Predicted mutation
evidence	seq id	position	mutation	freq	annotation	gene	description
JC JC	NC_000913	458,790	IS186 (–) +6 bp :: Δ1 bp	52.4%	intergenic (+90/‑93)	clpX → / → lon	ATPase and specificity subunit of ClpX‑ClpP ATP‑dependent serine protease/DNA‑binding ATP‑dependent protease La

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	458790 =	26 (0.480)	25 (0.440)	21/412	NT	48.3%	intergenic (+90/‑98)	clpX/lon	ATPase and specificity subunit of ClpX‑ClpP ATP‑dependent serine protease/DNA‑binding ATP‑dependent protease La
	?	NC_000913	608008 =	NA (NA)					noncoding (2/1345 nt)	IS186	repeat region
*	?	NC_000913	= 458795	24 (0.440)	30 (0.540)	23/410	NT	54.8%	intergenic (+95/‑93)	clpX/lon	ATPase and specificity subunit of ClpX‑ClpP ATP‑dependent serine protease/DNA‑binding ATP‑dependent protease La
	?	NC_000913	= 609351	NA (NA)					noncoding (1345/1345 nt)	IS186	repeat region

ACAATTTGGATGGTAGTCCCTTCTTCGCATGGAGGCAATATAAACATGCTGACGAAATATGCCCTTGCGGCAGTCATAGTGCTGTGTTTAACGGTGCTGGGATTTACGCTTCTGGTCGGAGACTCGCTGTGTGAGTTTACGGTGAAGGAACGTAATATTGAGTTTAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGC‑CCATATTGGTAAGCCCGAAGAACTGGATACTTCGGCACGTAATGCCGGGGCTCTAACCCGCCGCCGCGAAATTCGTGATGCTGCAACTCTGCTACGTCTGGGGCTGGCTTACGGCCCCGGGGGGATGTCAT  >  NC_000913/607791‑608233                                                                                                                                                                                                                          |                                                                                                                                                                                                                                   aCAATTTGGATGGTAGTCCCTTCTTCGCATGGAGGCAATATAAACATGCTGACGAAATATGCCCTTGCGGCAGTCATAGTGCTGTGTTTAACGGTGCTGGGATTTACGCTTCTGGTCGGAGACTCGCTGTGTGAGTTTACGGTGAAGGAACGTAATATTGAGTTTAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCt                                                                                                                                                                                                                         <  1:429266/229‑1 (MQ=255)           tGGTAGTCCCTTCTTCGCATGGAGGCAATATAAACATGCTGACGAAATATGCCCTTGCGGCAGTCATAGTGCTGTGTTTAACGGTGCTGGGATTTACGCTTCTGGTCGGAGACTCGCTGTGTGAGTTTACGGTGAAGGAACGTAATATTGAGTTTAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAggg                                                                                                                                                                                                               <  1:493128/229‑1 (MQ=255)              tttttctttctgcGTATGGAGTCAATATAAACATGTTGACGAAATATGCCCTTGCGGCATCCATAGTGCTGTGTTTAACGGTGCTGGGATTTACGCTTCTGGTCGGAGACTCGCTGTGTGAGTTTACGGTGAAGGAACGTAATATTGAGTTTAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTtg                                                                                                                                                                                                            <  2:692698/222‑1 (MQ=255)              tAGTCCCTTCTTCGCATGGAGGCAATATAAACATGCTGACGAAATATGCCCTTGCGGCAGTCATAGTGCTGTGTTTAACGGTGCTGGGATTTACGCTTCTGGTCGGAGACTCGCTGTGTGAGTTTACGGTGAAGGAACGTAATATTGAGTTTAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTtg                                                                                                                                                                                                            <  1:385347/229‑1 (MQ=255)                                                 cTGACGAAATATGCCCTTGCGGCAGTCATAGTGCTGTGTTTAACGGTGCTGGGATTTACGCTTCTGGTCGGAGACTCGCTGTGTGAGTTTACGGTGAAGGAACGTAATATTGAGTTTAAGGCTGTTCTCGCTTACGAACCGAAGCAGAAGCCGTTGTGCGGGGGGTAATCCCATAATCGCTAACTTAAGGGTTGTGGGATTACGCCTGATTTAGTTTAACAGGCCGAt                                                                                                                                                                          >  2:707139/1‑228 (MQ=255)                                                 cTGACGAAATATGCCCTTGCGGCAGTCATAGTGCTGTGTTTAACGGTGCTGGGATTTACGCTTCTGGTCGGAGACTCGCTGTGTGAGTTTACGGTGAAGGAACGTAATATTGAGTTTAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGGCTTACCGCTGATATGATTTAACGTGCCGATg                                                                                                                                                                         >  1:514753/1‑229 (MQ=255)                                                    aCGAAATATGCCCTTGCGGCAGTCATAGTGCTGTGTTTAACGGTGCTGGGCTTTACGCTTCTGGTCGGAGACTCGCTGTGTGAG‑TTACGGTGAAGGAACGTAATATTGAGTTTAAGGCTGTTCTCGCTTACGAACCGAGAAAGTAACCGTTGTGCGGGGAGTAATCCCATAAACCCTAACTTAAAGGGTGTGGTATTACGCCTGATATGAGTTAAAGAGCCGTTAAAta                                                                                                                                                                     >  2:41846/1‑228 (MQ=255)                                                          tatGCCCTTGCGGCAGTCATAGTGCTGTGTTTAACGGTGCTGGGATTTACGCTTCTGGTCGGAGACTCGCTGTGTGAGTTTACGGTGAAGGAACGTAATATTGAGTTTAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTActct                                                                                                                                                                >  2:600341/1‑229 (MQ=255)                                                              cccTTGCGGCAGTCATAGTGCTGTGTTTAACGGTGCTGGGATTTACGCTTCTGGTCGGAGACTCGCTGTGTGAGTTTACGGTTAAGGAACGTAATATTGAGCTTAAGGCAGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGAGCGGGGAGTAATCCCATAAGCGCCAACTTAACGGTTGTGGAATTACGCCTGATATGATTTAACGTGCCGATAAATTAACCTCagg                                                                                                                                                            >  2:372207/1‑227 (MQ=38)                                                                  tGCGGCAGTCATAGTGCTGTGTTTAACGGTGCTGGGATTTACGCTTCTGGTCGGAGACTCGCTGTGTGAGTTTACGGTGAAGGAACGTAATATTGAGTTTAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGGTGAATCCCCTAAGCGCTAACTTAAGGGTTGTGGGATTACGCCTGATATGATTTAACGTGCCGAGGAATTACTCTCACGATaa                                                                                                                                                        >  1:750635/1‑229 (MQ=255)                                                                  tGCGGCAGTCATAGTGCTGTGTTTAACGGTGCTGGGATTTACGCTTCTGGTCGGAGACTCGCTGTGTGAGTTTACGGTGAAGGAACGTAATATTGAGTTTAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGAGCTAACTTACGGGTTGTGGTATTATGCCTGATCAGATTTAACGTGCCGATGAATTACTTTCACGCTaa                                                                                                                                                        >  1:72390/1‑229 (MQ=255)                                                                      gCAGTCATAGTGCTGTGTTTAACGGTGCTGGGATTTACGCTTCTGGTCGGAGACTCGCTGTGTGAGTTTACGGTGAAGGAACGTAATATTGAGTTTAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTTCAACGGTAACTgg                                                                                                                                                    >  1:25187/1‑229 (MQ=255)                                                                                tGCTGTGTTGAACGGTGCTGGGATTTACGCGTATGGTCGGAGACGCGCTGTGTGAGTTTACGGTGAAGGAACGTAATAATGAGTTTAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAAtt                                                                                                                                           <  1:288975/228‑1 (MQ=255)                                                                                   tttttttAACGGGGTGGGGATTTACGCTTCTGGTTGGGGACTCGCTGTGTGAGTTTACGGTGAAGGAACGTAATATTGAGTTTAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTg                                                                                                                                        <  2:209922/224‑1 (MQ=255)                                                                                    gtgtTTAACGGTGCTGGGATTTACGCTTCTGGTCGGAGACTCGCTGTGTGAGTTTACGGTGAAGGAACGTAATATTGAGTTTAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGGTGAATCCCCTAAGCGCTAACTTAAGGGTTGTGGTATTACGCCGGCTATGATTTAACGGGCCGATGAATAATTTTCACGTAAAATGGTAGGCAATTCTGGc                                                                                                                                      >  2:602515/1‑229 (MQ=37)                                                                                     tgtTTAACGGTGCTGGGATTTACGCTTCTGGTCGGAGACTCGCTGTGTGAGTTTACGGTGAAGGAACGTAATATTGAGTTTAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCCTAAGCGCTAACTTAAGGGGTGTGGTATTACGCCTGGTATGATTTAACGTGCCGATGAATTACTCTCCCGATAACTGGTCACAAATTCTgggc                                                                                                                                     >  2:129084/1‑227 (MQ=255)                                                                                     tctttaagtgggCTGGGATTTACGTTTCTGGTCGGAGACTCGTTGTGTGAGTTTACGGTGAAGGAACGTAATGTTGAGTTGAAGGCTGTGCCCGCTTACGAACCGAAGAAGTAGGCGTTGTGCGGGGAGTAATCCCATAAGCGATAACTTAAGGGTTGTGGTATGACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGc                                                                                                                                      <  1:343843/217‑1 (MQ=25)                                                                                          aaCGGTGCTGGGATTTACGCTTCTGGTCGGAGACTCGCTGTGTGAGTTTACGGTGAAGGAACGTAATATTGGGTTTAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCCTAAGGGCTAACTTAAGGGTTGGGGGATTAGGCCTGAAATACTTTAACGTGCCGATGATTTACTTTCCGGTAAACTGTCTAGCAATTTAGCC‑CCatat                                                                                                                               >  2:96622/1‑229 (MQ=255)                                                                                          aaCGGTGCTGGGATTTACGCTTCTGGTCGGAGACTCGCTGTGTGAGTTTACGGTGAAGGAACGTAATATTGAGTTTAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGC‑CCatat                                                                                                                               >  1:639703/1‑229 (MQ=255)                                                                                               tGCTGGGATTTACGCTTCTGGTCGGAGACTCGCTGTGTGAGTTTACGGAGAAGGAACGTAATATTGAGTTTAAGGCTGTTCTCGCTTACGAACCGAAGAAGAAGCCGTTGTGCGGGCAGTAAGCCCATAAGCGCTAACTTAAGGATTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTTGC‑CCGTATTGGTa                                                                                                                          >  1:538334/1‑229 (MQ=255)                                                                                                 cTGGGATTTACGCTTCTGGTCGGAGACTCGCTGTGTGAGTTTACGGTGAAGGAACGTAATATTGCGTTTAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGTATTTAGGCCGGATATGCTTAAAGTGGCGGTTGAATTACTTCCACGTTAACTGGTAAGC‑ATTTTGGCGCCAAATTGGTaac                                                                                                                        >  1:38312/1‑228 (MQ=255)                                                                                                 cTGGGATTTACGCTTCTGGTCGGAGACTCGCTGTGTGAGTTTACGGTGAAGGAACGTAATATTGAGTTTAAGGCTGTTCTAGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGCTGTGGTATTACGCCTGATCTGATTTAACGTGCCGTTGAATTACTCTCACGTCACCTGGTCCGAAATTTCGGC‑CCacttaggaaac                                                                                                                        >  2:145193/1‑219 (MQ=255)                                                                                                       tttACGCTTCTGGTTGGAGACTCGCTGTGTGAGTTTACGGGGAAGGAACGTAATATTGAGGTTAAGGCTGTTATCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGC‑CCATATTGGTAAGCCCgaa                                                                                                                  <  1:129084/229‑1 (MQ=255)                                                                                                         tACGCTTCTGGTCGGAGACTCGCTGTGTGAGTTTACGGTGAAGGAACGTAATATTGAGTTTAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGCTTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGC‑CCATATTGGTAAGCCGgacga                                                                                                                >  1:165214/1‑229 (MQ=255)                                                                                                         tACGCTTCTGGTCGGAGACTCGCTGTGTGAGTTTACGGTGAAGGAACGTAATATTGAGGTTAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAATCGCTAACTTCAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCCATGAATTACTTTCACGAAAAATGGTCCGCAATTTTGGC‑CCATATTGGTAAACCCgaa                                                                                                                  >  2:536755/1‑227 (MQ=37)                                                                                                             ttgttGGTCGGTGTGTCGGTGTGTGAGTTTCAGGTGAAGAGACGTAAGATTGAGTTTAAGGCGTTTCTCGCTTACGAACCTAAGAAGTAGCCTTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTGGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGC‑CCATATTGGTAAGCCCGAAGAACt                                                                                                             <  2:98379/224‑1 (MQ=18)                                                                                                               tCTGGTCGGAGGCTCGCTGTGTGAG‑TTACGGTGAAGGAACGTAATATTGAGTTTAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGC‑CCATATTGGTAAGCCCGAAGAACTGGa                                                                                                          <  1:41846/228‑1 (MQ=255)                                                                                                                        agaCTCGCTGTGTGAGTTTACGGTGAAGGAACGTAATATTGAGTTTAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGC‑CCATATTGGTAAGCCCGAAGAACTGGATACTTCGGc                                                                                                 >  1:476157/1‑229 (MQ=255)                                                                                                                            tCGCTGGGTGAGTTTACGGTGAAGGAACGTAATATTGAGTTTAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGC‑CCATATTGGTAAGCCCGAAGAACTGGATACTTCGGCACGt                                                                                             <  1:600342/229‑1 (MQ=255)                                                                                                                                    tgAGTTTACGGTGAAGGAACGTAATATTGAGTTTAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGC‑CCATATTGGTAAGCCCGAAGAACTGGCTACTTCGGCACGTAATTCCg                                                                                      >  1:561942/1‑228 (MQ=255)                                                                                                                                    tgAGTTTACGGGGAAGGAACGTAATAGTGAGTTTAAGGCTGTTCTCGCTGACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGC‑CCATATTGGTAAGCCCGAAGAACTGGATACTTCGGCACGTAATGCCg                                                                                      <  1:602516/228‑1 (MQ=255)                                                                                                                                          tACGGTGAAGGAACGTAATATTGAGTTTAAGGCTGTTCTCGCTTAAGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGAAATTCTGGC‑CCATATTGGTAAGCCCGAAGAACTGGATACTTCGGCACGTAATGCCGGGGctg                                                                                >  2:483698/1‑227 (MQ=255)                                                                                                                                                       cGTAATATTGAGTTTAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTATGGC‑CCATATTGGTAAGCCCGAAGAACTGGATACTTCGGCACGTAATGCCGGGGCCCTAACCcgcggccgc                                                                  >  1:558621/1‑229 (MQ=255)                                                                                                                                                                 aGTTTAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGC‑CCata                                                                                                                                >  1:535529/1‑157 (MQ=255)                                                                                                                                                                 aGTTTAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGC‑CCata                                                                                                                                <  2:535529/157‑1 (MQ=255)                                                                                                                                                                   tttAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGAt                                                                                                                                                                          >  1:248864/1‑114 (MQ=255)                                                                                                                                                                   tttAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGAt                                                                                                                                                                          <  2:248864/114‑1 (MQ=255)                                                                                                                                                                   tttAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGC‑CCATATTGGTAAGCCCGAAGAACTGGATACTTCGGCACGTAATGCCGGGGCTCTAACCCGCCGCCGCGAAATTCGTg                                                        >  1:721357/1‑227 (MQ=255)                                                                                                                                                                       aggtttgtctcGCTTACGACCCGAATAAGGTGCTGTTGTGCGGGGAGTAATCCCTTAAGGGCTAACTTAAGGGTTGGTGTATTACGCCTGATATGATTTAACGTGCCGAGGAATTACTCTCACGATAACTGGTCAGCAATTCTGGC‑CCATATTGGTAAGCCCGAAGAACTGGATACTTCGGCACGTAATGCCGGGGCTCTAACCCGCCGCCGCGAAATTCGTGAtgctg                                                  <  2:750634/222‑1 (MQ=14)                                                                                                                                                                       aGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGC‑CCATATTGGTAAGCCCGAAGAACTGGATACTTCGGCACGTAATGCCGGGGCTCTAACCCGCCGCCGCGAAATTCGTGAtgctg                                                  <  1:96622/229‑1 (MQ=255)                                                                                                                                                                             ttCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGGTAACTGGTCAGCAATTCTGGC‑CCCTATTGGTAAGACCGAAGAACTGCATACTTCTGCCCGTAATGCCGGGGCTCTAACCCGCCGCCGCGAAATCCGGGGTGCTGAAActc                                            >  2:525174/1‑229 (MQ=17)                                                                                                                                                                             ttCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGC‑CCATATTGGTAAGCCCGAAGAACTGGATAATTCGGCACGTAAACCCGGGGCTCTAACCCGCCGCCGCGAAATTCGTGAGGCGGCAAatc                                            >  2:273644/1‑229 (MQ=255)                                                                                                                                                                               ctcGCTTAGCAACCGAAGAAGTCACTGTTGTGCGGGGAGTAACACCATAAGGCCTACGTTAAGGTTTTTGGTTTTACGCCTGATATGAATTAACGTTCCGATGAATTACTCTCACGATAACTGGTCAGAAATACTGGC‑CCTTATTGGTAAGCCCGAAGAACTGGATGCGACGGCACGTAATGCCGGGGCTCTACCCGGCCGCCGCGAAATTCGTGATGCTGCAACTCTg                                          <  2:538334/229‑1 (MQ=14)                                                                                                                                                                                 cGCTTACGAACCGAAGAAGTAGCCTTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGGGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGC‑CCATATTGGTAAGCCCGAAGAACTGGATACTTCGGCACGTAATGCCGGGGCTCTAACCCGCCGCCGCGAAATTCGTGATGCTGCAACTCTGCt                                        <  1:707140/229‑1 (MQ=255)                                                                                                                                                                                   cTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGGCAGCAATTCTGGC‑CCATATTGGTAAGCCCGAAGAACTGGATACTTCGGAACGAAATGCCGGGGCTCTAACCCGCCCCCGCGAAATTCGGGATGCTGAAACCCTGCTat                                      >  2:661157/1‑228 (MQ=255)                                                                                                                                                                                                         gTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTTGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGA‑CCATATTGGTAAGCCCGAAGAACTGGATACTTCGGCACGTAATGCCGGGGCTCTAACCCGCCGCCGCGAAATTCGTGATGCTGCAACTCTGCTACGTCTGGGGCTGGCTTACGGcc                 <  1:261907/228‑1 (MQ=37)                                                                                                                                                                                                                ggggAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATGCTGGC‑CCATATTGGTAAGCCCGAAGAACTGGATACTTCGGCACGTAATGCCGGGGCTCTAACCCGCCGCCGCGAAATTCGTGATGCTGCAACTCTGCTACGTCTGGGGCTGGCTTACGGCCCCgggggg         <  1:273644/229‑1 (MQ=21)                                                                                                                                                                                                                    aGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGC‑CCATATTGGTAAGCCCGAAGAACTGATTACTTCGGCACGTAATGCCGGGGTCCTAACCCGCCGCCCGGAAATTCGGGATGCTGCAACCCTGCTGCGTCTGGGCTTGGCTTCCGGCCCCgggggggggc     >  2:487933/1‑225 (MQ=11)                                                                                                                                                                                                                       aaTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGC‑CCATATTGGTAAGCCCGAAGAACTGGATACTTCGGCACGTAATGCCGGGGCTCTAACCCGCCGCCGCGAAATTCGTGATGCTGCAAc                                              >  1:286623/1‑185 (MQ=31)                                                                                                                                                                                                                       aaTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGC‑CCATATTGGTAAGCCCGAAGAACTGGATACTTCGGCACGTAATGCCGGGGCTCTAACCCGCCGCCGCGAAATTCGTGATGCTGCAAc                                              <  2:286623/185‑1 (MQ=31)                                                                                                                                                                                                                       aaTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGC‑CCATATTGGTAAGCCCGAAGAACTGGATACTTCGGAACGTAATGCCGGGGCTCTAACCCGCCGCCGCGAAATTCGTGATGTTGCAACTCTGCTACGCCTGGGGCTGGCTTACGGCCCCGGGGGGATGtact  >  2:52513/1‑226 (MQ=2)                                                                                                                                                                                                                          |                                                                                                                                                                                                                                   ACAATTTGGATGGTAGTCCCTTCTTCGCATGGAGGCAATATAAACATGCTGACGAAATATGCCCTTGCGGCAGTCATAGTGCTGTGTTTAACGGTGCTGGGATTTACGCTTCTGGTCGGAGACTCGCTGTGTGAGTTTACGGTGAAGGAACGTAATATTGAGTTTAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGC‑CCATATTGGTAAGCCCGAAGAACTGGATACTTCGGCACGTAATGCCGGGGCTCTAACCCGCCGCCGCGAAATTCGTGATGCTGCAACTCTGCTACGTCTGGGGCTGGCTTACGGCCCCGGGGGGATGTCAT  >  NC_000913/607791‑608233

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.