New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1127798	136 (0.940)	3 (0.020)	3/506	NT	2.2%	intergenic (+69/‑41)	yceM/murJ	putative oxidoreductase/putative lipid II flippase
	?	NC_000913	= 1127801	136 (0.970)					intergenic (+72/‑38)	yceM/murJ	putative oxidoreductase/putative lipid II flippase
Rejected: Frequency below/above cutoff threshold.

TTGGCAGAGTACGCTTGAGCAACGTGGGTTTGTCGGCTGTGCGCGGCACTTCATTGAATGTGTGCAAAACCAGACAGTTCCGCAAACCGCCGGCGAACAGGCCGTGCTGGCGCAACGTATCGTTGACAAGATCTGGCGCGATGCGATGAGTGAATAAA‑CCCTGTAACATCTGGCGGTAGCAATTCACCATAATCCAGGTAGACTATTCGCCTCTTTCAGCGCCTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/1127573‑1127798 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcctgc‑‑‑‑AAGGCAGGCGCTGAAAGAGGCGAATAGTCTACCTGGATTATGGTGAATTGCTACCGCCAGATGTTACAGGGTTTATTCACTCATCGCATCGCGCCAGATCTTGTCAACGATACGTTGCGCCAGCACGGCCTGTTCGCCGGCGGTTTGCGGAACTGTCTGGTTTTGCACACATTCAATGAAGTGCCGCGCACAGCCGACAAACCCACGTTGCTCAAGCGTACTCTGCCAACCAGGAATCGGTTTATGCACTACGCCCTGCCCGCGCTCCTCACGCCATTCGCGCATA  <  NC_000913/1127801‑1127516                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       TTGGCAGAGTACGCTTGAGCAACGTGGGTTTGTCGGCTGTGCGCGGCACTTCATTGAATGTGTGCAAAACCAGACAGTTCCGCAAACCGCCGGCGAACAGGCCGTGCTGGCGCAACGTATCGTTGACAAGATCTGGCGCGATGCGATGAGTGAATAAA‑CCCTGTAACATCTGGCGGTAGCAATTCACCATAATCCAGGTAGACTATTCGCCTCTTTCAGCGCCTGCCTTGCAGGCAGGCGCTGAAAGAGGCGAATAGTCTACCTGGATTATGGTGAATTGCTACCGCC                                                                                                                                                                                                                                      <  1:714629/288‑1                            GTTTGTCGGCTGTGCGCGGCACTTCATTGAATGTGTGCAAAACCAGACAGTTCCGCAAACCGCCGGCGAACAGGCCGTGCTGGCGCAACGTATCGTTGACAAGATCTGGCGCGATGCGATGAGTGAATAAACCCCTGTAACATCTGGCGGTAGCAATTCACCATAATCCAGGTAGACTATTCGCCTCTTTCAGCGCCTGC‑‑‑‑CTTGCAGGCGCTGAAAGAGGCGAATAGTCTACCTGGATTATGGTGAATTGCTACCGCCAGATGTTACAG                                                                                                                                                                                                                           <  1:417304/269‑1                            GTTTGTCGGCTGTGCGCGGCACTTCATTGAATGTGTGCAAAACCAGACAGTTCCGCAAACCGCCGGCGAACAGGCCGTGCTGGCGCAACGTATCGTTGACAAGATCTGGCGCGATGCGATGAGTGAATAAACCCCTGTAACATCTGGCGGTAGCAATTCACCATAATCCAGGTAGACTATTCGCCTCTTTCAGCGCCTGC‑‑‑‑CTTGCAGGCGCTGAAAGAGGCGAATAGTCTACCTGGATTATGGTGAATTGCTACCGCCAGATGTTACAG                                                                                                                                                                                                                           >  2:417304/1‑269                                                                                                                                                                                                                             CGCCTGC‑‑‑‑AAGGCAGGCGCTGAAAGAGGCGAATAGTCTACCTGGATTATGGTGAATTGCTACCGCCAGATGTTACAGGGTTTATTCACTCATCGCATCGCGCCAGATCTTGTCAACGATACGTTGCGCCAGCACGGCCTGTTCGCCGGCGGTTTGCGGAACTGTCTGGTTTTGCACACATTCAATGAAGTGCCGCGCACAGCCGACAAACCCACGTTGCTCAAGCGTACTCTGCCAACCAGGAATCGGTTTATGCACTACGCCCTGCCCGCCCTCCTCACGCCATTCac       >  1:817883/1‑286                                                                                                                                                                                                                             CGCCTGC‑‑‑‑AAGGCAGGCGCCGAAAGAGGCGACTAGTCTACCTTGATTATGGTGAATTGCTACCGCCAGATGTTACAGGGTTTATTCACTCATCGCATCTGGCCAGATCTTGTCAACGTTACGTTGCGCCAGCACGGCCTGTTCGCCGGCGGTTTGCGGAACTGTCTGGTTGTGCACACATTCAATGAAGTGCCGCGCACAGCCGACAAACCCACGTTGCTCAAGCGTACTCTGCCAACCAGGAATCGGTTTATGCACTACGCCCTGCCCGCGCTCCTCACGCCATTCGCG      <  2:248218/289‑1                                                                                                                                                                                                                                cgtC‑‑‑‑AAGGCAGGCGCTGAAAGAGGCGAATAGTCTACCGTGATTATGGTGAATTGCTACCGCCATATGTTACAGGGTTTATTCACTCATCGCATCGCGCCAGATCTTGTCAACGATACGTTGCGCCAGCACGGCCTGTTCGCCGGCGGTTTGCGGAACTGTCTGGTTTTGCACACATTCAATGAAGTGCCGCGCACAGCCGACAAACCCACGTTGCTCAAGCGTACTCTGCCAACCAGGAATCGGTTTATGCACTACGCCCTGCCCGCGCTCCTCACGCCATTCGCGCA    <  2:145756/285‑1                                                                                                                                                                                                                                CTGG‑‑‑‑AAGGAAGGCGCTGAAAGAGGCGAATAGTCTACCTTGATGATTGTGAATTGCTACCGCAAGATGTTACAGGGTTTATTCACTCATCGCATCGCGCCAGATCTTGTCAACGATACGTGGGGCCAGCACGGCCTGTTCGCCGGCGGTTTGCGGAACTGTCTGGTTTTGCACACATTCAATGAAGGGCCGCGCACAGCCGACAAACCCACGTTGCTCAAGCGTACTCTGCCAACCAGGAATCGGTTTATGCACTACGCCCTGCCCGCGCTCCTCACGCCATTCGCGCAT   <  2:714629/289‑1                                                                                                                                                                                                                                CTGC‑‑‑‑AAGGCAGGCGCTGAAAGCGGCGAATAGTCTACCTGGATTATGGTGAATTGCTACCGCCAGATGTTACAGGGTTTATTCACTCATCGCATGGCGCCAGATCTTGTCAACGATAAGTTGCGCCAGCACGGCCTGTTGGCCGGCGGTTTGCGGAACTGTCTGGTTTTGAACACATTCAATGAAGTGCCGCGCACAGCGGACAAACCCTCGTTGCTCAAGCGTACTCTGCCAACCAGGAATCGGTTTATGCACTACGCCCTGCCCGCGCTCCTCACGCCATTCGCGCAT   <  2:1032818/289‑1                                                                                                                                                                                                                                CTGC‑‑‑‑AAGGCAGGCGCTGAAAGAGGCGAATAGTCTACCTGGATTATGGTGAATTGCTACCGCCAGATGTTACAGGGTTTATTCACTCATCGCATCGCGCCAGATCTTGTCAACGATACGTTGCGCCAGCACGGCCTGTTCGCCGGCGGTTTGCGGAACTGTCTGGTTTTGCACACATTCAATGAAGTGCCGCGCACAGCCGACAAACCCACGTTGCTCAAGCGTACTCTGCCAACCAGGAATCGGTTTATGCACTACGCCCTGCCCGCGCTCCTCACGCCATTCGCGCAT   <  1:149053/289‑1                                                                                                                                                                                                                                 TGC‑‑‑‑AAGGCAGGCGCTGAAAGAGGCGAATAGTCTACCTGGATTATGGTGAATTGCTACCGCCAGATGTTACAGGGTTTATTCACTCATCGCATCGCGCCAGATCTTGTCAACGATACGTTGCGCCAGCACGGCCTGTTCGCCGGCGGTTTGCGGAACTGTCTGGTTTTGCACACATTCAATGAAGTGCCGCCCAAAGCCGACAAACCCCCGTTGCCCAAGCGTACTCTGCCAACCAGGAATCGGTTTATGCACTACGCCCTGCCCGCGCCCCTCCCGCCATTCCCGCATA  >  2:762238/1‑289                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       TTGGCAGAGTACGCTTGAGCAACGTGGGTTTGTCGGCTGTGCGCGGCACTTCATTGAATGTGTGCAAAACCAGACAGTTCCGCAAACCGCCGGCGAACAGGCCGTGCTGGCGCAACGTATCGTTGACAAGATCTGGCGCGATGCGATGAGTGAATAAA‑CCCTGTAACATCTGGCGGTAGCAATTCACCATAATCCAGGTAGACTATTCGCCTCTTTCAGCGCCTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/1127573‑1127798 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcctgc‑‑‑‑AAGGCAGGCGCTGAAAGAGGCGAATAGTCTACCTGGATTATGGTGAATTGCTACCGCCAGATGTTACAGGGTTTATTCACTCATCGCATCGCGCCAGATCTTGTCAACGATACGTTGCGCCAGCACGGCCTGTTCGCCGGCGGTTTGCGGAACTGTCTGGTTTTGCACACATTCAATGAAGTGCCGCGCACAGCCGACAAACCCACGTTGCTCAAGCGTACTCTGCCAACCAGGAATCGGTTTATGCACTACGCCCTGCCCGCGCTCCTCACGCCATTCGCGCATA  <  NC_000913/1127801‑1127516

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.