Predicted mutation
evidence seq id position mutation annotation gene description
JC JC NC_000913 1,979,486 IS5 (+) +4 bp intergenic (‑271/‑264) insA ← / → uspC IS1 repressor TnpA/universal stress protein

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 1979486 =0 (0.000)82 (1.610) 58/284 0.0 100% intergenic (‑271/‑267) insA/uspC IS1 repressor TnpA/universal stress protein
?NC_000913 2101749 = NA (NA)noncoding (1195/1195 nt) IS5 repeat region
* ? NC_000913 = 19794890 (0.000)73 (1.430) 43/284 0.2 100% intergenic (‑274/‑264) insA/uspC IS1 repressor TnpA/universal stress protein
?NC_000913 = 2290113 NA (NA)noncoding (1/1195 nt) IS5 repeat region

TTCACAGTACATAAAGTAACCTTGATCGAAGCCATTTACACGCACAAAATCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGT  >  NC_000913/2101609‑2101882
                                                                                                                                            |                                                                                                                                     
ttCACAGTACATAAAGTAACCTTGATCGAAGCCATTTACACGCACAAAATCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTaagga                                                                                                                                     <  1:809836/143‑1 (MQ=255)
  cacaGTACATAAAGTAACCTTGATCGAAGCCATTTACACGCACAAAATCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTaaggaag                                                                                                                                   <  2:553173/143‑1 (MQ=255)
   acaGTACATAAAGTAACCTTGATCGAAGCCATTTACACGCACAAAATCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTaaggaagg                                                                                                                                  >  2:186374/1‑143 (MQ=255)
      gTATATAAAGTAACCTTGATCGAGACAATTGACACGCAGAAAATCTGAAAAACGTAACAGCATAAATGATTCTGCGCACCAATCAACAATCGTATCAGAATAGATATTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGc                                                                                                                               <  2:724451/143‑1 (MQ=255)
       tataTAAAATAACAATGATCGAAGCCATTAACACGAAAAAAATCTCAAAAACGTACCAGCATAAATGATCCTGCGCACCAATCAACAACCTTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCg                                                                                                                              <  2:618382/140‑1 (MQ=255)
        aCATAAAGTAACCTTGATCGAAGCCATTTACACGCACAAAATCTGAAAACCGTACCAGCATAAATGATCCTGCGCACCAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGa                                                                                                                             <  1:295707/143‑1 (MQ=255)
          aTAAAGTAACCTTGCTCGACGCCATTTACACGCACAAAATCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAAt                                                                                                                           <  2:679991/143‑1 (MQ=255)
                    cTTGATCGAAGCCATTTACACGCACAAAATCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATGTTTGTTTTATTAACGAAGGCGCTAATAAACGGGGaa                                                                                                                 >  2:499327/1‑143 (MQ=255)
                     ttGATCGAAGCCATTTACACGCACAAAATCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGaaa                                                                                                                <  2:597606/143‑1 (MQ=255)
                     ttGATCGAAGCCATTTACACGCACAAAATCTGAAAAACGTACCAGCATAAATGATACTGCGCACCAATCAACAACCGTGTCAGAATAGATACTTTCCTTAGGAATTTCTGGTTTATTAAGGAAGGTGCGAATAAGCGGGGaaa                                                                                                                >  2:736090/1‑143 (MQ=255)
                         tCGAAGCCATTTACACGCACAAAAACTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAATCAACAACCGTATCAGAATAGATACTGTCTATAGGAATATGTGTTTGATTAAGGCAGGTGCGCATAAGCGGGGAAAttct                                                                                                            >  1:390879/1‑143 (MQ=255)
                               ccATTTCCACGCACAAAATCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCgg                                                                                                      <  1:118572/143‑1 (MQ=255)
                               ccATTTACACGCACAAAATCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGAGAATAAGCGGGGAAATTCTTCTCgg                                                                                                      >  2:418336/1‑143 (MQ=255)
                                   ttACACGCACAAAATCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAATCAACAACCGTAACAGTATAGATTCGTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGa                                                                                                  <  2:275989/143‑1 (MQ=255)
                                         gCACAAAATCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGt                                                                                            >  1:238469/1‑143 (MQ=255)
                                                aTCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGtcatttca                                                                                     >  1:823351/1‑143 (MQ=255)
                                                     aaaaaCGTACCAGCATAAATGATCCTGCGCACCAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTCAGAACGGTGCCAGTAATCGGGGGAACCCCTTTGTGGTGGCTCAGTCATTTCATttct                                                                                >  1:125384/1‑143 (MQ=255)
                                                     aaaaaCGTACCAGCATAAATGATCCTGCGCACCAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATttct                                                                                <  1:186374/143‑1 (MQ=255)
                                                      aaaaCGTACCAGCATAAATGATCCTGCGCACCAATCAACAACCGTATCAGAATAGATACTTTCTTTAGCAATTTTTGATTTATGAAAGAATGTTCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATttctt                                                                               <  1:865041/143‑1 (MQ=37)
                                                           gaaCCAGCATAAATGATCCTGCGCACCAATCAACAACCGTATCAGATTAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGt                                                                          <  1:864172/141‑1 (MQ=255)
                                                            tACCAGCATAAATGATCCTGCGCACCAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGtt                                                                         <  2:211808/143‑1 (MQ=255)
                                                             aCCAGCATAAATGATCCTGCGCACCAATCACAATCCGTCTCATAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGttt                                                                        <  2:189116/143‑1 (MQ=25)
                                                              ccAGCATAAATGATCCTGCGCACCAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTg                                                                       <  1:787437/143‑1 (MQ=255)
                                                               cAGCATAAATGATGCTGCGCACCAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGa                                                                      <  1:709599/143‑1 (MQ=255)
                                                               cAGCATAAATGATCCTGCGCACCAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGa                                                                      >  2:575141/1‑143 (MQ=255)
                                                                    tAAATGATCCTGCGCACCAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGa                                                                 <  2:44564/143‑1 (MQ=255)
                                                                    tAAATGATCCTGCGCACCAATCAACAACCGTATCAGAATAGATACTCTCCCCCGAATTATTCGTTTTATAAAGGTGGGTACGAATAAGCGAGGGAAGTCTTCTCGGCGGACTCAGTCATTCTATTTCTTCATGTTTGAGCCGa                                                                 >  2:889525/1‑143 (MQ=16)
                                                                     aaaTGATCCTGCGCACCAATCAACAACCGTATCAGAATAGATACTTTCTTTAGCAATTTTTGTTTTATTAAGGAAGGTGCGAACAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGAt                                                                >  2:449699/1‑143 (MQ=255)
                                                                         gATCCTGCGCACCAATCAACAACCGTATCAGAATAGATACTGTCTTTAGGAGTTTTTGTTTTATGAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGAttttt                                                            <  2:735632/143‑1 (MQ=255)
                                                                                 ccACCAAGTAACAACTGTATCAGAATATATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGt                                                    <  2:81104/142‑1 (MQ=255)
                                                                                    cataTCAACATACGTAGCAGAATAGATACTTTCTTTAGGAAGTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTaaa                                                 <  2:28126/140‑1 (MQ=18)
                                                                                     cAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAAt                                                >  1:768544/1‑143 (MQ=255)
                                                                                     cAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGCGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAAt                                                >  2:244345/1‑143 (MQ=255)
                                                                                          gacaatCGGATCATAATAGATACGTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCtt                                           <  2:385444/142‑1 (MQ=255)
                                                                                            cagccGTATCAGAATAGATACCTTCTGTAGTAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGa                                         <  1:526240/140‑1 (MQ=255)
                                                                                             aacCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGaa                                        >  2:436494/1‑143 (MQ=255)
                                                                                             aacCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGaa                                        >  1:99483/1‑143 (MQ=255)
                                                                                                  tATCAGAATAGGTACTTTCTTGAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGc                                   <  1:410571/143‑1 (MQ=255)
                                                                                                       gAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCTGCTTACTCAGTCATTTCATTTCTTGTTGTTTGAGCCCACTTTTTCTCCTGTAAATTTCTTGTATTAGCCtttt                              >  2:885331/1‑143 (MQ=18)
                                                                                                       gAATAGATACTTTCTTGAGGAATTTTTGTTTTCTTAAGGAAGGGGCTAATAAGCGGGGAAGTTATTGTGTGCTGACCCACAAACTTGCGAAATTCCGGTTGGAGCCGATTGTTTCTCCCGTAAATGCCTTGAATCAGCCTAtt                              <  1:424862/143‑1 (MQ=12)
                                                                                                           cgctcctttctttAGGAATTTTTGTTTTCTTAAGGAAGGTGCGCATAAGCGGCGACATTATTTTCGGCTGGCTCAGTCATTTCATTTCTTCATGTTTGAGCCGCTTTTTTCTCCCGGAAATGCCTTGAATCAGCCTATTTAGa                          <  2:447920/138‑1 (MQ=17)
                                                                                                               aCTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTATTCTCGGCTGACTCAGTCACACCATTCCTACACGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGt                      >  1:155790/1‑143 (MQ=17)
                                                                                                                 tttctttAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGATTCAGCCTATTTAGACCGttt                    >  2:824886/1‑143 (MQ=255)
                                                                                                                     tttAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTTAATCAGCCTATTTAGACCGTttcttc                <  2:339181/143‑1 (MQ=255)
                                                                                                                     tttAGGAATTTTGGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATATGTTTTCTTCTTGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTttcttc                <  1:573302/143‑1 (MQ=14)
                                                                                                                       tAGGAATTGTTGTTTTATTAAGGGATGTGATGATAAGCGGGGAGATTCTTCTCGGCTTACTCAGTCATTTCATGTCTTCATGTTTGAGCCGAGTTTTGCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGc              <  2:900555/143‑1 (MQ=14)
                                                                                                                        aGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGcc             >  1:855103/1‑143 (MQ=255)
                                                                                                                        aGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCGATTTAGACCGTTTCTTCGcc             >  1:46199/1‑143 (MQ=255)
                                                                                                                        aGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTATTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGCTTCTTAGcc             >  2:183954/1‑143 (MQ=255)
                                                                                                                        aGGAATTTTTGTTTTATTAAGGAAGGTCCGAATAAGCGAGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGcc             <  2:733972/143‑1 (MQ=255)
                                                                                                                         ggAGTTTTTGTTTTATTAATGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCAAGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCa            <  2:483440/143‑1 (MQ=255)
                                                                                                                                 tGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGc    <  2:861602/143‑1 (MQ=35)
                                                                                                                                 tGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCGTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGc    <  2:450906/143‑1 (MQ=25)
                                                                                                                                   ttttATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCAATTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTCTTTAGACCGTTTCTTCGCCTTTTAAGGCGt  >  1:148755/1‑143 (MQ=255)
                                                                                                                                            |                                                                                                                                     
TTCACAGTACATAAAGTAACCTTGATCGAAGCCATTTACACGCACAAAATCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGT  >  NC_000913/2101609‑2101882

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.