1:911745/1‑142 (MQ=255) aatcCAGCCCCTGTGAGTTACTGTATGGATGTACAGTGCATCCAGTGACAACAAAGATCAACCCTATTTTCGGAAAGAGCCTCGCAAATTTTGTCGTTGGTGACGGGAAAACATAAATTAATCTTGCCCCTTAAGAATAAGtt < 1:174745/143‑1 (MQ=255) tcCAGCCCCTGTGAGTTACTGTATGGATGTACAGTGCATCCAGTGACAACAAAGATCAACCCTATTTTCGGAAAGAGCCTCGCAAATTTTGTCGTTGGTGACGGGCATACATAATTTAATCTTGCCCCTTAAGAATAAGTTGc > 1:203964/1‑143 (MQ=255) cAGCCCCTGTGAGTTACTGTATGGATGTACAGTGCATCCAGTGACAACAAAGATCAACCCTATTTTCGGAAAGAGCCTCGCAAATTTTGTCGTTGGTGACGGGAAAACATAAATTAATCTTGCCCCTTAAGAATAAGTTGCCt > 1:321029/1‑143 (MQ=255) ccccTGTGAGTTACTGTATGGATGTACAGTGCATCCAGTGACAACAAAGATCAACCCTATTTTCGGAAAGAGCCTCGCAAATTTTGTCGTTGGTGACGGGAAAACATCAATTAATCTTGCCCCTTAAGAATAACTTGACTAtt > 2:40558/1‑143 (MQ=255) ggcgAGTTACTGTATGGATGTACAGTGCATCCAGTGACAACAAAGATCAACCCTATTTTCGGAAAGAGCCTCGCAAATTTTGTCGTTGGTGACGGGAAAACATAAATTAATCTTGCCCCTTAAGAATAAGTTGCCTATTTTCg < 1:1026237/140‑1 (MQ=255) aCTGTATGGATGTACAGTGCCCCCAGTGACAACAAAGATCAACCCTATTTTCGGAAAGAGCCTCGCAAATTTTGTCGTTGGTGACGGGAAAACATAAATTAATCTTGCCCCTTAAGAATAAGTTGCCTATTTTCGTAGTTAAc < 1:865556/143‑1 (MQ=255) aCTGTATGGATGTACAGTGCATCCAGTGACAACAAAGATCAACCCTATTTTCGGAAAGAGCCTCGCAAATTTTGTCGTTGGTGACGGGAAAACATAAATTAATCTTGCCCCTTAAGAATAAGTTGCCTATTTTCGTAGTTAAc > 1:150742/1‑143 (MQ=255) cTGTATGGATGTACAGTGCATCCAGTGACAACAAAGATCAACCCTATTTTCGGAAAGAGCCTCGCAAATTTTGTCGTTGGTGACGGGAAAACATAAATTAATCTTGCCCCTTAAGAATAAGTTGCCTATTTTCGTAGTTAACg > 2:705041/1‑143 (MQ=255) tGTATGGATGTACAGTGCATCCAGTGACAACAAAGATCAACCCTATTTTCGGAAAGAGCCTCGCAAATTTTGTCGTTGGTGACGGGAAAACATAAATTAATCTTGCCCCTTAAGAATAAGTTGCCTATTTTCGTAGTTGACgg > 1:972525/1‑143 (MQ=255) tagggATGTACAGTGCATCCAGTGACAACAAAGATCAACCCTATTTTCGGAAAGAGCCTCGCAAATTTGGTCGTTGGTGACGGGAAAACATAAATTAATCTTGCCCCTTAAGAATAAGTTGCCTATTTTCGTAGTTAACGGAt < 2:604076/140‑1 (MQ=255) | AGCCCGGCTGTAGTGTTTTCCGTAGAGACACGCGCAATTTTACTTGCTGCGGATGAGAACGACGAAGAACGATGTGCATAGCCTGAAGTGTACATAATCAATCCAGCCCCTGTGAGTTACTGTATGGATGTACAGTACATCCAGTGACAACAAAGATCAACCCTATTTTCGGAAAGAGCCTCGCAAATTTTGTCGTTGGTGACGGGAAAACATAAATTAATCTTGCCCCTTAAGAATAAGTTGCCTATTTTCGTAGTTAACGGAT > NC_000913/1020825‑1021089 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |