| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 4,065,580 | T→A | 13.4% | T63S (ACC→TCC) | yihO ← | putative sulphoquinovose importer |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,065,580 | 0 | T | A | 13.4% | 125.2 / 2.1 | 64 | T63S (ACC→TCC) | yihO | putative sulphoquinovose importer |
| Reads supporting (aligned to +/- strand): ref base T (43/8); new base A (2/7); total (49/15) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.51e-04 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
TACGAGCAGTTCATCAGACTGTATGAAAGTCCAAACATCATAAACAGCGCGGTGGCAATCGTCGTTTTAACCGGCAAACAAAAGGTGGTGGCGATAAACTGGAGCGTTGCAATTAACGCCGCCGGAACCGCTGCATATAAAATAAAGGGACGAAATTTGCCTTTAGGCCCAATATTTTTCCGCGAGTCG‑AGTAAAAATCCGGTGAG‑CATATCGGTAAACGCG‑GTAAAAAA‑CTTCGC‑CACCAGAAAGATAATCCCGCCATAGTAAGCAGGCATCCCTAATTCATCGGTATAAAATTTGAGGAGATACAGAGTACCGATGCAGAGCATTAAATTCGAACCGACGTCGCCCATACCATAGGCGATTTTTTCCCGCAGATTCAGTTTTAATGTCAGTGGATTATGGTCAGACATAATCACTCCTTATAACGCCCCGCAGGGCGTCGTTTAT > NC_000913/4065357‑4065803 | tACGAGCAGTTCATCAGACTGTATGAAAGTCCAAACATCATAAACAGCGCGGTGGCAATCGTCGTTTTAACCGGCAAACAAAAGGTGGTGGCGATAAACTGGAGCGTTGCAATTAACGCCGCCGGAACCGCTGCATATAAAATAAAGGGACGAAATTTGCCTTTAGGCCCAATATTTTTCCGCGAGTCG‑GGTAAAAAACCGGTGAT‑CATATCGTTAAACGCC‑GGaaaaa > 2:624630/1‑229 (MQ=255) cAGTTCATCAGACTGTATGAAAGTCCAAACATCATAAACAGCGCGGTGGCAATCGTCGTTTTAACCGGCAAACAAAAGGTGGTGGCGATAAACTGGAGCGTTGCAATTAACGCCGCCGGAACCGCTGCATATAAAATAAAGGGACGAAATTTGCCTTTAGGCCCAATATTTTTCCGCGAGTCG‑AGTAAAAATCCGGTGAG‑CATATCGGTAAACGCG‑GTAAAAAA‑CTTCg > 2:166368/1‑229 (MQ=255) cAGTTCATCAGACTGTATGAAAGTCCAAACATCATAAACAGCGCGGTGGCAATCGTCGTTTTAACCGGCAAACAAAAGGTGGTGGCGATAAACTGGAGCGTTGCAATTAACGCCGCCGGAACCGCTGCATATAAAATAAAGGGACGAAATTTGCCTTTAGGCCCAATATTTTTCCGCGAGTCG‑AGTAAAAATCCGGGGAG‑CATATCGGTAAACGAG‑GTAAAAAA‑ATTCg > 2:121218/1‑229 (MQ=255) acaGACTTTATGAAAGCCCAAACAACAATAACGGCGGGGTGGCAACCGGCGTTTTAACCGGCAAACAAAAGGTGGTGGCGATAAACTGGAGCGTTGCAATTAACGCCGCCGGAACCGCTGCATATAAAATAAAGGGACGAAATTTGCCTTTAGGCCCAATATTTTTCCGCGAGTCG‑AGTAAAAATCCGGTGAG‑CATATCGGTAAACGCG‑GTAAAAAA‑CTTCGC‑CACCAg < 2:139625/228‑1 (MQ=255) aCTGTATGAAAGTCCAAACATCATAAACAGCGCGGTGGCAATCGTCGTTTTAACCGGCAAACAAAAGGTGGTGGCGATAAACTGGAGCGTTGCAATTAACGCCGCCGGAACCGCTGCATATAAAATAAAGGGACGAAATTTGCCTTTAGGCCCAATATTTTTCCGCAAGTCG‑AGTAAAATTCCGGGGTG‑CATCTCGGTAAACGCG‑GTAAAAAA‑CTTAGC‑CACCATaaa > 1:294231/1‑228 (MQ=255) tGTATGAAAGTCCAAACATCATAAACAGCGCGGTGGCAATCGTCGTTTTAACCGGCAAACAAAAGGTGGTGGCGATAAACTGGAGCGTTGCAATTAACGCCGCCGGAACCGCTGCATATAAAATAAAGGGACGAAATTTGCCTTTAGGCCCAATATTTTTCCGCGAGTCG‑AGTAAAAATCCAGTGGG‑CATATCGGTAAACGCG‑GTAAAAAA‑CTTCGC‑CACCAGAAAGaa > 2:473877/1‑228 (MQ=255) tATGAAAGTCCAAACATCATAAACAGCGCGGTGGCAATCGTCGTTTTAACCGGCAAACAAAAGGTGGTGGCGATAAACTGGAGCGTTGCAATTAACGCCGCCGGAACCGCTGCATATAAAATAAAGGGACGAAATTTGCCTTTAGGCCCAATATTTTTCCGCGAGTCG‑AGTAAAAATCCGGTGAG‑CATATCGGTAAACGCG‑GTAAAAAA‑CTTCGC‑AACCAGAAAGATaa > 1:376814/1‑229 (MQ=255) tATGAAAGTCCAAACATCATAAACAGCGCGGTGGCAATCGTCGTTTTAACCGGCAAACAAAAGGTGGTGGCGATAAACTGGAGCGTTGCAATTAACGCCGCCGGAACCGCTGCATATAAAATAAAGGGACGAAATTTGCCTTTAGGCCCAACATTTTTCCGCGAGTCA‑GGTAAAAATCCGGTGGG‑CATATCGGTAAACGCG‑GTAAAACA‑CTTCGc‑cacacaaaaaaaaa > 2:46373/1‑218 (MQ=255) tATGAAAGTCCAAACATCATAAACAGCGCGGTGGCAATCGTCGTTTTAACCGGCAAACAAAAGGTGGTGGCGATAAACTGGAGCGTTGCAATTAACGCCGCCGGAACCGCTGCACATAAAATAAAGGGACGAAATTTGCCTTTAGGCCCAATATTTTTCCGCGAGTCG‑AGTAAAAATCCGGTGAG‑CAAATCGGTAAACGCG‑GTAAAAAA‑CTTCG‑‑CACCCGAAAGAAAAt > 2:173910/1‑229 (MQ=255) tATGAAAGTCCAAACATCATAAACAGCGCGGTGGCAATCGTCGTTTTAACCGGCAAACAAAAGGTAGTGGCGATAAACTGGAGCGTTGCAATTAACGCCGCCGGAACCGCTGCATATAAAATAAAGGGACGAAATTTGCCTTTAGGCCCAATATTTTTCCGCGAGTCG‑AGTAAAAATCCGGTGAG‑CATATCGGTAAACGCG‑GTAAAAAA‑CTTCGC‑AACCGGAAAGATaa > 1:646987/1‑229 (MQ=255) tGAAAGTCCAAACATCATAAACAGCGCGGTGGCAATCGTCGTTTTAACCGGCAAACAAAAGGTGGTGGCGATAAACTGGAGCGTTGCAATTAACGCCGCCGGAACCGCTGCATATAAAATAAAGGGACGAAATTTGCCTTTAGGCCCAATATTTTTCCGCGAGTCG‑AGTAAAAATCCGGTGAG‑CATATCGGTAAACGCG‑GTAAAAAA‑CTTCGC‑CACCAGAAAGATAATc > 1:496971/1‑229 (MQ=255) aGTCCAAACATCATAAACAGCGCGGTGGCAATCGTCGTTTTAACCGGCAAACAAAAGGTGGTGGCGATAAACTGGAGCGTTGCAATTAACGCCGCCGGAACCGCTGCATATAAAATAAAGGGACGAAATTTGCCTTTAGGCCCAATATTTTTCCGCGAGTCG‑AGTAAAAATCCGGTGAG‑CATATCGGTAAACGCG‑GTAAAAAA‑CTTCGC‑CACCAGAAAGATAATCCCGc > 1:411094/1‑229 (MQ=255) cAAACATCATAAACAGCGCGGTGGCAATCGTCGTTTTAACCGGCAAACAAAAGGTGGTGGCGCTAAACTGAGGCGTTGCAATTAACGCCGCCGGAACCGCTGCATATAAAATAAAGGGACGAAATTTGCCTTTAGGCCAAATATTTTTCCCCAGGTCG‑CGGAAAAATCCGGAGAG‑CAAAGCGTTAACCGAG‑TAAAAAAA‑CTTCGCACACCA‑AAAGAAAAACCCGGCaaa > 2:520249/1‑227 (MQ=255) cAAACATCATAAACAGCGCGGTGGCAATCGTCGTTTTAACCGGCAAACAAAAGGTGGTGGCGATAAACTGGAGCGTTGCAATTAACGCCGCCGGAACCGCTGCATATAAAATAAAGGGACGAAATTTGCCTTTAGGCCCCATATTTTTCCGCGAGTCA‑AGTAAAAATACGGTGAG‑CATATCGGTAAACCCG‑GGACAAAA‑CTTCGC‑CACCAGAACGTTAATCCCGCCATa > 1:379959/1‑229 (MQ=255) cAAACATCATAAACAGCGCGGTGGCAATCGTCGTTTTAACCGGCAAACAAAAGGTGGTGGCGATAAACTGGAGCGTTGCAATTAACGCCGCCGGAACCGCTGCATATAAAATAAAGGGACGAAATTTGCCTTTAGGCCCAATATTTTTCCGCGAGTCG‑AGTAAAAATCCGGTGGG‑CATATCGGTAAACGCG‑GTCAAAAA‑CTTCGC‑CACCAGAAAAATAATCCAGCCATa > 1:208144/1‑229 (MQ=255) cAAACATCATAAACAGCGCGGTGGCAATCGTCGTTTTAACCGGCAAACAAAAGGTGGTGGCGATAAACTGGAGCGTTGCAATTAACGCCGCCGGAACCGCTGCATATAAAATAAAGGGACGAAATTTGCCTTTAGGCCCAATATTTTTCCGCGAGTCG‑AGTAAAAATCCGGTGAG‑CATATCGGTAAACGCG‑GTAAAAAA‑CTTCGC‑CACCAGAAAGATAATCCCGcccaa > 1:462618/1‑226 (MQ=255) cAAACATCATAAACAGCGCGGTGGCAATCGTCGTTTTAACCGGCAAACAAAAGGTGGTGGCGATAAACTGGAGCGTTGCAATTAACGCCGCCGGAACCGCTGCATATAAAATAAAGGGACGAAATTTGCCTTTAGGCCCAATATTTTTCCGCGAGTCG‑AGTAAAAATCCGGTGAG‑CATATCGGTAAACGCG‑GTAAAAAA‑CTTCGC‑CACCAGAAAGATAATCCCGCCATa > 1:254981/1‑229 (MQ=255) cAAACATCATAAACAGCGCGGTGGCAATCGTCGTTTTAACCGGCAAACAAAAGGTGGTGGCGATAAACTGGAGCGTTGCAATTAACGCCGCCGGAACCGCTGCATATAAAATAAAGGGACGAAATTTGCCTTTAGGCCCAATATTTTTCCGCGAGTCG‑AGTAAAAATCCGGTGAG‑CATATCGGTAAACGCG‑GTAAAAAA‑CTTCGC‑CACCAGAAAGATAATCCCGCCATa > 1:237646/1‑229 (MQ=255) cAAACATCATAAACAGCGCGGTGGCAATCGTCGTTTTAACCGGCAAACAAAAGGTGGTGGCGATAAACTGGAGCGTTGCAATTAACGCCGCCGGAACCGCTGCATATAAAATAAAGGGACGAAATTTGCCTTTAGGCCCAATATTTTTCCGCGAGTCG‑AGTAAAAATCCGGTGAG‑CAGATCGGTAAACGCG‑GAAAAAAA‑CTTCGC‑CACAAGAAAGAAAAAccccacaaa > 2:99974/1‑223 (MQ=255) gcgcGGTGGCAATCGTCGTTTTAACCGGCAAACAAAAGGTGGTGGCGATAAACTGGAGCGTTGCAATTAACGCCGCCGGAACCGCTGCATATAAAATAAAGGGACGAAATTTGCCTTTAGGCCCAATATTTTTCCGCGAGTCG‑ATTAAAAATCCGGTGAG‑CATATCGGGAAACTCG‑GTAAAAAA‑CTTCGC‑CACCAGAAAGATAATCCCGCCATAGAAAGAAGGCATccc > 1:228056/1‑229 (MQ=255) gcgcGGTGGCAATCGTCGTTTTAACCGGCAAACAAAAGGTGGTGGCGATAAACTGGAGCGTTGCAATTAACGCCGCCGGAACCGCTGCATATAAAATAAAGGGACGAAATTTGCCTTTAGGCCCAATATTTTTCCGCGAGTCG‑AGTAAAAATCCGGTGAG‑CATATCGGTAAACGCG‑GTAAAAAA‑CTTCGC‑AACCAGAAAGATAATCCCGCCATAGTAAGCAGGCATccc > 1:549315/1‑229 (MQ=255) gcgcGGTGGCAATCGTCGTTTTAACCGGCAAACAAAAGGTGGTGGCGATAAACTGGAGCGTTGCAATTAACGCCGCCGGAACCGCTGCATATAAAATAAAGGGACGAAATTTGCCTTTAGGCCCAATATTTTTCCGCGAGTCG‑AGTAAAAATCCGGTGAG‑CATATCGGGAAACGCG‑GTAAAAAA‑ATTCGC‑CACCAGAAAGATAATCCCGCCATAGTAAGCAGGCATccc > 1:689746/1‑229 (MQ=255) gcgcGGTGGCAATCGTCGTTTTAACCGGCAAACAAAAGGTGGTGGCGATAAACTGGAGCGCTGCAATTAACGCCGCCGGAACCGCTGCATATAAAATAAAGGGACGAAATTTGCCTTTAGGCCCAATATTTTTCCGCGAGTCG‑AGTAAAAATCCGGTGAG‑CATATCGGTAAACGCG‑GTAAAAAA‑CTTCGC‑CACAGGAAAGATAATCCCGCCTCAGTAAGAAGGAAcccc > 1:727718/1‑229 (MQ=255) cgcgGTGGCAATCGTCGTTTTAACCGGCAAACAAAAGGTGGTGGCGATAAACTGGAGCGTTGCAATTAACGCCGCCGGAACCGCTGCATATAAAATAAAGGGACGAAATTTGCCTTTAGGCCCAATATTTTTCCGCGAGTCG‑AGTAAAAATCCGGTGAG‑CATATCGGTAAACGCG‑GTAAAAAA‑CTTCGC‑CACCAGAAAGATAATACCGCCATAGAAAGCAGGCATCCCt > 1:74820/1‑229 (MQ=255) cgcgGTGGCAATCGTCGTTTTAACCGGCAAACAAAAGGTGGTGGCGATAAACTGGAGCGTTGCAATTAACGCCGCCGGAACCGCTGCATATAAAATAAAGGGACGAAATTTGCCTTTAGGCCCAATATTTTTCCGCGAGTCG‑AGTAAAAATCCGGGGAG‑CATATCGGTAAACGCG‑GTAAAAAA‑CTTCGC‑CAACAGAAAGATAATCCGGCCATAGTAAGAAGGCAcccca > 2:42123/1‑228 (MQ=255) gcgGTGGCAATCGTCGTTTTAACCGGCAAACAAAAGGTGGTGGCGATAAACTGGAGCGTTGCAATTAACGCCGCCGGAACCGCTGCATATAAAATAAAGGGACGAAATTTGCCTTTAGGCCCAATATTTTTCCGCGAGTCG‑AGTAAAAATCCGGTGAG‑CATATCGGTAAACGCG‑GCAATAAA‑CTTCGC‑CACCCGAAAGATAATCCCGCCATAGCAAGCATGCATCCCTa > 1:191109/1‑229 (MQ=255) taagcgtcttTTAAACCGGAAAAAAAAAGGTGGTGGCAGAAAATTGGAGGGTTAAAATTACCGCCTCCGGAACCGTTTAATAAAAAATAAAGGGACAAATTTTGCTTTTAGTCCCAATATTTTTCCGAGAGTCG‑AGTAAAAACCCGGTGAG‑CATATCGGTAAACGCG‑GTAAAAAA‑CTTCGC‑CACCAGAAAAATAATCCCGCTATAGTAAGCAGGCATCCCTAATTCATc < 2:197675/225‑1 (MQ=255) cGGAAAAAAAAAGGGGGGGGAGAAAAAATGGGGGGGTGCAATAAACCCCGCAGAAACCGCTGAAAATAAAAGAAAGAGAAAAAATTTGATTTTGGGACAAATATTTTCCGGGGAGGGG‑AGAAAAAAGCTGGGGAG‑CATGCGGGAAAACGCG‑GTAAAAAA‑CTCCCC‑CACAAAAAAGTAAATCCCGCCATAGTAAGCAGGCATCCCTAATTCATCGGTATAAAATTTgagg < 2:599472/229‑1 (MQ=255) caaacaaaAGGTGGTGGCGATAAACTGGAGCGTTGCAATTAACGCCGCCGGAACCGCTGCATATAAAATAAAGGGACGAAATTTGCCTTTAGGCCCAATATTTTTCCGCGAGTCG‑AGTAAAAATCCGGTGAG‑CATATCGGTAAACGCG‑GTAAAAAA‑CTTCGC‑CACCAGAAAGATAATCCCGCCATAGTAAGCAGGCATCCCTAATTCATCGGAATAAAATTTgaggga > 2:516409/1‑226 (MQ=255) gtggCGATAAACTGGAGCGTTGCAATTAACGCCGCCGGAACCGCTGCATATAAAATAAAGGGACGAAATTTGCCTTTAGGCCCAATATTTTTCCGCGAGTCG‑AGTAAAAATCCGGTGAG‑CATATCGGTAAACGCG‑GTAAAAAA‑CTTCGC‑CACCAGAAAGATAATCCCGCCATAGTAAGCAGGCATCCCTAATTCATCGGTATAAAATTTGAGAGGATACAGAGAACCGa > 1:606870/1‑229 (MQ=255) tggCGATAAACTGGAGCGTTGCAATTAACGCCGCCGGAACCGCTGCATATAAAATAAAGGGACGAAATTTGCCTTTAGGCCCAATATTTTTCCGCGAGTCG‑AGTAAAAATCCGGTGAG‑CATATCGGTAAACGCG‑GTAAAAAA‑CTTCGC‑CACCAGAAAGATAATCCCGCATAAGTAAGCAGGCATACCTAATTCATCGGTATAAAATTTGAGGAGATACAGAGTACCGAt > 1:399985/1‑229 (MQ=255) gCGTTGCAATTAACGCCGCCGGAACCGCTGCATATAAAATAAAGGGACGAAATTTGCCTTTAGGCCCAATATTTTTCCGCGAGTCG‑AGTAAAAATCCGGTGAG‑CATATCGGTAAACGCG‑GTAAAAAA‑CTTCGC‑CACCAGAAAGATAATCCCGCCATAGTAAGCAGGCATCCCTAATTCATCGGTATAAAATTTGAGGAGATAACGAGTACCGATGCAGAGCATTAAAtt > 1:348087/1‑229 (MQ=255) ttGCAATTAACGCCGCCGGAACCGCTGCATATAAAATAAAGGGACGAAATTTGCCTTTAGGCCCAATATTTTTCCGCGAGTCG‑AGTAAAAATCCGGTGAG‑CATATCGGTAAACGCG‑GTAAAAAA‑CTTCGC‑CACCAGAAAGATAATCCCGCCATAGTAAGCAGGCATCCCTAATTCATCGGTATAAAATTTGATGAGATACAGAGTACCGATGCAGAGCATTAAATTCg > 1:438582/1‑228 (MQ=255) tGCAATTAACGCCGCCGGAACCGCTGCATATAAAATAAAGGGACGAAATTTGCCTTTAGGCCCAATATTTTTCCGCGAGTCG‑AGTAAAAATCCGGTGAG‑CATATCGGTAAACGCG‑GTAAAAAA‑CTTCGC‑CACCAGAAAGATAATCCCGCCATAGTAAGCAGGCACCCCTAATTCATCGGTATAAAATTTGAGGGAATACAGAGTACCCATCCAAAGAATAAAATTCaaa > 2:299121/1‑229 (MQ=255) cAATTAACGCCGCCGGAACCGCTGCATATAAAATAAAGGGACGAAATTTGCCTTTAGGCCCAATATTTTTCCGCGAGTCG‑AGTAAAAATCCGGTGAG‑CATATCGGTAAACGCG‑GTAAAAAA‑CTTCGC‑CACCAGAAAGATAATCCCGCCATAGTAAGCAGGCATCCCTAATCCATCGGTATAAAATTTTAGGAAAAACAGAGGACCGATCAAAAGCATTAAATTACAAcc > 2:100180/1‑229 (MQ=255) accgccgcCGGAACCGATGTATATAAAATAAAGGGACGAATTTTGCTTTTAGGTCAAATTTTTTACCGAGAGTCG‑AGTAAAAACCGGGAGAC‑CATACGGGAAAAGGAG‑GTAAAAAA‑CTTCGC‑CACCAAAAATAAAATCCCGCCATAGTAAGCAGGCATCCCTAATTCATCGGTATAAAATTTGAGGAGATACAGAGTACCGATGCAGAGCATTAAATTCGAACCGACg < 2:720422/226‑1 (MQ=255) gccgGAACCGCTGCATATAAAATAAAGGGACGAAATTTGCCTTTAGGCCCAATATTTTTCCGCGAGTCG‑AGTAAAAATCGGGTGAG‑CATATCCGTAAACGCG‑GTAAAAAA‑CATCGC‑CACCAGAAAGATAATCCCGACATAGTAAGCAGGCATCCCTAATTCATCGGTATAAAATTTGCGGAGAAACACTGTCCCCATTCAGAGCATTAAATTCAAACCGACGTGGCcca > 2:71198/1‑229 (MQ=255) ccgGAACCGCTGCATATAAAATAAAGGGACGAAATTTGCCTTTAGGCCCAATATTTTTCCGCGAGTCG‑AGTAAAAATCCGGTGAG‑CATATCGGTAAACGCG‑GTAAAAAA‑CTTCGC‑CACCAGAAAGATAATCCCGCCATAGTAAGCAGGCATCCCTAATTCATCGGTATAAAATTTGAGGAGATACAGAGTACCGATGCAGAGCCTTAAATTCGAACCGACGTCGCccat > 1:396688/1‑229 (MQ=255) tGCATATAAAATAAAGGGACGAAATTTGCCTTTAGGCACAATATTTTTCCGCGAGTTG‑AGTAACAATCCGGTGAG‑CATATCGGTAAACGCG‑GTAAAAAA‑CTTCGC‑CACCAGAAAGATAATCCCGCCATAGTAAGCAGACTTCCCTAATTCATCGGTCTAAAATTTGAGTCGATACAGAGTACCGATCCAGATCATTAAATTCGTACCGACGCAGTCCATACCTTCGGc > 1:575784/1‑228 (MQ=255) aataaaGGGACGAAATTTGCCTTTAGGCCCAATATTTTTCCGCGAGTCG‑AGTAAAAATCCGGTGAG‑CATATCGGTAAACGCG‑GTAAAAAA‑CTTCGC‑CACCAGAAAGATAATCCCGCCATAGTAAGCAGGCATCCCTAATTCATCGGTATAAAATTTGAGGAGATACAGAGTACCGATGCAGAGCATTAAATTCGAACCGACGTCGCCCATACCATAGGCGATTTTTTcc > 1:457959/1‑229 (MQ=255) ataaaGGGACGAAATTTGCCTTTAGGCCCAATATTTTTCCGCGAGTCG‑AGTAAAAATCCGGTGAG‑CATATCGGTAAACGCG‑GTAAAAAA‑CTTCGC‑CACCAGAAAGATAATCCCGCCATAGTAAGCAGGCATCACTAATTCATCGGTATAAAATTTGAGGAGATACAGAGTACCGATGCAGAGCATTAAATTCGAACCGACGTCGCCCATACCATAGGCGAGTTTTTccc > 1:676284/1‑229 (MQ=255) aaaGGGACGAAATTTGCCTTTAGGCCCAATATTTTTCCGCGAGTCG‑AGTAAAAATCCGGTGAG‑CATATCGGTAAACGCG‑GTAAAAAA‑CTTCGC‑CACCAGAAAGATAATCCCGCCATAGTAAGCAGGCATCCCTAATTCATCGGTATAAAATTTGAGGAGATACAGAGTACCGATGCAGAGCATTAAATTCGAACCGACGTCGCCCATAACAAAGGCGATTTTTTccccc > 2:461292/1‑227 (MQ=255) aaaGGGACGAAATTTGCCTTTAGGCCCAATATTTTTCCGCGAGTCA‑AGTAAAAATCCGGTGAG‑CATATCGGTAAACGCG‑GTAAAAAA‑CTTCGC‑CACCAGAAAGATAATCCCGCCATAGTAAGAAGGCATCCCTAATTCATCGGTATAAAATTTGAGGAGATACAGAGTACCGATGCAGAGCATTAAATCCGAACCGAAGTCGCCCATACCCTAGCGGATTTTTTCACGc > 1:612182/1‑229 (MQ=255) aGGGACGAAATTTGCCTTTAGGCCCAATATTTTTCCGCGAGTCG‑AGTAAAAATCCGGTGAG‑CATATCGGTAAACGCG‑GTAAAAAA‑CTTCGC‑CACCAGAAAGATAATCCCGCCATAGTAAGCAGGCATCCCTAATTCATCGGTATAAAATTTgag > 1:18679/1‑154 (MQ=255) aGGGACGAAATTTGCCTTTAGGCCCAATATTTTTCCGCGAGTCG‑AGTAAAAATCCGGTGAG‑CATATCGGTAAACGCG‑GTAAAAAA‑CTTCGC‑CACCAGAAAGATAATCCCGCCATAGTAAGCAGGCATCCCTAATTCATCGGTATAAAATTTGAGGAGATACAAATTACCGATGCAAAGCATTAAATTCGAACCGACGTCGCCCATACCATAGGCGATTTTTTccccccg > 1:462331/1‑225 (MQ=255) aGGGAAGAATTTCGCCTTTAGGCCAAATATTTTGCCGCGAGCCG‑AGAAAAACTCCGGGGAG‑CATAGCGATAAACGCG‑ATAAAAAA‑CTCCAC‑CACCAGAAAAAAAATCCCGCCATAGTAAGCAGGCATCCCTAATTCATCGGTATAAAATTTgag < 2:18679/154‑1 (MQ=255) gACAAAATTTGCCTTGAGCCCAAATTTTTTCCCGAGAGTCG‑AAAAAAAACCCGGGTAC‑CATTCCGGTAAACGCG‑ATAAAAAA‑CTCCCC‑CCCCAAAAAGATAACCCCGCCATAGTAAGCAGGCATCCCTAATTCATCGGTATAAAATTTGAGGAGATACAGAGTACCGATGCAGAGCATTAAATTCGAACCGACGTCGCCCATACCATAGGCGATTTTTTCCCGCAGAtt < 1:121218/229‑1 (MQ=255) gACAAAATTGGCCTTTAGGCCCAATATTTTTCCGCGAGTCG‑AGTAAAATTCCGGTGAG‑CATATCGGTAAACGGG‑GAAAAAAA‑CTCCGC‑CACAAGAAAAATAATCCCGCCATAGTAAGCAGGCATCCCTAATTCATCGGTATAAAATTTGAGGAGATACAGAGTACCGATGCAGAGCATTAAATTCGAACCGACGTCGCCCATACCATAGGCGATTTTTTCCCGCAGAtt < 1:624631/229‑1 (MQ=255) acgaaTTTTCCGTTAAGGCCAATTTTTTTCCGGCAGACGCAAAAAAAACCCGGTGAT‑AATAGGGGAAAGCGCG‑AAAAAAAC‑CTTCGC‑CACCAAAAAGAAAATCCCGCCATAGTAAGCAGGCATCCCTAATTCATCGGTATAAAATTTGAGGAGATACAGAGTACCGATGCAGAGCATTAAATTCGAACCGACGTCGCCCATACCATAGGCGATTTTTTCCCGCAGATTc < 1:473877/226‑1 (MQ=255) gCCTTTAGGCCCAATATTTTTCCGCGAGTCG‑AGTAAAAATCCGGTGAG‑CATATCGGTAAACGCG‑GTAAAAAA‑CTTCGC‑CACCAGAAAGATAATCCCGCCATAGTAAGCAGGCATCCCTAATTCATCGGTATAAAATTTGAGGAGATACAGAGTACCGATGCAGAGCATTAAATTCGAACCGAGGTCGCCCAAACCACAGGGGATTTTTTCCCCCAGATCAAGTTTTAAt > 2:514638/1‑229 (MQ=255) tAGGCCCAATATTTTTCCGCGAGTCG‑AGTAAAAATCCGGTGAG‑CATATCGGTAAACGCG‑GTAAAAAA‑CTTCGC‑CACCAGAAAGATAATCCCGCCATAGTAAGCAGGCATCCCTAATTCATCGGTATAAAATTTGAGGAGATACAGAGTACCGATGCAGAGCATTAAATTCGAACCGAGGTCGCCCATACCATAGGCGATTTTTTCCCCCAGATTCACTTTTAATGTCAg > 1:10415/1‑229 (MQ=255) tttctCGGCGGGCCG‑AATAAAAACCCGAGGA‑‑CACATCTGGAAAAGCG‑GTAAAAAACCTTCCA‑CACAAAAAAGAAAATCCCGCCATAGTAAGCAGGCATCCCTAATTCATCGGTAGAAAATTTGAGGAGATACAGAGTACCGATGCAGAGCATTAAATTCGAACCGACGTCGCCCATACCATAGGCGATTTTTTCCCGCAGATTCAGTTTTAATGTCAGTGGATTATGGt < 2:208144/229‑1 (MQ=255) tttCCGCGAGTCG‑AGTAAAAATCCGGTGAG‑CATATCGGTAAACGCG‑GTAAAAAA‑CTTCGC‑CACCAGAAAGATAATCCCGCCATAGTAAGCAGGCATCCCTAATTCATCGGTATAAAATTTGAGGAGATACAGAGTACCGATGCAGAGCATTAAATTCGAACCGACGTCGCCACTACCATAGGCGCTTTTTTCCCGAAGATTCAGTTTTAATTTCCATGGATTATGGTc > 2:475705/1‑228 (MQ=255) ttCCGCGAGTCG‑AGTAAAAATCCGGTGAG‑CATATCGGTAAACGCG‑GTAAAAAA‑CTTCGC‑CACCAGAAAGATAATCCCGCCATAGTAAGCAGGCATCCCTAATTCATCGGTATAAAATTTGAGGAGATACAGAGTACCGATGCAGAGCATTAAATTCGAACCGACGTCGCCCATACCATAGGCGATTTTTTCCCGCAGATTCAGTTTTAATGTCAGTGGATTATGGTCa > 1:663621/1‑228 (MQ=255) cgagtcg‑agtAAAAATCCGGTGAG‑CATATCGGTAAACGCG‑GTAAAAAA‑CTTCGC‑CACCAGAAAGATAATCCCGCCATAGTAAGCAGGCATCCCTAATTCATCGGTATAAAATTTGAGGAGATACAGAGTACCGATGCAGAGCATTAAATTCGAACCGACGTCGcc > 1:69591/1‑165 (MQ=255) cgagtcg‑agtAAAAATCCGGTGAG‑CATATCGGTAAACGCG‑GTAAAAAA‑CTTCGC‑CACCAGAAAGATAATCCCGCCATAGTAAGCAGGCATCCCTAATTCATCGGAATAAAATTTGAGGAGATACAGAGTACCGATGCAGCGCATTAAATTCGAACCGACGTCGCCCATACCATAGGCGATTTTTTCCCGCAGATTCAGTTTTAATGTCAGTGGAGTATggcgggctct > 1:742409/1‑220 (MQ=255) agtcg‑agtAAAAATCCGGTGAG‑CATATCGGTAAACGCG‑GCAAAAAA‑CTTCGC‑CACCAGAAAGATAATCCCGCCATAGTAAGCAGGCATCCCTAATTCATCGGTATAAAATTTGAGGAGATACAGAGTACCGATGCAGAGCATTAAATTCGAACCGACGACGCCCATACCATAGGCGATTTTTTCCCGCAGATTCAGTTTTAATGTCAGTGGATTATGGTCAGCCATAAt > 1:661028/1‑229 (MQ=255) ttgtagaaaaaaTCCGGTGAA‑CATATCGGAAACCTGT‑GAAAAAAA‑CTTCG‑‑CACCAAAAAGATAACCCCGGCATAGTAAGCAGGCATCCCTAATTCATCGGTATAAAATTTGAGGAGATACAGAGTACCGATGCAGAGCATTAAATTCGAACCGACGTCGCCCATACCATAGGCGATTTTTTCCCGCAGATTCAGTTTTAATGTCAGTGGATTATGGTCAGACATAATCa < 1:173910/222‑1 (MQ=255) aaaaaaaaaaaaGCCGGGGCG‑CATAT‑GGTAAACGGGAGAAAAAAA‑CTCCGA‑CACAAGAAAGAAAATGCCGCCATAGTAAGCAGGCATCCCTAATTCATCGGTATAAAATTTGAGGAGATACAGAGTACCGATGCAGAGCATTAAATTCGAACCGACGTCGCCCATACCATAGGCGATTTTTTCCCGCAGATTCAGTTTTAATGTCAGTGGATTATGGTCAGACATAAt < 1:669453/221‑1 (MQ=255) aaaaaaaaaCCGGGGAGACATAGCGGAAAACGGG‑AAAAAAAA‑CTCCGC‑CACAAAAAAGATAACCCCGCCATAGTAAGCAGGCATCCCTAATTCATCGGTATAAAATTTGAGGAGATACAGAGTACCGATGCAGAGCATTAAATTCGAACCGACGTCGCCCATACCATAGGCGATTTTTTCCCGCAGATTCAGTTTTAATGTCAGTGGATTATGGTCAGACATAATCACt < 1:100180/226‑1 (MQ=255) tcccGGTGAT‑AATCTGGATAACCGGG‑GTAAAAAC‑CTGCGC‑CACAAAAAATATATCCCCGCCATAGTAAGCAGGCATCCCTAATTCATCGGTATAAAATTTGAGGAGATACAGAGTACCGATGCAGAGCATTAAATTCGAACCGACGTCGCCCATACCATAGGCGATTTTTTCCCGCAGATTCAGTTTTAATGTCAGTGGATTATGGTCAGACATAATCACTCCTtata < 2:228056/226‑1 (MQ=255) ccGGGGAT‑CATATCGGAAAACGGT‑GAAAAAAA‑CTCCCC‑CACCAAAAAGAAAACCCCGCCATAGTAAGCAGGCATCCCTAATTCATCGGTATAAAATTTGAGGAGATACAGAGTACCGATGCAGAGCATTAAATTCGAACCGACGTCGCCCATACCATAGGCGATTTTTTCCCGCAGATTCAGTTTTAATGTCAGTGGATTATGGTCAGACATAATCACTCCTTATAACg < 1:150850/229‑1 (MQ=255) cATATCGGTAAACGCG‑GTAAAAAA‑CTTCGC‑CACCAGAAAGATAATCCCGCCATAGTAAGCAGGCATCCCTAATTCATCGGAATAAAATTTGAGGAGGTACAGAGTACCGATGCAGAGCATTAAATTCGAACCGACGTCGCCCATACCATAGGCGATTTTTTCCCGCAGATTCAGTTTTAATTGCAGCGGATTATGGTCAGTCATACTCACCCCTtatattgtctcttt > 2:669452/1‑218 (MQ=255) cgcg‑GAAAAAAA‑CTTCGC‑CACCAGAAAGATAATGCCGACATAGTAAGCAGGCATCCCTAATTCATCGGTATAAAATTTGAGGAGATACAGAGTACCGATGCAGAGCATTAAATTCGAACCGACGTCGCCCATACCATAGGCGATTTTTTCCCGCAGATTCAGTTTTAATGTCAGTGGATTATGGTCAGACATAATCACTCCTTATAACGCCCCGCAGGGCGTCGTttat < 1:299121/229‑1 (MQ=255) | TACGAGCAGTTCATCAGACTGTATGAAAGTCCAAACATCATAAACAGCGCGGTGGCAATCGTCGTTTTAACCGGCAAACAAAAGGTGGTGGCGATAAACTGGAGCGTTGCAATTAACGCCGCCGGAACCGCTGCATATAAAATAAAGGGACGAAATTTGCCTTTAGGCCCAATATTTTTCCGCGAGTCG‑AGTAAAAATCCGGTGAG‑CATATCGGTAAACGCG‑GTAAAAAA‑CTTCGC‑CACCAGAAAGATAATCCCGCCATAGTAAGCAGGCATCCCTAATTCATCGGTATAAAATTTGAGGAGATACAGAGTACCGATGCAGAGCATTAAATTCGAACCGACGTCGCCCATACCATAGGCGATTTTTTCCCGCAGATTCAGTTTTAATGTCAGTGGATTATGGTCAGACATAATCACTCCTTATAACGCCCCGCAGGGCGTCGTTTAT > NC_000913/4065357‑4065803 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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |