| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 2,415,466 | Δ1 bp | coding (720/2145 nt) | pta → | phosphate acetyltransferase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,415,466 | 0 | T | . | 97.8% | 195.0 / ‑1.6 | 47 | coding (720/2145 nt) | pta | phosphate acetyltransferase |
| Reads supporting (aligned to +/- strand): ref base T (0/0); major base . (20/25); minor base C (0/1); total (20/27) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
CTCTTCCAAAGCTAAAGTAAACAATGTTGATCCGGCGAAGCTGCAAGAATCCAGCCCGCTGCCGGTTCT‑CGGCGCTGTGCCGTGGAGCTTTGACCTGATCGCGACTCGTGCGATCGATATGGCTCGCCACCTGAATGCGACCATCATCAACGAAGGCGACATCAATACTCGCCGCGTTAAATCCGTCACTTTCTGCGCACGCAGCATTCCGCACATGCTGGAGCACTTCCGTGCCGGTTCTCTGCTGGTGACTTCCGCAGACCGTCCTGACGT > NC_000913/2415331‑2415603 | ctctTCCGCAGCTACAGTACACAATGTTGATCCGGCGCAGCTGCAAGAGTCCAGCCCGCTGCCGGTTCT‑CGGCGCTGTGCCGTGGAGCTTTGACCTGATCGCGACTCGTGCGATCGATATGGCTCGCCACCTGAA‑GCGACcat < 1:679521/143‑1 (MQ=255)ctctTCCAAAGCTAAAGTAAACAATGTTGATCCGGCGAAGCTGCAAGAATCCAGCCCGCTGCCCCTTCT‑CGGCGCTGTGCCGTGGAGCTTTGACCTGATCGCGACTCGTGCGATCGATATGGCTCGCCACCTGAA‑GCGACcat < 1:466528/143‑1 (MQ=255) tCCAAAGCTAAAGTAAACAATGTTGATCCGGCGAAGCTGCAAGAATCCAGCCCGCTGCCGGTTCT‑CGGCGCTGTGCCGTGGAGCTTTGACCTGATCGCGACTCGTGCGATCGATATGGCTCGCCACCTGAA‑GCGACCaccatc > 1:911475/1‑143 (MQ=255) aaaGCTAAAGTAAACAATGTTGATCCGGCGAAGCTGCAAGAATCCAGCCCGCTGCCGGTTCT‑CGGCGCTGTGCCGTGGAGCTTTGACCTGATCGCGACTCGTGCGATCGATATGGCTCGCCACCTGAA‑GCGACCATGATCAAc > 1:464564/1‑143 (MQ=255) aaaGCTAAAGTAAACAATGTTGATCCGGCGAAGCTGCAAGAATCCAGCCCGCTGCCGGTTCT‑CGGCGCTGTGCCGTGGAGCTTTGACCTGATCGCGACTCGTGCGATCGATATGGCTCGCCACCTGAA‑GCGACCATCATCAAc > 1:762917/1‑143 (MQ=255) aaaGCTAAAGTAAACAATGTTGATCCGGCGAAGCTGCAAGAATCCAGCACCCT‑TGATTTCTGCTGCGCTGTGCCGTGGAGCTTTGACCTGATCGCGACTCGTGCGATCGATATGGCTCGCCACCTGAA‑GCGACCATCATCAAc < 1:208778/143‑1 (MQ=255) aGTAAACAATGTTGATCCGGCGAAGCTGCAAGAATCCAGCCCGCTGCCGGTTCT‑CGGCGCTGTGCCGTGGAGCTTTGACCTGATCGCGACTCGTGCGATCGATATGGCTCGCCACCTGAA‑GCGACCATCATCAACGAAGGCGa > 1:640851/1‑143 (MQ=255) aaCAATGTTGATCCGGCGAAGCTGCAAGAATCCAGCCCGCTGCCGGTTCT‑CGGCGCTGTGCCGTGGAGCTTTGACCTGATCGCGACTCGTGCGATCGATATGGCTCGCCACCTGAA‑GCGACCATCATCAACGAAGGCGACATc > 1:329472/1‑143 (MQ=255) tgctCCGGCGAAGCTGCAAGCTTCCGGCCCGCTGCCGGTTCT‑CGGCGCTGTGCCGTGGAGCTTTGACCTGATCGCGCCTCGTGCGATCGATATGGCTCGCCACCTGAA‑GCGACCATCATCAACGAAGGCGACATCAATACTcg < 2:465355/140‑1 (MQ=255) tGATTCGGTGAAGCTGCAACAATCAAGCCGGCGGCCGGTTCT‑CGGCGCTGTGCCGTGGAGCTTTGACCTGATCGCGACTCGTGCGATCGATATGGCTCGCCACCTGAA‑GCGACCATCATCAACGAAGGCGACATCAATACTcg < 1:333673/143‑1 (MQ=255) ggcgccgctgctGGACTCCAGCCGGCTGCCGGTCCG‑CGGCGCTGTGCCGTGGAGCTTTGACCTGATCGCGACTCGTGCGATCGATATGGCTCGCCACCTGAA‑GCGACCATCATCAACGAAGGCGACATCAATACTCGCCGCGt < 2:460346/137‑1 (MQ=255) cctcAAGATTCCATCCCCCTGCCTGTACT‑CGGCTGTGTGCCGCGGAGCTTTGACCTGATCCCGACTCGTGCGATCGATATGGCACACCACCTGAA‑GCGACTATTATCAACGAAGGCGACATCAATACTCGCCGCGTTAAATcc < 2:131193/140‑1 (MQ=255) tGCAAGAATCCAGCCCGCTGCCGGTTCT‑CGGCGCTGTGCCGTGGAGCTTTGACCTGATCGCGACTCGTGCGATCGATATGGCTCGCCACCTGAA‑GCGACCATCATCCACGAAGGCGCCATCAATACTCGCCGCGTTAAATCCg > 1:322608/1‑143 (MQ=255) cAAGAATCCAGCCCGCTGCCGGTTCT‑CGGCGCTGTGCCGTGGAGCTTTGACCTGATCGCGACTCGTGCGATCGATATGGCTCGCCACCTGCA‑CCGACCATCATCAACGAAGGCGACATCACTACTCGCCGCGTTAAATCCGTc > 2:761142/1‑143 (MQ=255) aagaagCCAGCCCGCTGCCGGTTCT‑CGGGGCTGTGCCGTGGAGCGTTGACCTGATCGCGACTCGTGCGATCGATAGGGCTCGCCACCTGAA‑GCGACCATCATCAACGAAGGCGACATCAAGACGCGCCGCGTTAAATCCGTCa < 2:161184/143‑1 (MQ=255) ccAGCCCGCCGCCGGTTCT‑CGGCGCTGGGCCGTGGACCTTTGACCTGATCGCGACGCGTGCGAGCGATATTGCGCGCCACCTGAA‑GCGACCATCATGAACGAAGGCGACATCAATACTCGCCGCGTTAAATCCGTCACTTTCt < 1:415078/143‑1 (MQ=255) aGCCCGCGGCCGGTTCG‑CGGCGCTGTGCCGTGGAGCTTTGACCTGATCGCGACTCGTGCGATCGATATGGCTCGCCACCTGAA‑GCGACCATCATCAACGAAGGCGACATCAATACTCGCCGCGTTAAATCCGTCACTTTCTgc < 1:154259/143‑1 (MQ=255) cccGCTGCCGGTTCT‑CGGCGCTGTGCCGTGGAGCTTTGACCTGATCGCGACTCGTGCGATCGATATGGCTCGCCACCTGAA‑GCGACCATCATCAACGACGGCGACATCAATACTCGCCGCGTTAAATCCGTCACTTTCTgcgc > 1:718651/1‑143 (MQ=255) cccGCTGCCGGTTCT‑CGGCGCTGTGCCGTGGAGCTTTGACCTGATCGCGACTCGTGCGATCGATATGGCTCGCCACCTGAA‑GCGACCATCATCAACGAAGGCGACATCAATACTCGCCGCGTTAAATCCGTCACTGTCTgggc > 1:525561/1‑143 (MQ=255) cccGCTGCCGGTTCT‑CGGCGCTGTGCCGTGGAGCTTTGACCTGATCGCGACTCGTGCGATCGATATGGCTCGCCACCTGAA‑GCGACCACCATCAACGAAGGCGACATCAATACTCGCCGCGTTAAATCCGTCACTTTCTgcgc < 1:879508/143‑1 (MQ=255) gcccGGGTCT‑CGGCGCTGTGGCGTGGGGCTTTGACGTGATCGCGACTCGTGCGATCGATATGGCTCGCCACCTGAA‑GCGACCATCATCAACGAAGGCGACATCAATACTCGCCGCGTTAAATCCGTCACTTTCTGcgcacgca < 1:516170/141‑1 (MQ=255) t‑cGGCGCTGCGCCGTGGAGCTTGGACCTGATCGCGACTCGTGCGATCGATATGGCTCGCCACCTGAA‑GCGACCATCATCAACGAAGGCGACATCAATACTCGCCGCGTTAAATCCGTCACTTTCTGCGCACGCAGCATTCCGc < 1:511339/143‑1 (MQ=255) ggCGCCGCGCCGTTGAGCTTTGACCTGATCGCGCCTCGTGCGATCGAGATGGCTTGCCACCTGAA‑GCGACCATCATCAACGAAGGCGACATCAATACTCGCCGCGTTAAATCCGTCACTTTCTGCGCACGCAGCATTCCGcac < 2:318813/143‑1 (MQ=255) cTGTGGCGTGGAGCTTTGACCTGAGCGCGACTCGTGCGAGCGATATGGCTCGCCACCTGAA‑GCGACCATCATCAACGAAGGCGACATCAATACTCGCCGCGTTAAATCCGTCACTTTCTGCGCACGCAGCATTCCGCACATGc < 1:397471/143‑1 (MQ=255) tgCCGTGGAGCTTTGACCTGATCGCGACTCGTGCGATCGATATGGCTCGCCACCTGAA‑GCGACCATCATCAACGAAGGCGACATCAATACTCGCCGCGTTAAATCCGTCACTTTCTGCGCACGCAGCATTCCGCACATGCTgg < 1:692566/143‑1 (MQ=255) gCCGCGGCGCTTTGACCTGATCGCGACTCGTGCGATCGATATGGCTCGCCACCTGCA‑GCGACCATCATCAACGAAGGCGACATCAATACTCGCCGCGTTAAATCCGTCACTTTCTGCGCACGCAGCATTCCGCACATGCTGGa < 2:718597/143‑1 (MQ=255) tttaCCTGCTTGCGGCTCGTGCGATCGATATGGCTCGCCACCTG‑AGGCGACCATCATCAACGAAGGCGACATCAATACTCGCCGCGTTAAAGCCGTCACTTTCTGCGCACGCAGCAGTCCGCACATGCTGGAGCACTTCCGTg < 2:20190/140‑1 (MQ=255) tGATCGCGACTCGTGCGATCGATATGGCTCGCCACCTGAA‑GCGACCATCATCAACGAAGGCGACATCAATACTCGCCGCGTTAAATCCGTCACTTTCTGCGCACGCAGCATTCCGCACATGCTGGAGCACTTCCGTGCCGGtt > 1:809166/1‑143 (MQ=255) gATCGCGACTCGTGCGATCGATATGGCTCGCCACCTGAA‑GCGACCATCATCAACGAAGGTGACATCAATACTCGCCGCGGTAAATCCGTCACTTTCTGCGCACGCAGCATTCCGCCCATGCTGGAGCACTCCCGTCCCGGCtc > 2:793336/1‑143 (MQ=255) aTCGCGACTCGTGCGATCGATATGGCTCGCCACCTGAA‑GCGACCATCATCAACGAAGGCGACATCAATACTCGCCGCGTTAAATCCGTCACTTTCTGCGCACGCAGCATTCCGCACATGCTGGAGCACTTCCGTGCCGGTtct < 1:36546/143‑1 (MQ=255) tCGCGACTCGTGCGATCGATATGGCTCGCCACCTGAA‑GCGACCATCATCAACGAAGGCGACATCAATACTCGCCGCGTTAAATCCGTCACTTTCTGCGCACGCAGCATTCCGCACATGCTGGAGCACTTCCGTGCCGGTtctc > 1:561891/1‑143 (MQ=255) cgACTCGAGCGAACGATATGGCGCGCCACCTGTA‑GCGACCATCATCAACGAGGTCGACATCAATACTCGCCGCGTTAAATCCGTCACTTTCTGCCCACGCAGCATTCCGCACATGCTGGAGCACTTCCGTGCCGGTTCTctgc < 1:146901/143‑1 (MQ=255) caCTCGTGCGATCGATATGGCTCCCCACCTGAA‑GCGACCATCATCAACGAAGGCGACATCAATACTCGCCGCGTTAAATCCGTCACTTTCTGCGCACGCAGCATTCCGCACATGCTGGAGCACTTCCGTGCCGGTTCTctgct < 1:484730/142‑1 (MQ=255) tCGTGCGATCGATATGGCTCGCCACCTG‑ACGCGACCATCATCAAGGAAGGCGACATCAATACGCGCCGCGTTAAAGCCGTCACTTTCTGCGCACGCAGCATTCCGCACATGCTGGAGCACTTCCGTGCCGGTTCTCTGCTGGt < 2:342824/143‑1 (MQ=255) gTGCGATCGATATGGCTCGCCACCTGAA‑GCGACCATCATCAACGAAGGCGACATCAATACTCGCCGCGTTAAATCCGTCACTTTCTGCGCACGCAGCATTCCGCACATGCTGGAGCACTTCCGTGCCGGTTCTCTGCTGGTGa < 2:206044/143‑1 (MQ=255) gTGCGATCGATATGGCTCGCCACCTGAA‑GCGACCATCATCAACGAAGGCGACATCAATACTCGCCGCGGTAAATCCGTCACTTTCTGCGCACGCAGCATTCCGCACATGCTGGAGACCTTCCGTGCCGCTTACCTGCTGGTGa > 2:27938/1‑143 (MQ=255) tGCGATCGATATGGCTCGCCACCTGAA‑GCGACCATCATCAACGAAGGCGACATCCATACTCGCCGCGGTAAATACGTCACTTTCTGCGCACGCAGCATTCCGCACATGCTGGAGCACTTCCGTGCCGGATCTCTGCTGGGGAc > 2:260064/1‑143 (MQ=255) tGCGATCGATATGGCTCGCCACCTGAA‑GCGACCATCATCAACGAAGGCGACATCAATACTCGCCGCGTTAAATCCGTCACTTTCTGCGCACGCAGCATTCCGCACATGCTGGAGCACTTCCGTGCCGGTTCTCTGCTGGTGAc < 1:369109/143‑1 (MQ=255) cgatcgatATGGCTCGCCACCTGAA‑GCGACCATCATCAACGAAGGCGACATCAATACTAGCCGCGGTAAATCCGTCACTTTCTGCGCACGCAGCATTCCGCACATGCTGGAGCACTTCCGTGCCGGTTGTCTGCTGGTGGCtt > 1:344647/1‑143 (MQ=255) gatcgatATGGCTCGCCACCTGAA‑GCGACCATCATCAACGAAGGCGACATCAATACTCGCCGCGTTAAATCCGTCACTTTCTGCGCACGCAGCATTCCGCACATGCTGGAGCACTTCCGTGCCGGTTCTCTGCTGGTGACTTc > 2:610657/1‑143 (MQ=255) gatcgatATGGCTCGCCACCTGAA‑GCGACCATCATCAACGAAGGCGACATCAATACTCGCCGCGTTAAATCCGTCACTTTCTGCGCACGCAGCATTCCGCACATGCTGGAGCACTTCCGTGCCGGTTCTCTGCTGGTGACTTc < 2:783295/143‑1 (MQ=255) tatGGCTCGCCACCTGAA‑GCGACCATCATCAACGAAGGCGACATCAATACTCGCCGCGTTAAATCCGTCACTTTCTGCGCACGCAGCATTCCGCACATGCTGGAGCACTTCCGTGCCGGTTCTCTGCTGGTGCCTTCCGCAGa > 1:201222/1‑143 (MQ=255) gCTCGCCACCTGAA‑GCGACCATCATCAACGAAGGCGACATCAATACTCGCCGCGTTAAATCCGTCACTTTCTGCGCACGCAGCATTCCGCACATGCTGGAGCACTTCCGTGCCGGTTCTCTGCTGGTGACTTCGGCAGACCga > 1:20521/1‑142 (MQ=255) gCTCGCCACCTGAA‑GCGACCATCATCAACGAAGGCGACATCAATACTCGCCGCGTTAAATCCGTCACTTTCTGCGCACGCAGCATTCCGCACATGCTGGAGCACTTCCGTGCCGGTTCTCTGCCGGTGACTTCCGCAGACCGt > 2:121496/1‑143 (MQ=255) cTCGCCGCCTGAA‑GCGACCATCATCAACGAAGGCGACATCAATACTCGCGGCGATAGTTCCGTCACTTTCTGCGCACGCAGCATTCCGCACATGCTGGAGCACTTCCGTGCCGGTTCTCTGCTGGTGACTTCCGCAGACCGTc < 2:318945/143‑1 (MQ=255) tCGCCACCTGAA‑GCGACCATCATCAAGGAAGGCGACACCAATACTCGCCGCGTTAAATCCGTCACTTTCTGCGCACGCAGCATTCCGCACATGCGGGAGCACTTCCGTGCCGCTGCTCTGCTGGTGACTGCCGCGCACCGTcc > 2:748944/1‑143 (MQ=255) ccTGAA‑GCGACCATCATCAACGAAGGCGACATCAATACTCGCCGCGTTAAATCCGGCACTTTCTGCGCACGCAGCATTCCGCACATGCTGGAGCACTTCCGTGCCGGTTCTCTGCTGGTGACTTCCGCAGACCGTCCTGACGt < 1:763171/143‑1 (MQ=255) | CTCTTCCAAAGCTAAAGTAAACAATGTTGATCCGGCGAAGCTGCAAGAATCCAGCCCGCTGCCGGTTCT‑CGGCGCTGTGCCGTGGAGCTTTGACCTGATCGCGACTCGTGCGATCGATATGGCTCGCCACCTGAATGCGACCATCATCAACGAAGGCGACATCAATACTCGCCGCGTTAAATCCGTCACTTTCTGCGCACGCAGCATTCCGCACATGCTGGAGCACTTCCGTGCCGGTTCTCTGCTGGTGACTTCCGCAGACCGTCCTGACGT > NC_000913/2415331‑2415603 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |