New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_000913 | = 1446765 | 53 (1.040) | 4 (0.080) | 3/264 | 7.6 | 6.9% | coding (519/906 nt) | feaR | transcriptional activator for tynA and feaB |
? | NC_000913 | = 1446820 | 58 (1.220) | coding (464/906 nt) | feaR | transcriptional activator for tynA and feaB | |||||
Rejected: Coverage evenness skew score above cutoff. | |||||||||||
Rejected: Frequency below/above cutoff threshold. |
TTTTTGAAACTGACGTTCACGACGAGGTTGAACAGATTCCCGCTGATGAAGTACCGGGCGCAGCAGACACACCATCGCCTGTAGCGCAGCTTCACTTTCTGTTTCAGAAAGTGCCGGATTATTCATGCTCTCCTGTAACAGGCGATGACTGAGTTGCACCATGGGTAAGTCAGCGTCCAGTCTTTCTGCGCAGATAGGTTTTTGATGGGGAAAATATTGTTCCAGCAGAGTGCGTGGCAAAAGTAATGAAATCTGTTTAGAAGACTCCTGCCAGTAA > NC_000913/1446684‑1446960 | tttttGAAACTGACGTTCACGACGAGGTTGAACAGATTCCCGCTGATGAAGTACCGGGCGCAGCAGACACACCATCGCCTGTAGCGCGGCTTCACCTTCTGTTTCAGAAAGTGCCGGATTCTTCATGCTCTCGTGGAACAGGc > 2:25830/1‑143 (MQ=255) tttttGAAACTGACGTTCACGACGAGGTTGAACAGATTCCCGCTGATGAAGTACCGGGCGCAGCAGACACACCATCGCCTGTAGCGCAGCTTCACTTTCTGTTTCAGAAAGTGCCGGCTTGTTCCTGGCCTCCTGTAACAGGc > 2:631379/1‑143 (MQ=255) ttGAAACTGACGTTCACGACGAGGTTGAACAGATTCCCGCTGATGAAGTACCGGGCGCAGCAGACACACCATCGCCTGTAGCGCAGCTTCACTTTCTGTTTCAGAAAGTGCCGGATTATTCATGCTCTCCTGTAACAGGCGAt < 2:571571/143‑1 (MQ=255) gAAACTGACGTTCACGACGAGGTTGAACAGATTCCCGCTGATGAAGTACCGGGCGCAGCAGACACACCATCGCCTGTAGCGCAGCTTCACTTTCTGTTTCAGAAAGTGCCGGATTATTCATGCTCTCCTGTAACAGGCGATGa < 1:141649/143‑1 (MQ=255) gAAACTGACGTGCACGACGAGGTTGAACAGATTCCCGCTGATGAAGTACCGGGCGCAGCAGACACACCATCGCCTGTAGCGCAGCTTCACTTTCTGTTTCAGAAAGTGCCGGATTATTCATGCTCTCCTGTAACAGGCGATGa < 1:261098/143‑1 (MQ=255) aaCTGACGTTCACGACGACGTTGAACAGATTCCCGCTGATGAAGTACCGGGCGCAGCAGACACACCATCGCCTGTAGCGCAGCTTCACTTTCTGTTTCAGAAAGTGCCGGATTATTCATGCTCTCCTGTAACAGGCGATGACt < 1:713906/143‑1 (MQ=255) aCTGACGTTCACGACGAGGTTGAACAGATTCCCGCTGATGAAGTACCGGGCGCAGCAGACACACCATCGCCTGTAGCGCAGCTTCACTTTCTGTTTCAGAAAGTGCCGGATTATTCATGCTCTCCTGTAACAGGCGATGACTg > 2:716738/1‑143 (MQ=255) tGACGTTCACGACGAGGTTGAACAGATTCCCGCTGATGAAGTACCGGGCGCAGCAGACACACCATCGCCTGTAGCGCAGCTTCACTTTCTGTTTCAGAAAGTGCCGGATTAGTCGTGCTCTCCTGTAACAGGCGATGACTGAg > 2:882589/1‑143 (MQ=255) aggctCACGACGAGGTTGAGCAGATTCCCGCTGATGAAGTACCGGGCGCAGCAGACACACCATCGCCTGTAGCGCAGCTTCACTTTCTGTTTCAGAAAGTGCCGGATTATTCATGCTCTCCTGTAACAGGCGATGACTGAGtt < 2:568838/139‑1 (MQ=255) aCGGTCACGACGAGGTTGAACAGATTCCCGCTGATGAAGTACCGGGCGCAGCAGACACACCATCGCCTGTAGCGCAGCTTCACTTTCTGTTTCAGAAAGTGCCGGATTATTCATGCTCTCCTGTAACAGGCGATGACTGAGtt < 1:692678/143‑1 (MQ=255) ttCACGACGAGGTTGAACAGATTCCCGCTGATGAAGTACCGGGCGCAGCAGACACACCATCGCCTGTAGCGCAGCTTCACTTTCTGTTTCAGAAAGTGCCGGATTATTCATGCTCTCCTGTAACAGGCGATGACTGAGTTGCa > 2:682191/1‑143 (MQ=255) cgacgaGTTTGAACAGATTTCCGCTGATGACGGACCGGGCGCAGCAGACACACCATCGCCTGTAGCGCAGCTTCACTTTCTGTTTCAGAAAGTGCCGGATTATTCATGCTCTCCTGTAACAGGCGATGACTGAGTTGCACCAt < 2:343779/143‑1 (MQ=255) gaGGTTGAACAGATTCCCGCTGATGAAGTACCGGGCGCAGCAGACACACCATCGCCTGTAGCGCAGCTTCACTTTCTGTTTCAGAAAGTGCCGGATTATTCATGCTCTCCTGTAACAGGCGATGACTGAGTTGCACCATGGGt < 1:629052/143‑1 (MQ=255) tGAACAGATTCCCGCTGATGAAGTACCGGGCGCAGCAGACACACCATCGCCTGTAGCGCAGCTTCACTTTCTGTTTCAGAAAGTGCCGGATTATTCATGCTCTCCTGTAACAGTCGATGCCTGAGCTACACCATGGGTAAGTc > 1:672810/1‑143 (MQ=255) gAACAGATTCCCGCTGATGAAGTACCGGGCGCAGCAGACACACCATCGCCTGTAGCGCAGCTTCACTTTCTGTTTCAGAAAGTGCCGGATTATTCATGCTCTCCTGTAACAGGCGATGACTGAGTTGCACCATGGGTAAGTCa < 2:822408/143‑1 (MQ=255) aGATTCCCGCTGATGAGGGACCTGGCGCATCTGACACACCATCGCATGTAGCGCAGCTTCACTTTCTGTTTCAGAAAGTGCCGGATTATTCATGCTCTCCTGTAACAGGCGATGACTGAGTTGCACCATGGGTAAGTCAGCGt < 2:302087/143‑1 (MQ=255) aTTCCCGCTGATGAAGTACCGGACGCAGCAGACACACCATCGCCTGTAGCGCAGCTTCACCTTCTGTTTCAGAAAGTGCCGGATTATTCATGCTCTCCTGTAACAGGCGATGACTGAGTTGCACCATTGGTAAGTCAGCGTcc < 2:769108/143‑1 (MQ=255) ccGCTGATGAAGTACCGGGCGCAGCAGACACACCATCGCCTGTAGCGCAGCTTCACTTTCTGTTTCAGAAAGTGCCGGATTCTTCATGCTCTCCTGTAAACGGCGATGACTGAGTTGCACCCTGGGGAAGTCAGCGGCCAGTc > 2:258933/1‑143 (MQ=255) aGTACCGGGCGCAGCAGACACACCATCGCCTGTAGCGCAGCTTCACTTTCTGTTTCAGAAAGTGCCGGATTATTCATGCTCTCCTGTAACAGGCGATGACTGAGTTGCACCATGGGTAAGTCAGCGTCCAGTCTTTCTGCGCa > 1:815249/1‑143 (MQ=255) aGTACCGGGCGCAGCAGACACACCATCGCCTGTAGCGCAGCTTCACTTTCTGTTTCAGAAAGTGCCGGATTATACATGCTCTCCTGTAACAGGCGATGACGGAGTTGCACCATGGGTAAGTCAGCGTCCAGTCTTTCTGCGCa > 2:804794/1‑143 (MQ=255) gTACCGGGCGCAGCAGACACACCATCGGCTGTAGCGCAGCTTCACTTTCGGTTTCAGAAAGTGCCGGATTATTCATGCTCTCCTGTAACAGGCGATGACTGAGTTGCACCATGGGTAAGTCAGCGTCCAGTCTTTCTGCGCAg < 2:890699/143‑1 (MQ=255) tACCGGGGGCAGCAGACACGCCAGCGCCTGTAGCGCAGCTTCACTTCCTGTGTCAGAAAGTGCCGGATTATTCATGCTCTCCTGTACCAGGCGATGACTGAGTTGCACCATGGGTAAGTCAGCGTACAGTCTTTCTTCGCAGa < 2:505030/143‑1 (MQ=255) gggCGCAGCAGACACACCATCGCCTGTAGCGCAGCTTCACTTTCTGTTTCAGAAAGTGCCGGATTATTCATGCTCTCCTGTAACAGGCGATGACTGAGTTGCACCATGGGTAAGTCAGCGTCCAGTCTTTCTGCGCAGATAgg > 1:805686/1‑143 (MQ=255) gggCGCAGCAGACACACCATCGCCTGTACCGCAGCGTCACTTTCTGTTTCAGAAAGTGCCGGATTATTCATGCTCTCCTGTCACAGCCGATGACTGCGCTGCACCACGGGTCAGCCAGCGGCCAGCCTTTCCGCGCAGATAgg > 2:848216/1‑143 (MQ=255) ggCGCAGCAGACACACCATCGCCTGTAGCGCAGCTTCACTTTCTGTTTCAGAAAGTGCCGGATTATTCATGCTCTCCTGTAACAGGCGATGACTGAGTTGCACCATGGGTAAGTCAGCGTCCAGTCTTTCTGCGCAGATAGGt < 2:464837/143‑1 (MQ=255) ggCGCAGCAGACACACCATCGCCTGTAGCGCAGCTTCACTTTCTGTTTCAGAAAGTGCCGGATTATTCATGCTCTCCTGTAACAGGCGATGACTGAGGTGCACCATGGGTAAGTCAGCGTCCAGTGTGTGTGCGCAGATAGGt > 1:430692/1‑143 (MQ=255) cgcAGCAGACACACCATCGCCTGTAGCGCAGCTTCACTTTCTGTTTCAGAAAGTGCCGGATTATTCATGCTCTCCTGTAACAGGCGATGACTGAGTTGCACCATGGGTAAGTCAGCGTCCAGTCTTTCTGCGCAGATAGGttt > 1:651758/1‑143 (MQ=255) aagACACACCATCGCCTGGAGCGCAGCTTCACGTTCTGTTGCAGAAAGTGCCGGATTATGCATGCTCTCCTGTAACAGGCGATGACTGAGTTGCACCATGGGTAAGTCAGCGTCCAGTCTTTCTGCGCAGATAGGTTTTTGAt < 1:263892/142‑1 (MQ=255) gACACCGCATCGCCTGTAGCGCAGCTTCACTTTCTGTTTCAGAAAGTGCCGGATTATTCATGCTCTCCTGTAACAGGCGATGACTGAGTTGCACCATGGGTAAGTCAGCGTCCAGTCTTTCTGCGCAGATAGGTTTTTGATgg < 1:95691/143‑1 (MQ=255) gACACACCTCCGCCTGTAGTGCAGCTTCACTTTCTGTTTCAGAAAGTGCCGGATTATTCATGCTCTCCTGTAACAGGCGATGACTGAGTTGCACCATGGGTAAGTCAGCGTCCAGGCTTTCTGCGCAGATAGGTTTTTGATgg < 2:564083/143‑1 (MQ=255) ccTGTAGCGCAGCTTCACTTTCTGTTTCAGAAAGTGCCGGATTATTCATGCTCTCCTGTAACAGGCGATGACTGAGTTGCACCATGGGTAAGTCAGCGTCCAGTCTTCGTGCGCAGATAGGTTTGTGGTGGGGaaagaagggt > 2:498170/1‑136 (MQ=255) tGTAGCGTAGCTTTACTTTCTGTTTCAGAAAGTGGCGGATTATTCATGGTCTCCTGTAGCAGGCGATGACTGAGTTGGACCATGGGTAAGTCAGCGTCCAGTCTTTCTGCGCAGATAGGTTTTTGATGGGGAAAATATTGTTc < 1:803595/143‑1 (MQ=255) gTAGCGCAGCTTCACTTTCTGTTTCAGAAAGTGCCGGATTATTCATGCTCTCCTGTAACAGGCGATGACTGAGTTGCACCATGGGTAAGTCAGCGTCCAGTCTTTCTGCGCAGATAGGTTTTTGATGGGGAAAATATTGTTcc < 1:716738/143‑1 (MQ=255) gcgcAGCTTCACTTTCTGTTTCAGAAAGTGCCGGATTATTCATGCTCTCCTGTAACAGGCGATGACTGAGTTGCACCATGGGTAAGTCAGCGTCCAGTCTTTCTGCGCAGATAGGTTTTTGAGGGGGAGAATATTGTTCcagc > 1:519954/1‑143 (MQ=255) gcgcAGCTTCACTTTCTGTTTCAGAAAGTGCCGGATTATTCATGCTCTCCTGTAACAGGCGATGACTGAGTTGCACCATGGGTAAGTCAGCGTCCAGTCTTTCTGCGCAGATAGGCTTTTGATGGGGAAAATATTGTTCcagc > 2:260750/1‑143 (MQ=255) cgcAGCTTCACTTTCTGTTTCAGAAAGTGCCGGATTATTCATGCTCTCCTGTAACAGGCGATGACTGAGTTGCACCATGGGTAAGTCAGCGTCCAGTCTTTCTGCGCAGATAGGTTTTTGATGGGGAAAATATTGTTCcagaa > 2:85774/1‑141 (MQ=255) cAGCTTCACTTTCTGTTTCAGAAAGTGCCGGATTATTCATGCTCTCCTGTAACAGGCGATGACTGAGTGGCACCATGGGTAAGTCAGCGTCCAGTCTTTCTGCGCAGATAGGTTTTTGATGGGGAAAATATTGTTCCAGCaga < 1:118345/143‑1 (MQ=255) tCACTTTCTGTTTCAGAAAGTGCCGGATTATTCATGCTCTCCTGTAACAGGCGATGACTGAGTTGCACCATGGGTAAGTCAGCGTCCAGTCTTTCTGCGCAGATAGGTTTTTGATGGGGAAAATATTGTTCCAGCAGAGTGCg > 1:162463/1‑143 (MQ=255) tCACTTTCTGTTTCAGAAAGTGCCGGATTATTCATGCTCTCCTGTAACAGGCGATGACTGAGTTGCACCATGGGTAAGTCAGCGTCCAGTCTTTCTGCGCAGATAGGTTTTTGATGGGGAAAATATTGTTCCAGCAGAGTGCg < 1:712447/143‑1 (MQ=255) tCACTTTCTGTTTCAGAAAGTGCCGGAGTATTCATGCTCTCCTGTAACAGGCGATGACTGAGATGCACCATGGGTAAGTCAGCGTCCAGTCTTTCTGCGCAGATAGGTTTTTGATGGGGAAAATATTGTTCCAGCAGAGTGCg < 1:712459/143‑1 (MQ=255) aCTTTCTGTTTCAGAAAGTGCCGGATTATTCATGCTCTCCTGTAACAGGCGATGACTGAGTTGCACCATGGGTAAGTCAGCGTCCAGTCTTTCTGCGCAGATAGGTTTTTGATGGGGAAAATATTGTTCCAGCAGAGTGCGTg < 1:824001/143‑1 (MQ=255) aCTTTCGGTTTCAGAAAGTGCCGGATTATTCATGCTCTCCTGTAACAGGCGATGACTGAGTTGCACCATGGGTAAGTCAGCGTCCAGTCTTTCTGCGCAGATAGGTTTTTGATGGGGAAAATATTGTTCCAGCAGAGTGCGTg < 1:159774/143‑1 (MQ=255) gtttGTGTTTCAAAAAGTGCCGGAGTATTCATGTTCTGCTGTAACAGGCGATGACTGAGTTGCACTATGGGTAAGTCAGCGGCCAGTCTTTCTGCGCAGATAGGTTTTTGATGGGGAAAATATTGTTCCAGCAGAGTGCGTgg < 2:830304/142‑1 (MQ=255) tttCTGTTTCAGAAAGTGCCGGATTATTCATGCTCTCCTGTAACAGGCGATGACTGAGTTGCACCATGGGTAAGTCAGCGTCCAGTCTTTCTGCGCAGATAGGTTTTTGATGGGGAACATATTGTTCCACCAGAGCGCGTGGc > 2:288327/1‑143 (MQ=255) tttCTGTTTCAGAAAGTGCCGGATTATTCATGCTCTCCTGTAACAGGCGATGACTGAGTTGCACCATGGGTAAGTCAGCGTCCAGTCTTTCTGCGCAGATAGGTTTTTGATGGGGAAAATATTGTTCCAGCAGAGTGCGTGGc > 1:180085/1‑143 (MQ=255) cTGTTTCAGGAAGTGCCGGATTATTCATGCTCTCCTGTAACAGGCGATGACTGAGTTGCACCATGGGTAAGTCAGCGTCCAGTCTTTCTGCGCAGATAGGTTTTTGATGGGGAAAATATTGTTCCAGCAGAGTGCGTGGCaaa < 2:450521/143‑1 (MQ=255) tttCAGAAAGTGCCGGATTATTCATGCTCTCCTGTAACAGGCGATGACTGAGTTGCACCATGGGTAAGTCAGCGTCCAGTCTTTCTGCGCAGATAGGTTTTTGATGGGGAAAATATTGTTCCCGCAGAGTGCGGGGCAAAAGt > 2:239640/1‑143 (MQ=255) gAAAGTGCCGGATTATTCATGCTCTCCTGTAACAGGCGATGACTGAGTTGCACCATGGGTAAGTCAGCGTCCAGTCTTTCTGCGCCGCTAGGGTTGTGATGGGGAAAATATTGTTCCAGCAGAGTGCGTGGCAAGAGGAATGa > 2:546493/1‑143 (MQ=255) aaaGTGCCGGATTATTCATGCTCTCCTGTAACAGGCGATGACTGAGTTGCACCATGGCTAAGTCAGCGTCCAGTCTTTCTGCGCAGATAGGTTTTTGATGGGGAAAATATTGTTCCAGCAGAGTGCGTGGCAAAAGTAATGaa > 2:40758/1‑143 (MQ=255) gctgATTATTCATGCTCGCCTGTACCAGGCGATGACGGAGTTGCACCATGGGTAAGTCAGCGCCCACCCTTTCTGCGGAGATATGTGTTTGAGGGGGAAAATATTGTTCCAGCAGAGTGCGTGGCAAAAGTAATGAAATCTGt < 2:151415/140‑1 (MQ=255) ccggcgaattCATGCTCTCCGGTAACACGCTGTGAGTGGGTGGCACCATGAGTAAGGCAGCGCCCAGTCTCTCTGCGCAGATAGGTTTTTGATGGGGAAAATATTGTTCCAGCAGAGTGCGTGGCAAAAGTAATGAAATCTGt < 1:463158/136‑1 (MQ=255) gATTATTCATGCTCTCCTGTAACAGGCGATGACTGAGTTGCACCATGGGTAAGTCAGCGTCCAGTCTTTCTGCGCAGATAGGTTTTTGATGGGGAAAATATTGTTCCAGCAGAGTGCGTGGCAAAAGTAATGAAATCGGTTTa > 2:375594/1‑143 (MQ=255) attattCATGCTCTCCTGTAACAGGCGATGACTGAGTTGCACCATGGGTAAGTCAGCGTCCAGTCTTTCTGCGCAGATAGGTTTTTGATGGGGAAAATATTGTTCCAGCAGAGTGCGTGGCAAAAGTAATGAAATCTGTTTag < 1:444477/143‑1 (MQ=255) gtCATGCACTCCTGTAACAGGCGATGACTGAGTTGCACCATGAGTAAGTCAGCCTCCAGTCTTTCTGCGCAGATACGGTTTTGATGGGGAAAATATTGTTCCAGCAGAGTGCGTGGCAAAAGTAATGAAATCTGTTTagaaga < 1:682191/142‑1 (MQ=255) tCATGCTCTCCTGTAACAGGCGATGACTGAGTTGCACCATGGGTAAGTCAGCGTCCAGTCTTTCTGCGCAGATAGGTTTTTGATGGGGAAAATATTGTTCCAGCAGAGTGCGTGGCAAAAGTAATGAAATCTGTTTAGAAGAc > 2:330966/1‑143 (MQ=255) gCTCTTCTGTAACAGGCGAGGACTGAGTTGCACCATGGGTAAGTCAGCGTCCAGTCTTTCTGCGCAGATAGGTTTTTGTTGGGGAAAATATTGTTCCAGCAGAGTGCGTGGCAAAAGTAATGAAATCTGTTTAGAAGACTCCt < 1:226553/143‑1 (MQ=255) tctcCTGTAACAGGCGATGACTGAGTTGCACCATGGGTAAGTCAGCGTCCAGTCTTTGTGCGCAGATAGGTTTTTGATGGGGAAAATATTGTGCCAGCAGAGTGCGTGGCAAAAGTAATGAAATCGTTTGAGCAGACTCCTGc > 2:312785/1‑143 (MQ=255) tctcCTGTAACAGGCGATGACTGAGTTGCACCATGGGTAAGTCAGCGTCCAGTCTTTCTGCGCAGATAGGTTTTTGATGGGGAAACTATTGTTCCGGCAGCGTGCGTGGCAAAAGTAATGAAATCTGTTTACAAGACTCCTGc > 1:372019/1‑143 (MQ=255) ggctccaaCAGGCGCTGACTGAGGTGGACCATGGGTAAGTCAGCTTCTAGTCTTTCTGCGCAGATAGGTTTTTGGTGGGGAAAATATTGTTCCAGCAGAGTGCGTGGCAAAAGTAATGAAATCTGTTTAGAAGCCTCCTGCCa < 2:519532/137‑1 (MQ=255) tGTAACAGGCGATGACTGAGTTGCACCATGGGTAAGTCAGCGTCCAGTCTTTCTGCGCAGATAGGTTTTTGATGGGGAAAATATTGTTCCAGCAGAGTGCGTGGCAAAAGTAATGAAATCTGTTTAGACGACTCCTGCCAGTa > 2:700723/1‑143 (MQ=255) gTAACAGGCGATGACTGAGTTGCACCATGGGTAAGTCAGCGTCCAGTATTTCTGCGCAGATAGGATTTGGACGGGGAAAATATTGTTCCAGCCGAGTGCGTGGCATAAGTAATGAACTCGGTATAGCAGACTCCTGCCAGtca > 2:436682/1‑141 (MQ=255) | TTTTTGAAACTGACGTTCACGACGAGGTTGAACAGATTCCCGCTGATGAAGTACCGGGCGCAGCAGACACACCATCGCCTGTAGCGCAGCTTCACTTTCTGTTTCAGAAAGTGCCGGATTATTCATGCTCTCCTGTAACAGGCGATGACTGAGTTGCACCATGGGTAAGTCAGCGTCCAGTCTTTCTGCGCAGATAGGTTTTTGATGGGGAAAATATTGTTCCAGCAGAGTGCGTGGCAAAAGTAATGAAATCTGTTTAGAAGACTCCTGCCAGTAA > NC_000913/1446684‑1446960 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |