New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 310438255 (1.080)3 (0.060) 3/268 7.7 5.5% intergenic (+14/‑51) yggX/mltC oxidative damage protective factor for iron‑sulfur proteins/membrane‑bound lytic murein transglycosylase C
?NC_000913 = 3104387 52 (1.080)intergenic (+19/‑46) yggX/mltC oxidative damage protective factor for iron‑sulfur proteins/membrane‑bound lytic murein transglycosylase C
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

AATGAAAAGAAACTCAACATGATGAATGCCGAGCACCGCAAGCTGCTTGAGCAGGAGATGGTCAACTTCCTGTTCGAGGGTAAAGAGGTGCATATCGAGGGCTATACGCCGGAAGATAAAAAATAAAAACAGTGCCGGAGCACGCCTCCGGCAACTTGCATAAAAACAAACACAACACGCACCCGGAATGATGAAAAAATATCTCGCGCTGGCTTTGATTGCGCCGTTGCTCATCTCCTGTTCGACGACCAAAAAAGGCGATACCTATAACGAAGCCTGG  >  NC_000913/3104243‑3104522
                                                                                                                                           |                                                                                                                                            
aaTGAAAAGAAACTCAACATGAGGAATGCCGAGCACCGCAAGCTGCTTGAGCAGGAGATGGTCAACTTCCTGTTCGAGGGTAAAGAGGTGCATATCGAGGGCTATACGCCGGAAGATAAAAAATAAAAACAGTGCCGGAGCAc                                                                                                                                           >  2:653009/1‑143 (MQ=255)
    aaaaGAAACTCAACATGATGAATGCCGAGCACCGCAAGCTGCTTGAGCAGGAGATGGTCAACTTCCTGCTCGAGGGTAAAGAGGTGCACATCGAGGGCTATACGCCGCAAGATAACAACTAAAAACAGTGCCGGAGCACggcc                                                                                                                                       >  2:911011/1‑140 (MQ=255)
        gAAACTCAACATGATGAATGCCGAGCACCGCAAGCTGCTTGAGCAGGAGGTGGTCAACTTCCTGTTCGAGGGTAAAGAGGTGCATATCGAGGGCTATACGCCGGAAGATAAAAAATAAAAACAGTGCCGGAGCACGCCCCCgg                                                                                                                                   >  2:170047/1‑143 (MQ=255)
             tCAACATGATGGATGCCGAGCACCGCAAGCTGCTTGAGCAGGAGATGGTCAACTTCCTGTTCGAGGGTAAAGAGGTGCATATCGAGGGCTATACGCCGGAAGATAAAAAATAAAAACAGCGCCGGAGCACGCCTCCCGCACCt                                                                                                                              >  2:256094/1‑143 (MQ=255)
             tCAACATGATGAATGCCGAGCACCGCAAGCTGCTTGAGCAGGAGATGGTCAACTTCCTGTTCGCGGGTACAGAGGTGCATATCGAGGGCTATACGCCGGACGATAAAAAATAAAAACAGTGCCGGAGCGCGCCTCCGGCCACt                                                                                                                              >  2:152002/1‑143 (MQ=255)
              ggacgtgatgaGTTGCGAGCGCCGGAGGCTGCTTGAGCATGAGATGGTCGACTTCCTGTTCGACGGTAAAGAGGTGCATATCGAGGGTTAGACGCCGGAAGATAAAAAATAAAAACCGTGCCGGAGCACGCCTCCGGCAACtt                                                                                                                             <  2:871382/138‑1 (MQ=255)
                   tgatgaATGCCGAGCACCGCAAGCTGCTTGAGCAGGAGATGGTCAACTTCCTGTTCGAGGGTAAAGAGGTGCATATCGAGGGCTATACGCCGGCAGATAAAAAATAAAAACAGTGCCGGAGCACGCCTCCGGCAACATGCaaa                                                                                                                        >  2:850527/1‑141 (MQ=255)
                      tgaATGCCGAGCACCGCGAGCTGCATGAGCAGGAGATGGTCAACTTCCTGTTCGAGGGTAAAGAGGTGCATATCGAGGGCTATACGCCGGAAGATAAAAAATAAAAACAGTGCCGGAGCACGCCTCCGGCAACTTGCATaaaa                                                                                                                     <  1:798749/143‑1 (MQ=255)
                       gaATGCCGAGCACCGCAAGCTGCTTGAGCAGGAGATGGTCAACTTCCTGTTCGAGGGGAAAGAGGTGCATATCGAGGGCTATACGCCGGGAGATAACACATAAAAACCGGGCCGCGGCACGCCTCCCGCCACTCGCACaaaaa                                                                                                                    >  1:272132/1‑143 (MQ=255)
                        aaTGCCGAGCACCGCAAGCTGCTTGAGCAGGAGATGGTCAACTTCCTGTTCGAGGGTAAAGAGGTGCATATCGAGGGCTATACGCCGGAAGATAAAAAATAAAAACAGGGCCGGAGCACGCCTCCGGCAACTTGCACAAaaac                                                                                                                   >  2:270328/1‑143 (MQ=255)
                          tGCCGAGCACCGCAAGCTGCTTGAGCAGGAGATGGTCAACTTCCTGTTCGAGGGTAAAGAGGTGCATATCGAGGGCTATACGCCGGAAGATAAAAAATAAAAACAGTGCCGGAGCACGCCTCCGGCAACTTGCATAAaaacaa                                                                                                                 <  1:716687/143‑1 (MQ=255)
                           gCCGGGCGCCGGAGGCGGGTTGAGCGGGAGAGGGTCAACTACCTGTTCGAGGGTAAAGAGGTGCATATCGAGGGCTATACGCCGGAAGATAAAAAATAAAAACAGTGCCGGAGCACGCCTCCGGCAACTTGCATAAaaacaaa                                                                                                                <  2:303692/143‑1 (MQ=255)
                           gCCGAGCACCGCAAGCTGCTTGAGCAGGAGATGGTCAACTTCCTGTTCGAGGGTAAAGAGGTGCATATCGAGGGCTATACGCCGGAAGATAAAAAATAAAAACAGTGCCGGAGCACGCCTCCGGCAACTTGCATAAaaacaaa                                                                                                                <  1:545269/143‑1 (MQ=255)
                            ccGAGCACCGCAAGCTGCTTGAGCAGGAGATGGTCAACTTCCTGTTCGAGGGTAAAGAGGTGCATATCGAGGGCTATACGCCGGAAGATAAAAAATAAAAACAGTGCCGGAGCACGCCTCCGGCAACTTGCATAAaaacaaac                                                                                                               >  1:644843/1‑143 (MQ=255)
                            ccGACCACCTCAAGCTGCTTGAGCAGGAGATGGTCAACTTCCTGTTCGAGGGTAAAGAGGTGCATATCGAGGGCTATACGCCGGAAGATAAAAAATAAAAACAGTGCCGGAGCACGCCTCCGGCAACTTGCATAAaaaccaac                                                                                                               >  1:214238/1‑143 (MQ=255)
                                         gctgctTGCGCAGGAGATGGTCAACTTCCTGTTCGAGGGTAAAGAAGTGTTTCAACACAAGGATACGCCGGAAGATAAAAAATAAAAACAGTGCCGGAGCACGCCTCCGGCAACTTGCATAAAAACAAACACAACACGCAccc                                                                                                  <  1:905573/143‑1 (MQ=255)
                                         gctgctTGAGCAGGAGATGGTCAACTTCCTGTTCGAGGGTAAAGAGGTGCATATCGAGGGCTATACGCCGGAAGATAAAAAATAAAAACAGTGCCGGAGCACGCCTCCGGCAACTTGCATAAAAACAAACACAACACGCAccc                                                                                                  >  2:11705/1‑143 (MQ=255)
                                                       ggaTGGTCAACTTCCTGTTCGAGGGTAAAGAGGTGCATATCGAGGGCTATACGCCGGAAGATAAAAAATAAAAACAGTGCCGGAGCACGCCTCCGGCAACTTGCATAAAAACAAACACAACACGCACCCGGAATGATGaaaaa                                                                                    <  1:101621/142‑1 (MQ=255)
                                                             tCAACTTCCTGTTCGAGGGTAAAGAGGTGCATATCGAGGGCTATACGCCGGAAGATAAAAAATAAAAACAGTGCCGGAGCACGCCTCCGGCAACTTGCATAAAAACAAACACAACACGCACCCGGAATGATGACAAAATAtct                                                                              >  2:773056/1‑143 (MQ=255)
                                                                 cTTCCTGTTCGAGGGTAAAGAGGTGCATATCGAGGGCTATACGCCGGAAGATAAAAAATAAAAACAGTGCCGGAGCACGCCTCCGGCAACTTGCATAAAAACAAACACAACACGCACCCGGAATGATGAAAAAATATCTcgcg                                                                          >  2:192587/1‑143 (MQ=255)
                                                                   tCCTGTTCGAGGGTAAAGAGGTGCATATCGAGGGCTATACGCCGGCAGATCACAAATAAAAACAGTGCCGGAGCACGCCTCCGGCAACTTGCATAAAAACAAACACACCACGCACCCGGAATGATGAAAAAATATCTCGCGCt                                                                        >  2:882774/1‑143 (MQ=255)
                                                                        ttCGAGGGTAAAGAGGTGCATATCGAGGGCTATACGCCACCAGATAAAAAATAAAAACCGTACCGGAGCACGCCTCCGGCAACTTGCATAAGAACAAACACAACACGCACCCGGAATGATGAAAAAATATCTCGCGCTGGCtt                                                                   <  1:569378/143‑1 (MQ=255)
                                                                         gcGAGGGTAAACAGGTGCATAGCGAGGGCTAGACGCCGGAAGATAAAAAATAAAAACAGTGCCGGAGCACGCCTCCGGCAACTTGCATAAAAACAAACACAACACGCACCCGGAATGATGAAAAAATATCTCGCGCTGGCttt                                                                  <  1:126488/142‑1 (MQ=255)
                                                                           gAGGGTAAAGAGGTGCATATCGAGGGCTATACGCCGGAAGATAAAAAATAAAAACAGTGCCGGAGCACGCCTCCGGCAACTTGCATAAAAACAAACACAACACGCACCCGGAATGATGAAAAAATATCTCGCGCTGGCTTTGa                                                                >  2:235549/1‑143 (MQ=255)
                                                                            agggacaaGAGGTGCACATCGAGGGCTATACGCGGGAAGATAAAAAATAAAAACAGTGCCGGAGCACGCCTCCGGCAACTTGCATAAAAACAAACACAACACGCACCCGGAATGATGAAAAAATATCTCGCGCTGGCTTTGAt                                                               <  2:722146/137‑1 (MQ=255)
                                                                            aGGGTAAAGAGGTGCATATCGAGGGCTATACGCCGGAAGATAAAAAATAAAAACAGTGCCGGAGCACGCCTCCGGCAACTTGCATAAAAACAAACACAACACGCACCCGGAATGATGAAAAAATATCTCGCGCTGGCTTTGAt                                                               >  2:561747/1‑143 (MQ=255)
                                                                                tAAAGAGGTGCATATCGAGGGCTATACGCCGGAAGATAAAAAATAAAAACAGTGCCGGAGCACGCCTCCGGCCACTTGCATAAAAACAAACACAACACGCCCCCGGAATGATCAAAAAATATCTCGCGCTAACTCTGATcgcg                                                           >  1:508396/1‑143 (MQ=255)
                                                                                  aaGAGGTGCATATCGAGGGCTATACGCCGGAAGATAAAAAATAAAAACAGTGCCGGAGCACGCCTCCGGCCACTTGCATAAAAACAAACACAACACGCACCCGGAATGATGAAACAATATCTCGCGCTGGCGTTGCTTGCGcc                                                         >  2:753085/1‑143 (MQ=255)
                                                                                      ggTGCATATCGAGGGCTATACGCCGGAAGATAAAAAATAAAAACAGTGCCGGAGCACGCCTCCGGCAACTTGCATAAAAACAAACACAACACGCACCCGGAATGATGAAAAAATATCTCGCGCTGGCTTTGATTGCGCCGTTg                                                     <  1:698918/143‑1 (MQ=255)
                                                                                      ggTGCATATCGAGGGCGAGACGCCGGAAGAAAAAAAATAAAAACAGTGCCGGAGCACGCCTCCGGCAACTTGCATAAAAACAAACACAACACGCACCCGGAATGATGAAAAAATATCTCGCGCTGGCTTTGATTGCGCCGTTg                                                     <  2:243843/143‑1 (MQ=255)
                                                                                         gCATATCGAGGGCTATACGCCGGAAGATAAAAAATAAAAACAGTGCCGGAGCACGCCTCCGGCAACTTGCATAAAAACAAACACAACACGCACCCGGAATGATGAAAAAATATCTCGCGCTGGCTTTGATTGCGCCGTTGcgc                                                  >  1:505515/1‑141 (MQ=255)
                                                                                           atatCGAGGGCTATACGCCGGAAGATAAAAAATAAAAACAGTGCCGGAGCACGCCTCCGGCAACTTGCATAAAAACAAACACAACACGCACCCGGAATGATGAAAAAATATCTCGCGCTGGCTTTGATTGCGCCGTTGCTCAt                                                >  1:41002/1‑143 (MQ=255)
                                                                                            tcgcGAGGGCTGTAGGCCGGAAGCAAGAAGATAAAAACAGTGCCGGAGCACGCCTCCGGCAACTTGCATAAAAACAAACACAACACGCACCCGGAATGATGAAAAAATATCTCGCGCTGGCTTTGATTGCGCCGTTGCTCAtc                                               <  2:145411/140‑1 (MQ=255)
                                                                                            tatCGAGGGCTATACGCCGGAAGATAAAAAATAAAAACAGTGCCGGAGCACGCCTCCGGCAACTTGCATAAAAACAAACACAACACGCACCCGGAATGATGAAAAAATATCTCGCGCTGGCTTTGATTGCGCCGTTGCTCAtc                                               <  1:362947/143‑1 (MQ=255)
                                                                                              tCGAGGGCTATACGCCGGAAGATAAAAAATAAAAACAGTGCCGGAGCACGCCTCCGGCAACTTGCATAAAAACAAACACAACACGCACCCGGAATGATGAAAAAATATCTCGCGCTGGCTTTGATTGCGCCGTTGCTCAtctc                                             <  1:789648/143‑1 (MQ=255)
                                                                                              tCGAGGGCTATACGCCGGAAGATAAAAAATAAAAACAGTGCCGGAGCACGCCTCCGGCAACTTGCATAAAAACAAACACAACACGCACCCGGAATGATGAAAAAATATCTCGCGCTGGCTTTGATTGCGCCGTTGCTCAtctc                                             <  2:561503/143‑1 (MQ=255)
                                                                                                   ggCTATACGCCGGAAGATAAAAAATAAAAACAGTGCCGGAGCACGCCTCCGGCAACTTGCATAAAAACAAACACAACACGCACCCGGAATGATGAAAAAATATCTCGCGCTGGCTTTGATTGCGCCGTTGCTCATCTCCTGtt                                        <  2:644843/143‑1 (MQ=255)
                                                                                                   gccTATACGCCGGAAGATAAAAAATAAAAACAGTGCCGGTGCACGCCTCCGGCAACTTGCATACAAACAAACACAACACGCACCCGGCATGATGAAAAAATATCTCGCGCTGGCTTCGATTGCGCCGTTGCTCATCTCCTGtt                                        <  2:870833/141‑1 (MQ=255)
                                                                                                         aCGCCGGAAGATAAAAAATAGAAAAAGTGCCGGAGAACGCCTCAGGCAACTTGCATAAAAACAAACACAACGCGCACCCGGAATGATGAAAAAATATCTCGCGCTGGCTTTGATTGCGCCGTTGCTCATCTCCTGTTcgacga                                  <  2:17013/143‑1 (MQ=255)
                                                                                                         aCGCCGGAAGATAAAAAATAAAAACAGTGCCGGAGCACGCCTCCGGCAACTTGCATAAAAACAAACACAACACGCACCCGGAATGATGAAAAAATATCTCGCGCTGGCTTTGATTGCGCCGTTGCTCATCTCCTGTTcgacga                                  <  1:276441/143‑1 (MQ=255)
                                                                                                                 aGATAAAAAATAAAAACAGGGCCGGAGCACGCCTCCGGCAACTTGCATAAAAACAAACACAACACGCACCCGGAAAGATGAAAAAATATCTCGCGCTGGCTTTGATTGCGCCGTTGCTCATCTCCTGTTCGACGACCaaaaaa                          <  2:458123/143‑1 (MQ=255)
                                                                                                                   ctaaaaaataaaaaCAGTGCCGGAGCACGCCTCCGGCAACTTGCATAAAAACAAACACAACACGCCCACGGAATGATGAAAAAATATCTCGCGCTAGCTTTGATTCCGCCGGAGCTCATCTCCTGCTCGACGCCCAAAAAAgg                        >  2:318262/2‑143 (MQ=255)
                                                                                                                   ataaaaaataaaaaCAGTGCCGGAGCACGCCTCCGGCAACTTGCATAAAAACAAACACAACACGCACCCGGAATGATGAAAAAATATCTCGCGCTGGCTTTGATTGCGCCGTTGCTCATCTCCTGTTCGACGACCAAAAAAgg                        <  1:653009/143‑1 (MQ=255)
                                                                                                                    taaaaaataaaaaCAGTGCCGGAGCACGCCTCCGGCAACTTGCATAAAAACAAACACAACACGCACCCGGAATGATGAAAAAATATCTCGCGCTGGCTTTGATTGCGCCGTTGCTCATGTCGTGTTCGAGGAAGAAAAAAGGc                       >  1:272861/1‑143 (MQ=255)
                                                                                                                    taaaaaataaaaaCAGTGCCGGAGCACGCCTCCGGCAACTTGCATAAAAACAAACACAACACGCACCCGGAATGATGAAAAAATATCTCGCGCTGGCTTTGATTGCGCCGTTGCTCATCTCCTGTTCGACGACCAAAAAAGGc                       >  1:120824/1‑143 (MQ=255)
                                                                                                                    taaaaaataaaaaCAGTGCCGGAGCACGCCTCCGGCAACTTGCATAAAAACAAACACAACACGCACCCGGAATGATGAAAAAATATCTCGCGCTGGCTTTGATTGCGCCGTTGCTCATCTCCTGTTCGACGACCAAAAAAGGc                       <  1:235549/143‑1 (MQ=255)
                                                                                                                     aaaaaataaaaaCAGTGCCGGAGCACGCCTCCGGCAACTTGCATAAAAACAAACACAACACGCACCCGGAATGATGAAAAAATATCTCGCGCTGGCTTTGCTTGCGCCGTTGCTCATATCCTGTTCGACGACCAAAAAAGGCg                      >  2:218693/1‑143 (MQ=255)
                                                                                                                      aaaaataaaaaCAGTGCCGGAGCACGCCTCCGGCAACTTGCATAAAAACAAACACAACACGCACCCGGAATGATGAAAAAATATCTCGCGCTGGCTTTGATTGCGCCGTTGCTCCTCTCCTGTTCGACGACCAAAAAAGGCGa                     >  1:320318/1‑143 (MQ=255)
                                                                                                                      aaaaataaaaaCAGTGCCGGAGCACGCCTCCGGCAACTTGCATAAAAACAAACACAACACGCACCCGGAATGATGAAAAAATATCTCGCGCTGGCTTTGATTGCGCCGTTGCTCATCTCCTGTTCGACGACCAAAAAAGGCGa                     <  1:561747/143‑1 (MQ=255)
                                                                                                                       aaaataaaaaCAGTGCCGGAGCACGCCTCCGGCAACATGCATAAAAACAAACACAACACGCACCCGGAATGATGAAAAAATATCTCGCGCTGGCTTTGATTGCGCCGTTGCTCCTCCCCGGTTCCACCACCAAAAAAGCCGaa                    >  2:253405/1‑142 (MQ=255)
                                                                                                                        aaataaaaaCCTGGCCGGAGCACGCCTCCGGCAACTTGCATAAAAACAAACACAACACGCACCCGGAATGATGAAAAAATATCTCGCGCTGGCTTTTATTGCGCCGTTGCTCATCTCCTGTTCGACGACCAAAAAAGGCGATa                   <  1:224738/143‑1 (MQ=255)
                                                                                                                                   gTGCCGGAGCACGCCTCCGGCAACTGGCATAAAAACAAACACAACACGCACCCGGAATGATGAAAAAATATCTCGCGCTGGCTTTGATTGCGCCGTTGCTCATCTCCTGTTCGACGACCAAAAAAGGCGATACCTATAACGaa        <  2:558336/143‑1 (MQ=255)
                                                                                                                                      ccGGAGCACGCCTCCGGCAACTTGCATAAAAACAAACACAACACGCACCCGGAATGATGAAAAAATATCTCGCGCTGGCTTTGATTGCGCCGTTGCTCATCTCCTGTTCGACGACCAAAAAAGGCGATACCTATAACGAAGcc     >  1:156200/1‑143 (MQ=255)
                                                                                                                                        ggAGCACGCCTCCGGCAACTTGCATAAAAACAAACACAACACGCACCCGGAATGATGAAAAAATATCTCGCGCTGGCTTTGATTGCGCCGTTGCTCATCTCCTGTTCGACGACCAAAAAAGGCGATACCTATAACGAAGCCTg   <  1:442503/143‑1 (MQ=255)
                                                                                                                                         gAGCACGCCTCCGGCAACTTGCATAAAAACAAACACAACACGCACCCGGAATGATGAAAAAATATCTCGCGCTGGCTTTGATTGCGCCGTTGCTCATCTCCTGTTCGACGACCAAAAAAGGCGATACCTATAACGAAGCCTgg  <  1:270328/143‑1 (MQ=255)
                                                                                                                                         gAGCACGCCTCCGGCAACTTGCACAACAACAACCACACCACGCACCCGGAATGATGAAAAAATATCTCGCGCTGGCTTTGATTGCGCCGTTGCTCATCTCCTGTTCGACGACCAAAAAAGGCGATACCTATAACGAAGCCTgg  <  2:345846/143‑1 (MQ=255)
                                                                                                                                           |                                                                                                                                            
AATGAAAAGAAACTCAACATGATGAATGCCGAGCACCGCAAGCTGCTTGAGCAGGAGATGGTCAACTTCCTGTTCGAGGGTAAAGAGGTGCATATCGAGGGCTATACGCCGGAAGATAAAAAATAAAAACAGTGCCGGAGCACGCCTCCGGCAACTTGCATAAAAACAAACACAACACGCACCCGGAATGATGAAAAAATATCTCGCGCTGGCTTTGATTGCGCCGTTGCTCATCTCCTGTTCGACGACCAAAAAAGGCGATACCTATAACGAAGCCTGG  >  NC_000913/3104243‑3104522

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.