| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| MC JC | NC_000913 | 257,908 | Δ776 bp | 100% | [crl] | [crl] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 257908–258675 | 258683 | 9–776 | 76 [0] | [0] 75 | [crl] | [crl] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 257907 | 0 (0.000) | 70 (1.280) | 51/402 | NT | 100% | intergenic (+8/‑769) | crl/crl | pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator;regulator; Surface structures; transcriptional regulator of cryptic csgA gene for curli surface fibers/pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator;regulator; Surface structures; transcriptional regulator of cryptic csgA gene for curli surface fibers |
| ? | NC_000913 | 258684 = | 0 (0.000) | pseudogene (9/331 nt) | crl | pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator;regulator; Surface structures; transcriptional regulator of cryptic csgA gene for curli surface fibers | |||||
CCGGGTTGAGAAGCGGTGTAAGTGAACTGCAGTTGCCATGTTTTACGGCAGTGAGAGCAGAGATAGCGCTGATGTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGAAGGTAAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGTTTTACC‑TACAGTTACCAGTTTGGTCTGTTCGATAAAGCAGGCGACTGGAAGAGTGTTCCGGTAAAAGACACTGAAGTGGTTGAACGACTGGAGCACACCCTGCG > NC_000913/258469‑258906 | cccatttaacccggtgtatcggaattttgacaaaggtcttcaggaaatcaccgactggatcgaaaaacgcttgtgttaaaaatttgctaaattttgccaatttggtaaaacagttgcatcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgagggaaAGGGCAAAGTTAAt > 1:30605‑M2/216‑229 (MQ=255) acccggtgtatcggaattttgacaaaggtcttcaggaaatcaccgactggatcgaaaaacgcttgtgttaaaaatttgctaaattttgccaatttggtaaaacagttgcatcacaacaggagatagcaatgacgttaccgagtggacacccgaaaagcagattgatcaaaaaatttaccgcacagggcgcgtataatcgagaaggaaAGTGAAAAAAAAAACAATTCtt > 2:306142‑M2/208‑229 (MQ=255) cccggtgtatcggaattttgacaaaggtctacaggaaatcaccgactggatcgaaaaacgcttgtgttaaaaatttgctaaattttgccaatttggtaaaacagttgcatcacaacaggcgatagcaatgacgttaccgagtggacaccagaagaccagattgatcaaaaaaattacagcactaggcccgtatatccgtgtaggaaAGTGCAAAATAAATCGAATCttt > 2:19405‑M2/207‑229 (MQ=255) gtgtatcggaattttgacaaaggtcttcaggaaatcaccgactggatcgaaaaacgcttgtgttaaaaatttgctaaattttgccaatttggtaaaacagttgcatcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaagggaAGTGCAAAGATAATCGATTCttttt > 1:441482‑M2/203‑227 (MQ=255) tgtatcggaattttgacaaaggtcttcaggaaatcaccgacttgatcgaaaaacgcttgtgttaaaaatttgctaaattttgccaatttggaaaaacagttgcatcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccacactaggcccgtatattagtgaaggtaAGTGCAAAGATAATCGATTCttttt > 1:756517‑M2/202‑226 (MQ=255) tgtatcggaattttgacaaaggtcttcaggaaatcaccgactggatcgaaaaacgcttgtgttaaaaatttgctaaattttgccaatttggtaaaacagttgcatcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgccctaggcccgaaaattcgtgaaggtaAGTGCAAAAATAACCAATTCTTTttcac > 2:723822‑M2/202‑227 (MQ=255) atttttgacaaaggttgttaggaaagccccgtctggatcgaaaaacggttgttttaaaaatttgctaaatttggccaatttggtaaaacaggtgcatcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTgg < 2:329285‑M2/36‑1 (MQ=255) attttaaaaaagggtgtcaggaaaacaccgacttgatcgaaaaacggttgtgttaaaaatttgctaaattttgccaatttggtaaaacagttgcatcacaacaggagaaagaaatgacgttaccgagtggacgcccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTgg < 2:395760‑M2/36‑1 (MQ=255) ttttgacaaaggtcttcaggaaatcaccgactggatcgaaaaacgcttgtgttaaaaatttgctaaattttgccaatttggtaaaacagttgcatcacaacaggagatatcaatgacgttaccgagtggacacccgcagagcagattggtcaaaaaaattaccgcactaggcccgtatattcgggaaggtaAAGGCAAAGATAATCGATTCTTTttcgattggcatggt > 2:219906‑M2/192‑222 (MQ=255) ttttgacaaaggtcttcaggaaatcaccgactggatcgaaaaacgcttgtgttaaaaatttgctaaattttgccaatttggtaaaacagttgcatcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaagttaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCt > 1:204846‑M2/192‑229 (MQ=255) ttttgacaaaggtcttcaggaaatcaccgactggatcgaaaaacgcttgtgttaaaaatttgctaaattttgccaatttggtaaaacagttgcatcacaacaggagatagcaatgacgttaccgagtggacacccgaaaagcagattgatcaaaaaatttaccgcacaaggcccgtatattcgggaaggacAGTGCAAAGATAATCGATTCTTTTTcgattgttgggcg > 2:73123‑M2/192‑223 (MQ=255) ttttgacaaaggtcttcaggaaatcaccgactggatcgaaaaacgcttgtgttaaaaatttgctaaattttgccaatttggtaaaacagttgcataacaacaggagatagcaatgccgttaccaagtggacacccgaagagcaaattgatacaaaaatttacccacctaggcccggtaattcggcaagtaaAGAGAAAAGATAATCAATACTttttcgatgttttgt > 2:599020‑M2/192‑220 (MQ=255) ttttgacaaagggcttaagaaaatccccgactggatccaaaaacgcttgtgttaaaaaattgctaaattttgccaatttggtaaaacagttgcatcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTgg < 1:599021‑M2/36‑1 (MQ=255) gaaaaaggtctgcaggaaaacactgacgtgatcgaaaaacgattctgttaaaaattgtgtaaattttgccaatttggtaaaacaggtgctgaacaacaggagatagcaattacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTAt < 1:734889‑M2/42‑1 (MQ=255) aaggtcttcaggaaatcaccgactggatcgaaaaacgcttgtgttaaaaatttgctaaattttgccaatttggtaaaacagttgcatcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgccctaggcccgcatattcgtgaagggaAGTGCAAAGATAATCGATTCTTTTTCGATTTTCTGGCTGAATGGGt > 2:558258‑M2/184‑229 (MQ=255) ggaaatccccgacttgatcgaaaaacgcgtgggttaaaaatttgctaaattttgccaatttgggaaaacagttgcatcacaacaggagatagcaatgacgttaccgagtggacaccagaagagcagattgatcaaaaaatttaccgcactaggtccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGaaa < 2:448530‑M2/56‑1 (MQ=255) atcaccgactggatcgaaaaacgcttgtgttaaaagtttgctaaattttgccaatttggtaaaacagttgcaacacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaattttccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATGCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAAcc < 1:342054‑M2/58‑1 (MQ=255) atcaccgactggatcgaaaaacgcttgtgttaaaaatttgctaaattttgccaatttggtaaaacagttgcatcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagcttgatcaaaaaatttaccgcactaggcccgtatattcgtgacggtaAGTCCAAAGAAAATCGATTCTTTTTCTATTGTCTGGCTGTATGCGTCAACGTGAAACAgg > 1:270038‑M2/170‑229 (MQ=255) ctggatcgaaaaacgcttgtgttaaaaatttgctaaattttgccaatttggtaaaacagttgcatcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCgg < 1:405911‑M2/66‑1 (MQ=255) atcgaaaaacgcttgtgtaaaaaatttgctaaattttgccaatttgggaaaacagttgcatcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGc < 1:73123‑M2/72‑1 (MQ=255) cgaaaaacgcttgtgttaaaaatttgctaaattttgccaatttggtaaaacagttgcatcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGt < 2:204846‑M2/74‑1 (MQ=255) gaaaaacgcttgtgttaaaaatttgctaaatttggccaatttggtaaaacagttgcatcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTg < 1:194973‑M2/75‑1 (MQ=255) cgcttgtgttaaaaatttgctaaattttgccaatttggtaaaacagttgcatcacaacaggagatagcaatgacgttaccgagtggaaacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggcaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGaatttt > 2:308843‑M2/149‑227 (MQ=255) tttgttaaaaatttgctaaattttgccaatttggtaaaacagttgcataccaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTgggg < 2:312985‑M2/85‑1 (MQ=255) aaatttgcaaaattttgccaatttggtaaaacagttgcatcacaacaggagatagcaatgactttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGtgga < 1:610890‑M2/93‑1 (MQ=255) aatttgctaaattgtgctaatttggtaaaacagttgcatcacaacaggaaatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaagttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGtggat < 1:306142‑M2/94‑1 (MQ=255) tgctaaattttgccaatttggtaaaacagttgcatcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAg > 1:167614‑M2/132‑229 (MQ=255) tgctaaattttgccaatttggtaaaacagttgcatcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGACCCGGAAATGCGGGCATTCTGGGGCTGTGGGATGGAg > 1:90923‑M2/132‑229 (MQ=255) gctaaattttgccaatttggtaaaacagttgcatcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaTGTGCAAAGATAATCGACTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGAACCGGAAGTGCGTGACTTCTGGGGCAGGGGggaggagg > 2:240505‑M2/131‑228 (MQ=255) ttgggaaaacagtggcatcacaacaggaaaaagcaatgactttaccgagtggacccccaaagagcagattgatcaaaaaagttaccgccctaggcccttatattcgtgaaggtaAGTGCAAAGATAAGCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATc < 2:270038‑M2/115‑1 (MQ=255) aaaacagttgcatcacaacaggagatagcaatggcgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGtt < 1:79739‑M2/120‑1 (MQ=255) cagttgcaacacaacaggagattgcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGTTTTAc < 1:617844‑M2/124‑1 (MQ=255) tttcatcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTgggg < 2:79893‑M2/85‑1 (MQ=255) ttgcatcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATACTCGATTCTTTTTCGCTTGTCTGGCTGTATTCTTCAACTTGAAACCGGCACCGGAAGTGCGGCAATTCTGGGGGTGGTGGGTGGGGCCGGAAGCCACGGAATCCGGTTTtaccct > 2:536427‑M2/103‑227 (MQ=255) ttgcatcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTgggg > 1:79893‑M2/103‑187 (MQ=255) ctcataacaggagatagacatgacgttaccgggtggacacccgaagaggagaatgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGTTTTACC‑TACAGt < 1:387842‑M2/131‑1 (MQ=255) cacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGTTTTACC‑TACAGTTa < 1:161729‑M2/133‑1 (MQ=255) cacaaaaggggatagcaatggcgttaccgagtgaacccccgaagagcagattgataaaaaaatttaccgcactagggccgtatattcggtaaggtaAGTGCAAAGATAATCGATTATTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGTTTTACC‑TACAGTTa < 2:368917‑M2/133‑1 (MQ=255) acaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtctattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACTTGAAACCGGCACCGGACGTGCGTGAATTCTGGGGATGGTGAATGGAGCTGGACGCGCAGGAATCCCGTTTTACC‑TCAAGttcccgg > 1:397595‑M2/93‑227 (MQ=255) caggagaaaagaatgactttaccgtgtggcaacccgaagagcagagtgaacaaaaaatttaccgtactaggcccgtatattcgtgaaggtaAGTGCAAAGCTAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGTTTTACC‑TACAGTTACCAGt < 2:756516‑M2/138‑1 (MQ=255) gatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGTTTTACC‑TACAGTTACCAGTTTGGt < 1:723823‑M2/143‑1 (MQ=255) tagacatgacggtaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGGCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGTTTTACC‑TACAGTTACCAGTTTGGt < 1:624148‑M2/143‑1 (MQ=255) agcaatgacgttaccgagtggacccccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGTTTTACC‑TACAGTTACCAGTTTGGTCTg < 1:558259‑M2/146‑1 (MQ=255) agcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGGGGATGGAGCTGGAAGCGCAGGAATCCCGTTTTACC‑TACAGTTACCAGTTTGGGCTg > 1:569779‑M2/84‑229 (MQ=255) ttaccgggtggacaaccgaagaaaggattggtcaaaaaatttaccgcaataggcccggatattcgtgaaggtaAGTGCAAAGATAATCGATTCTGTTTCGATTGTCTGGCTGTATGCGACAACGTGAAACCGGCACTGGAAGTGCGTGAATGCTGGGGCTGGTTGATGGAGCTGGAAGCGCAGGAATCCCGTTTTACC‑TACAGTTACCAGTTTGGTCTGTTCGATAAAg < 1:422172‑M2/156‑1 (MQ=255) accgagtggacacccgaagagccgattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTTTGGGGCTGGTGGATGGAGCTGGAAGGGCAGGAATCCCGTTTTACC‑TACAGTTACCATGTTGGTCTGTTTgataaaaga > 2:158591‑M2/72‑226 (MQ=255) cgagtggacaccgtaagaggagattgaacaaaaaatttgccgcactaggacctgatattggtgaaggtaAGTGCAAAGATAATCGAGTCTGTGGCGAGTGTCTGGCTGTATGCGTCAGCGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGTTTTACC‑TACAGTTACCAGTTTGGTCTGTTCGATAAAGCAg < 1:717457‑M2/159‑1 (MQ=255) aggtggacacccgaagggcaggtttaataaaaaatttcccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGTTTTACC‑TACAGTTACCAGTTTGGTCTGTTCGATAAAGCAGGc < 2:724441‑M2/161‑1 (MQ=255) gtggacgcccgaaaagcagattgatcaaaaaatttaccgcactaggcccgtatcttcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGCTTGTCTGGCTGTATGGGTCAACGTGAAACCGGAACCGGAAGTGCGTGAAGTCTGGGGCTGGTGGATGGGGCTGGTAGAGCCGGAATCCCGTTTTACC‑TCCAGTTACAAGTTTGGGGTGTGCGGTAAAGAAGgaga > 2:145968‑M2/67‑229 (MQ=255) tggacaccctaagagcaaattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGTTTTACC‑TACAGTTACCAGTTTGGTCTGTTCGATAAAGCAGGCGAc < 1:222189‑M2/164‑1 (MQ=255) tggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGTTAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGACGCGCAGGAATCCCGTTTTACT‑TACAGTTACCAGTTTGGTCTGTTCGATAAAGCAGGCGAc > 1:420756‑M2/66‑229 (MQ=255) tggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTCCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGTTTTACCTTACA‑TTTCCAGTTTGGTCTGTTCGTAAAAACAgacgac > 2:243471‑M2/66‑229 (MQ=255) gggaaccccgaagagcaggttgatcaaaaaatttaccgcacttggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGTTTTACC‑TACAGTTACCAGTTTGGTCTGTTCGATAAAGCAGGCg < 2:441482‑M2/162‑1 (MQ=255) gggcaaatttatcaaaaaatttaccgcactaggcccgtatattcgggaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTAGGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCGGGAAGCGCAGGAATCCCGTTTTACC‑TACAGTTACCAGTTTGGTCTGTTCGATAAAGCAGGCGACTGGAAGAgtgt < 1:240505‑M2/175‑1 (MQ=255) gattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGTTTTACC‑TACAGTTACCAGTTTGGTCTGTTCGATAAAGCAGGCGACTGGAAGAGAGTTcc > 1:187490‑M2/49‑226 (MQ=255) ttatcaaaaaatttaccgcaatgggcccgtgttttgctgaaggtaAGTGAAAAGATAATCGGTTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGTTTTACC‑TACAGTTACCAGTTTGGTCTGTTCGATAAAGCAGGCGACTGGAAGAGTGTTCCGGTaaa < 2:619917‑M2/184‑1 (MQ=255) gatcaaaaaattgaccgtactaggcccgtattagcgggaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGGCGGGCTGTATGCGTCAACGTGAAACCGGAATCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGTTTTACG‑TACAGTTACCAGTTTGGTCTGTTCGATAAAGCAGGCGACTGGAAGAGTGTTCCGGTaaa < 1:655816‑M2/184‑1 (MQ=255) tcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGTTTTACC‑TACAGTTACCAGTTTGGTCTGTTCGTTAAAGCAGGCGACTGGAAGAGTGTTCCGGTAAAagc > 1:31257‑M2/43‑228 (MQ=255) aaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGAGGATGGAGCTGGAAGCGCAGGAATCCCGTTTTACC‑TACAGTTACCCGTTTGGTCTGTTCGATAAAGCAGGCGACTGGCAGAGTGTTCCGGGAAAAGACCCTg > 1:431104‑M2/38‑229 (MQ=255) taccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGTATACCGTTTTACC‑TACAGTTACCAGGTTGGTCTGTTCGATAAAGCAGGCGACTCGAAGAGTGTTCCGGTAAAAGACACTGCAGTg > 1:333341‑M2/33‑229 (MQ=255) taccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGTTTTACC‑TACAGTTACCAGTTTGGTCTGTTCGGTAAAGCAGCCGCCTGAGAGAGGGTACCGGTAAAAGACACTGAAGTg > 1:333346‑M2/33‑229 (MQ=255) actaggcccgtttattcgttgggggaAGTGCAAAGATTATCGAGTCTTTTGCGAGTGTCTGGCTGGAGGCGTCAGCGTGAAGCCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGTTTTACC‑TACAGTTACCAGTTTGGTCGGTTCGATAAAGCAGGCGACTGGAAGAGTGTTCCGGTAAAAGACACTGAAGTGGTTGaa < 2:488528‑M2/203‑1 (MQ=255) aggcccgtatattcgtgaaggtaAGGGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGTTTTACC‑TACAGTTACCAGTTTGGTCTGTTCGATAAAGCAGGCGACTGGAAGAGTGTTCCGGTAAAAGACACTGAAGTGGTTGAACGa < 1:536427‑M2/206‑1 (MQ=255) gcccgttttttcgggaaggtaAGGTCAAAGATAACCGGTTCTTTTTCGATTGGCTGGCTGTATGCGTGAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGTTTTACC‑TACAGTTACCAGTTTGGTCTGTTCGATAAAGCAGGCGACTGGAAGAGTGTTCCGGTAAAAGACACTGAAGTGGTTGAACGACt < 2:187490‑M2/208‑1 (MQ=255) gcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGTTTTACC‑TACAGTTACCAGTTTGGTCTGTTCGATAAAGCAGGCGACTGGAAGAGTGTTCCGGTAAAAGACACTGAAGTGGTTGAACGACt < 1:501171‑M2/208‑1 (MQ=255) tatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTTAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGTTTTACC‑TACAGTTACCAGTTTGGTCTGTTCGATAAAACCGGCGACGGGAAGAGTGTTCCGGTAAAATACACTGAAGTGGTTGAACGACTGGaga > 2:687330‑M2/17‑228 (MQ=255) tatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGTTTTACC‑TACAGTTACCGGTTTGGTCTGTTCGATAAAGAAGGCGACTGGAAGAGTGTTCCGGTAAAAGACACTTAAGGGGTTGAACAACCGGGGc > 1:631356‑M2/17‑229 (MQ=255) tatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGTTTTACC‑TACAGTTACCAGTTTGGTCTGTTCGATAAAGCAGGCGACTGGAATAGTGTTCCGGTAAAAGCCACTGAAGTGGTTGAACGACTGGAGc > 1:616731‑M2/17‑229 (MQ=255) tatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGTTTTACC‑TACAGTTACCAGTTTGGTCTGTTCGATAAAGCAGGCGACTGGAAGAGTGTTCCGGTAAAAGACACTGAAGTGGTTGAACCACGTGAGc > 1:69955‑M2/17‑229 (MQ=255) attttgggtaaggtaAGTGAAAAGATAATCGATTCTTGTGCGATTGGCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGTTTTACC‑TACAGTTACCAGTTTGGTCTGTTCGATAAAGCAGGCGACTGGAAGAGTGTTCCGGTAAAAGACACTGAAGTGGTTGAACGACTGGAGca < 2:74489‑M2/214‑1 (MQ=255) atattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGTTTTACC‑TACAGTTACCAGTTTGGTCTGTTCGATAAAGCAGGCGACTGGAAGAGTGTTCCGGTAAAAGACACTGAAGTGGTTGAACGACTGGAGca < 1:414051‑M2/214‑1 (MQ=255) ttcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGATTCCCGTTTTACC‑TACAGTTACCAGTTTGGTCTTTTCGATa > 2:341066‑M2/13‑165 (MQ=255) ttcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGTTTTACC‑TACAGTTACCAGTTTGGTCTGTTCGATa < 1:341066‑M2/153‑1 (MQ=255) aaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGCTGGAGCTGGAAGCGCAGGAATCCCGTTTTACC‑TACAGTTACCAGTTTGGTCTGTTCGATAAAGCAGGCGACTGGAAGAGTGTTCCGGTAAAAGACACTGAAGGGGTTGCACGACGGTAGCCAACCCTACg > 1:354622‑M2/7‑229 (MQ=255) aaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAAACGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGTTTTACT‑TACAGTTACCAGTTTGGTCTGTTCGATAAAGCAGGCGACTGGAAGAGGTTTCCGGTAAAAGCAACCGACGAGGTTGAACGACTGTAGaaaacccgtcg > 2:524121‑M2/7‑225 (MQ=255) | CCGGGTTGAGAAGCGGTGTAAGTGAACTGCAGTTGCCATGTTTTACGGCAGTGAGAGCAGAGATAGCGCTGATGTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGAAGGTAAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGTTTTACC‑TACAGTTACCAGTTTGGTCTGTTCGATAAAGCAGGCGACTGGAAGAGTGTTCCGGTAAAAGACACTGAAGTGGTTGAACGACTGGAGCACACCCTGCG > NC_000913/258469‑258906 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |