Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	2469139	2469785	647	34 [20]	[21] 25	gtrS	serotype‑specific glucosyl transferase, CPS‑53 (KpLE1) prophage

GACATACATAGGGTTAGTGGTAGCCAGTGTAGCATTTATTTATGGGGCGTGGATGATTTTAGATACTATCATATTTGGAAATGCTGTTAGGGGATATCCTTCACTACTTGTTTCAATACTGTTTTTAGGTGGAATTCAGATGATTGGAATAGGAGTATTAGGTGAATATATTGGACGCACATACATTGAAACCAAAAAACGCCCGAAATACATCATCAAGAGAGTCAAAAAATGAATAAAGCAATAAAAGTATCATTGTATATATCTTTTGTTTTGATTATTTGCGCCTTATCTAAAAACATAATGATGTTAAATACATCTGATTTCGGAAGAGCCATTAAGCCATTAATTGAAGACATACCAGCATTTACATATGACT  >  NC_000913/2468900‑2469278                                                                                                                                                                                                                                               |                                                                                                                                             ggcatacattGGTTTAGTGGTAGCCAGTTTAGCATTTATTTATGGGGCGTGGATTATTTTAGATAATATCATATTTGGAAATGCTGTTAGGGGATATCCTTCACTACTTGTTTCAATACTGTTTTTAGGTGGAATTCAGATGATTGGAATAGGAGTATTAGGTGAATATATTGGACGCACATACATTGAAACCAAAAAACGCCCGAAATACATCATCAAGAGAGTCAAAAAATGAATaa                                                                                                                                              <  2:748261/237‑1 (MQ=255) gactttcattGGGTTTGTGGTTGCCAGTGTAGCATTTATTTATGGGGCGTGGATGATTTTAGATACTATCATATTTGGAAATTCTGGTAGGGGATATCCTTCACTACTTGTTTCAATACTGTTTTTAGGTGGAATTCAGATGATTGGAATAGGAGTATTAGGTGAATATATTGGACGCACATACATTGAAACCAAAAAACGCCCGAAATACATCATCAAGAGAGTCAAAAAATGAATaa                                                                                                                                              <  2:128249/233‑1 (MQ=255) gACATTCATAGGGTTAATGGTAGGCAGTGTAGCATTTATTTATGGGGCGTGGATGATTTTAGATACTATCATATTTGGAAATGCTGTTAGGGGATATCCTTCACTACTTGTTTCAATACTGTTTTTAGGTGGAATTCAGATGATTGGAATAGGAGTATTAGGTGAATATATTGGACGCACATACATTGAAACCAAAAAACGCCTGAAATACATCATCAAGAGAGTCAAAAAATGAATaa                                                                                                                                              <  1:549567/239‑1 (MQ=255) gACATACATAGGGTTAGTGGTAGCCAGTGTAGCATTTATTTATGGGGCGTGGATGATTTTAGATACTATCATATTTGGAAATGCTGTTAGGGGATATCCTTCACTACTTGTTTCAATACTGTTTTTAGGTGGAATTCAGATGATTGGAATAGGAGTATTAGGTGAATATATTGGACGCACATACATTGAAACCAAAAAACGCCCGAAATACATCATCAAGAGAGTCAAAAAATGAATaa                                                                                                                                              <  1:249956/239‑1 (MQ=255)  ggggaaatggggTTAGGGGTAGCCAGTGTAGCATGTATTTATGGGGCGGGGATGAATTTAGATTCTATCAAAATTGGAAAGTCTGGTAGGGGATATCCTTCACTACTGGTTTCAATACGGTTTTTAGGTGGAATTCAGATGATTGGAATAGGAGTATTAGGTGAATATATGGGACGCACATACATTGAAACCAAAAAACGCCAGAAATACATCATCAAGAGAGTCAAAAAATGAATaa                                                                                                                                              <  2:256410/229‑1 (MQ=255)  cttttattaGGTTTAGTGGTAGCAAATTTAGCATTTATTTATGGGGCGTGGATGATTTTAGATACTTTCATATTTGGAAATTCTGGTAGGGGAGATCCTTCACTAATTGTTTCAATACTGTTTTTAGGTGGAATTCAGATGATTGGAATAGGAGTATTAGGTGAATATATTGGACGCACATACATTGAAACCAAAAAACGCCCGAAATACATCATCAAGAGAGTCAAAAAATGAATaa                                                                                                                                              <  2:100181/231‑1 (MQ=255)  aagtacataGGGTTTGTGGTTGCCAGTGTAGCATTTATTTATGGGGCGGGGATGATTTTAGATACTATCATATTTGGAAATGCTGTTAGGGGATATCCTTCACTACTTGTTTCAATACTGTTTTTAGGTGGAATTCAGATGATTGGAATAGGAGTATTAGGTGAATATATTGGACGCACATACATTGAAACCAAAAAACGCCCGAAATACATCATCAAGAGAGTCAAAAAATGAATaa                                                                                                                                              <  2:58658/235‑1 (MQ=255)       cataGGGTTTGTGGTAGTCAGTTGAGCATTTATTTATGGGGCGTGGATGATTTTAGATACTATCAGATTTGGAAATGCTGTTAGGGGATATCCTTCACTACTTGTTTCAATACTGTTTTTAGGTGGAATTCAGATGATTGGAATAGGAGTATTAGGTGAATATATTGGACGCACATACATTGAAACCAAAAAACGCCCGAAATACATCATCAAGAGAGTCAAAAAATGAATAAAGCAAt                                                                                                                                        <  2:1035821/239‑1 (MQ=255)                aGTGGTAGCCAGTGTAGCATTTATTTATGGGGCGTGGATGATTTTAGATACTATCATATTTGGAAATGCTGTTAGGGGATATCCTTCACTACTTGTTTCAATACTGTTTTTAGGTGGAATTCAGATGATTGGAATAGGAGTATTAGTTGAATATATTGGACGCACATACATTGAAACCAAAAAACGCCCGAAATCCATCATCAAGAGCGTCCAAAAATGATTAAATCAATAAAAgctt                                                                                                                                >  1:256410/1‑235 (MQ=255)                aGTGGTAGCCAGTGTAGCATTTATTTATGGGGCGTGGATGATTTTAGATACTATCATATTTGGAAATGCTGTTAGGGGATATCCTTCACTACTTGTTTCAATACTGTTTTTAGGTGGAATTCAGATGATTGGAATAGGAGTATTAGGTGAATATATTGGACGCACATACATTGAAACCAAAAAACGCCCGAAATACATCATCAAGAGAGTCAAAAAATGAATAAAGCAATaaaa                                                                                                                                    >  1:58658/1‑234 (MQ=255)                aGTGGTAGCCAGTGTAGCATTTATTTATGGGGCGTGGATGATTTTAGATACTATCATATTTGGAAATGCTGTTAGGGGATATCCTTCACTACTTGTTTCAATACTGTTTTTAGGTGGAATTCAGATGATTGGAATAGGAGTATTAGGTGAATATATTGGACGCACATACATTGAAACCAAAAAACGCCCGAAATACATCATCAACAGAGTCAAAAAATGAATAAAGCAATaaaa                                                                                                                                    >  1:100181/1‑234 (MQ=255)                            tgtAGCATTTATTTATGGGGCGTGGATGATTTTAGATACTATCATATTTGGAAATGCTGTTAGGGGATATCCTTCACTACTTGTTTCAATACTGTTTTTAGGTGGAATTCAGATGATTGGAATAGGAGTATTAGGTGAATATATTGGACGCACATACATTGAAACCAAAAAACGCCCGAAATACATCATCAAGAGAGTCAAAAAATGAATaa                                                                                                                                              <  1:863895/212‑1 (MQ=255)                                      atttatGGGGCGTGGATGATTTTAGATACTATCATATTTGGAAATGCTGTTAGGGGATATCCTTCACTACTTGTTTCAATACTGTTTTTAGGTGGAATTCAGATGATTGGAATAGGAGTATTAGGTGAATATATTGGACGCACATACATTGAAACCAAAAAACGCCCGAAATACATCATCAAGAGAGTCAAAAAATGAaaaa                                                                                                                                              >  2:639251/1‑202 (MQ=255)                                      atttatGGGGCGTGGATGATTTTAGATACTATCATATTTGGAAATGCTGTTAGGGGATATCCTTCACTACTTGTTTCAATACTGTTTTTAGGTGGAATTCAGATGATTGGAATAGGAGTATTAGGTGAATATATTGGACGCACATACATTGAAACCAAAAAACGCCCGAAATACATCATCAAGAGAGTCAAAAAATGAATaa                                                                                                                                              <  1:639251/202‑1 (MQ=255)                                                 ttGGATGTTTTTAGATACCTTCATATTTGGAAATGCTGGTAGGGTTTATCCTTCACTACTTGTTTCAATACTGTTTTTAGGTGGAATTCAGATGATTGGAATAGGAGTATTAGGTTAATATATTGGACGCACATACATTGAAACCAAAAAACGCCCGAAATACATCATCAAGAGAGTCAAAAAATGAATAAAGCAATAAAAGAATCATTGTATATATCTTTTGTGTTGATTATTTgcg                                                                                               <  2:993608/237‑1 (MQ=255)                                                                    ttaatatTGGGAAATGCTGTTGGGGGATATCCTTCACTACTTGTTTCAATACTGTTTTTAGGTGGAATGCAGATAATTGGAATAGGAAGATTAGGTGAATATATAGGACGCACATACATTGAAACCAAAAAACGCCCGAAATAAATCATCAAGAGAGTCAAAAAATGAATAAAGCAATAAAAGTATCATTGTATATATCTTTTGTTTTGATTATTTGCGCCTTATCTAAAAACATAatg                                                                           <  2:305291/236‑1 (MQ=255)                                                                    aTCATAGTTGGAAATGCTGTTAGGGGATATCCTTCACTACTTTTTTCAATACTGTTTTTAGGTGGAATTCAGATGATTGGAATAGGAGTATTAGGTGAATATATTGGACGCACATACATTGAAACCAAAAAACGCCCGAAATACATCATCAAGAGTGTCAAAAAATGAATAAAGCAATAAAAGTATCATTGTATATATCTTTTGTTTTGATTATTTGCGCCTTATCTAAAAACATAatg                                                                           <  1:575671/239‑1 (MQ=255)                                                                     tCATATTTGGAAATGCTGTTAGGGGATATCCTTCACTACTTGTTTCAATACTGTTTTTAGGTGGAATTCAGATGATTGGAATAGGAGTATTAGGTGAATATATTGGACGCACATACATTGAAACCAAAAAACGCCCGAAATACATCATCAAGAGAGTCAAAAAATGAATaa                                                                                                                                              <  1:836038/171‑1 (MQ=255)                                                                     tCATATTTGGAAATGCTGTTAGGGGATATCCTTCACTACTTGTTTCAATACTGTTTTTAGGTGGAATTCAGATGATTGGAATAGGAGTATTAGGTGAATATATTGGACGCACATACATTGAAACCAAAAAACGCCCGAAATACATCATCAAGAGAGTCAAAAAATGAATaa                                                                                                                                              >  2:836038/1‑171 (MQ=255)                                                                                               tatCCTTCACTTCTTGTTTCAATACTGTTTTTAGGTGGAATTCAGATAATTGGAATAGGAGTATTAGGTGAATATATTGGACGCACATACAGTGAAACCAAAAAACGCCCGAAATACATCATCAAGAGAGTCAAAAAATGAATAAAGCAATAAAAGTATCATTGTATATATCTTTTGTTTTGATTATTTGCGCCTTATCTAAAAACATAATGATGTTAAATACATCTGATTTCGGAag                                                 <  1:610699/238‑1 (MQ=255)                                                                                                        ctactTGTTTCAATACTGTTTTTAGGTGGAATTCAGATGATTGGAATAGGAGTATTAGGTGAATATATTGGACGCACATACATTGAAACCAAAAAACGCCCGAAATACATCATCAAGAGAGTCAAAAAATGAATaa                                                                                                                                              <  1:815476/136‑1 (MQ=255)                                                                                                        ctactTGTTTCAATACTGTTTTTAGGTGGAATTCAGATGATTGGAATAGGAGTATTAGGTGAATATATTGGACGCACATACATTGAAACCAAAAAACGCCCGAAATACATCATCAAGAGAGTCAAAAAATGAATaa                                                                                                                                              >  2:815476/1‑136 (MQ=255)                                                                                                           ctTGTTTCAATACTGTTTTTAGGTGGAATTCAGATGATTGGAATAGGAGTATTAGGTGAATATATTGGACGCACATACATTGAAACCAAAAAACGCCCGAAATACATCATCAAGAGAGTCAAAAAATGAATAAAGCAATaa                                                                                                                                      <  1:303782/141‑1 (MQ=255)                                                                                                           ctTGTTTCAATACTGTTTTTAGGTGGAATTCAGATGATTGGAATAGGAGTATTAGGTGAATATATTGGACGCACATACATTGAAACCAAAAAACGCCCGAAATACATCATCAAGAGAGTCAAAAAATGAATAAAGCAATaa                                                                                                                                      >  2:303782/1‑141 (MQ=255)                                                                                                            ttGTTTCAATACTGTTTTTAGGTGGAATTCAGATGATTGGAATAGGAGTATTAGGTGAATATATTGGACGCACATACATTGAAACCAAAAAAAGCCCGAAATACATCATCAAGAGAGTCAAAAAATGAATAAAGCAATAAAAGTATCATTGTATATATCTTTTGTTTTGATTATTTGCGCCTTATCTAAAAACATAATGATGTTAAATACATCTGATTTCGGAAGagccattaagccat                                   >  1:939518/1‑239 (MQ=255)                                                                                                                           ttttAGGTTGAATTCAGATGATTGGAATAGGAGTATTAGGTGAATATATTGGACGCACATACATTGAAACCAAAAAACGCCCGAAATACATCATCAAGAGAGTCAAAAAATGAATAAAGCAATAAAAGTATCATTGTATATATCTTTTGTTTTGATTATTTGCGCCTTATCTAAAAACATAATGATGTTAAATACATCTGATTTCGGAAGAGCCATTAAGCCATTAATTGAAGACATAc                    <  1:194120/239‑1 (MQ=255)                                                                                                                                ggTTGAATTCAGATTATTGGAATAGGAATATTAGGTGAATATATTGGACGCACATACATTGAAACCAAAAAACGCCCGAAATACATCATCAAGAGAGTCAAAAAATGAATAAAGCAATAAAAGTATCATTGTATATATCTTTTGTTTTGATTATTTGCGCCTTATCTAAAAACATAATGATGTTAAATACATCTGATTTCGGAAGAGCCATTAAGCCATTAATTGAAGACATACCAGCa               <  1:519951/239‑1 (MQ=255)                                                                                                                                             ttatTGAAAAAGGAGTATTAGGTGAAAATATTGGACGCACATAAATTGAAACCAAAAAACCCCCGAAATACATCAGCAAGAGAGTCAAAAAATGAATAAAGCAATAAAAGTATCATTGTATATATCTTTTGTTTTGATTATTTGCGCCTTATCTAAAAACATAATGATGTTAAATACATCTGATTTCGGAAGAGCCATTAAGCCATTAATTGAAGACATACCAGCATTTACATATGACt  <  2:939518/237‑1 (MQ=255)                                                                                                                                                              ttAGGTGAATATATTGGACGCACATACATTGAAACCAAAAAACGCCCGAAATACATCATCAAGAGAGTCAAAAAATGAATAAAGCAATaa                                                                                                                                      >  2:1098072/1‑90 (MQ=255)                                                                                                                                                              ttAGGTGAATATATTGGACGCACATACATTGAAACCAAAAAACGCCCGAAATACATCATCAAGAGAGTCAAAAAATGAATAAAGCAATaa                                                                                                                                      <  1:1098072/90‑1 (MQ=255)                                                                                                                                                                   tGAATATATTGGACGCACATACATTGAAACCAAAAAACGCCCGAAATACATCATCAAGAGAGTCAAAAAATGAATAAAGCAATAAAAGTATCATTGtatat                                                                                                                      >  2:419990/1‑101 (MQ=255)                                                                                                                                                                   tGAATATATTGGACGCACATACATTGAAACCAAAAAACGCCCGAAATACATCATCAAGAGAGTCAAAAAATGAATAAAGCAATAAAAGTATCATTGtatat                                                                                                                      <  1:419990/101‑1 (MQ=255)                                                                                                                                                                            tGGACGCACATACATTGAAACCAAAAAACGCCCGAAATACATCATCAAGAGAGTCAAAAAATGAATAAAGCa                                                                                                                                          >  2:535538/1‑72 (MQ=255)                                                                                                                                                                            tGGACGCACATACATTGAAACCAAAAAACGCCCGAAATACATCATCAAGAGAGTCAAAAAATGAATAAAGCa                                                                                                                                          <  1:535538/72‑1 (MQ=255)                                                                                                                                                                                                                                               |                                                                                                                                             GACATACATAGGGTTAGTGGTAGCCAGTGTAGCATTTATTTATGGGGCGTGGATGATTTTAGATACTATCATATTTGGAAATGCTGTTAGGGGATATCCTTCACTACTTGTTTCAATACTGTTTTTAGGTGGAATTCAGATGATTGGAATAGGAGTATTAGGTGAATATATTGGACGCACATACATTGAAACCAAAAAACGCCCGAAATACATCATCAAGAGAGTCAAAAAATGAATAAAGCAATAAAAGTATCATTGTATATATCTTTTGTTTTGATTATTTGCGCCTTATCTAAAAACATAATGATGTTAAATACATCTGATTTCGGAAGAGCCATTAAGCCATTAATTGAAGACATACCAGCATTTACATATGACT  >  NC_000913/2468900‑2469278

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑