New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 1127798136 (0.940)3 (0.020) 3/506 NT 2.2% intergenic (+69/‑41) yceM/murJ putative oxidoreductase/putative lipid II flippase
?NC_000913 = 1127801 136 (0.970)intergenic (+72/‑38) yceM/murJ putative oxidoreductase/putative lipid II flippase
Rejected: Frequency below/above cutoff threshold.

TTGGCAGAGTACGCTTGAGCAACGTGGGTTTGTCGGCTGTGCGCGGCACTTCATTGAATGTGTGCAAAACCAGACAGTTCCGCAAACCGCCGGCGAACAGGCCGTGCTGGCGCAACGTATCGTTGACAAGATCTGGCGCGATGCGATGAGTGAATAAACCCTGTAACATCTGGCGGTAGCAATTCACCATAATCCAGGTAGACTATTCGCCTCTTTCAGCGCCTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/1127573‑1127798
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcctgc‑‑‑‑AAGGCAGGCGCTGAAAGAGGCGAATAGTCTACCTGGATTATGGTGAATTGCTACCGCCAGATGTTACAGGGTTTATTCACTCATCGCATCGCGCCAGATCTTGTCAACGATACGTTGCGCCAGCACGGCCTGTTCGCCGGCGGTTTGCGGAACTGTCTGGTTTTGCACACATTCAATGAAGTGCCGCGCACAGCCGACAAACCCACGTTGCTCAAGCGTACTCTGCCAACCAGGAATCGGTTTATGCACTACGCCCTGCCCGCGCTCCTCACGCCATTCGCGCATA  <  NC_000913/1127801‑1127516
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     
TTGGCAGAGTACGCTTGAGCAACGTGGGTTTGTCGGCTGTGCGCGGCACTTCATTGAATGTGTGCAAAACCAGACAGTTCCGCAAACCGCCGGCGAACAGGCCGTGCTGGCGCAACGTATCGTTGACAAGATCTGGCGCGATGCGATGAGTGAATAAACCCTGTAACATCTGGCGGTAGCAATTCACCATAATCCAGGTAGACTATTCGCCTCTTTCAGCGCCTGCCTTGCAGGCAGGCGCTGAAAGAGGCGAATAGTCTACCTGGATTATGGTGAATTGCTACCGCC                                                                                                                                                                                                                                      <  1:714629/288‑1
                           GTTTGTCGGCTGTGCGCGGCACTTCATTGAATGTGTGCAAAACCAGACAGTTCCGCAAACCGCCGGCGAACAGGCCGTGCTGGCGCAACGTATCGTTGACAAGATCTGGCGCGATGCGATGAGTGAATAAACCCCTGTAACATCTGGCGGTAGCAATTCACCATAATCCAGGTAGACTATTCGCCTCTTTCAGCGCCTGC‑‑‑‑CTTGCAGGCGCTGAAAGAGGCGAATAGTCTACCTGGATTATGGTGAATTGCTACCGCCAGATGTTACAG                                                                                                                                                                                                                           <  1:417304/269‑1
                           GTTTGTCGGCTGTGCGCGGCACTTCATTGAATGTGTGCAAAACCAGACAGTTCCGCAAACCGCCGGCGAACAGGCCGTGCTGGCGCAACGTATCGTTGACAAGATCTGGCGCGATGCGATGAGTGAATAAACCCCTGTAACATCTGGCGGTAGCAATTCACCATAATCCAGGTAGACTATTCGCCTCTTTCAGCGCCTGC‑‑‑‑CTTGCAGGCGCTGAAAGAGGCGAATAGTCTACCTGGATTATGGTGAATTGCTACCGCCAGATGTTACAG                                                                                                                                                                                                                           >  2:417304/1‑269
                                                                                                                                                                                                                            CGCCTGC‑‑‑‑AAGGCAGGCGCTGAAAGAGGCGAATAGTCTACCTGGATTATGGTGAATTGCTACCGCCAGATGTTACAGGGTTTATTCACTCATCGCATCGCGCCAGATCTTGTCAACGATACGTTGCGCCAGCACGGCCTGTTCGCCGGCGGTTTGCGGAACTGTCTGGTTTTGCACACATTCAATGAAGTGCCGCGCACAGCCGACAAACCCACGTTGCTCAAGCGTACTCTGCCAACCAGGAATCGGTTTATGCACTACGCCCTGCCCGCCCTCCTCACGCCATTCac       >  1:817883/1‑286
                                                                                                                                                                                                                            CGCCTGC‑‑‑‑AAGGCAGGCGCCGAAAGAGGCGACTAGTCTACCTTGATTATGGTGAATTGCTACCGCCAGATGTTACAGGGTTTATTCACTCATCGCATCTGGCCAGATCTTGTCAACGTTACGTTGCGCCAGCACGGCCTGTTCGCCGGCGGTTTGCGGAACTGTCTGGTTGTGCACACATTCAATGAAGTGCCGCGCACAGCCGACAAACCCACGTTGCTCAAGCGTACTCTGCCAACCAGGAATCGGTTTATGCACTACGCCCTGCCCGCGCTCCTCACGCCATTCGCG      <  2:248218/289‑1
                                                                                                                                                                                                                               cgtC‑‑‑‑AAGGCAGGCGCTGAAAGAGGCGAATAGTCTACCGTGATTATGGTGAATTGCTACCGCCATATGTTACAGGGTTTATTCACTCATCGCATCGCGCCAGATCTTGTCAACGATACGTTGCGCCAGCACGGCCTGTTCGCCGGCGGTTTGCGGAACTGTCTGGTTTTGCACACATTCAATGAAGTGCCGCGCACAGCCGACAAACCCACGTTGCTCAAGCGTACTCTGCCAACCAGGAATCGGTTTATGCACTACGCCCTGCCCGCGCTCCTCACGCCATTCGCGCA    <  2:145756/285‑1
                                                                                                                                                                                                                               CTGG‑‑‑‑AAGGAAGGCGCTGAAAGAGGCGAATAGTCTACCTTGATGATTGTGAATTGCTACCGCAAGATGTTACAGGGTTTATTCACTCATCGCATCGCGCCAGATCTTGTCAACGATACGTGGGGCCAGCACGGCCTGTTCGCCGGCGGTTTGCGGAACTGTCTGGTTTTGCACACATTCAATGAAGGGCCGCGCACAGCCGACAAACCCACGTTGCTCAAGCGTACTCTGCCAACCAGGAATCGGTTTATGCACTACGCCCTGCCCGCGCTCCTCACGCCATTCGCGCAT   <  2:714629/289‑1
                                                                                                                                                                                                                               CTGC‑‑‑‑AAGGCAGGCGCTGAAAGCGGCGAATAGTCTACCTGGATTATGGTGAATTGCTACCGCCAGATGTTACAGGGTTTATTCACTCATCGCATGGCGCCAGATCTTGTCAACGATAAGTTGCGCCAGCACGGCCTGTTGGCCGGCGGTTTGCGGAACTGTCTGGTTTTGAACACATTCAATGAAGTGCCGCGCACAGCGGACAAACCCTCGTTGCTCAAGCGTACTCTGCCAACCAGGAATCGGTTTATGCACTACGCCCTGCCCGCGCTCCTCACGCCATTCGCGCAT   <  2:1032818/289‑1
                                                                                                                                                                                                                               CTGC‑‑‑‑AAGGCAGGCGCTGAAAGAGGCGAATAGTCTACCTGGATTATGGTGAATTGCTACCGCCAGATGTTACAGGGTTTATTCACTCATCGCATCGCGCCAGATCTTGTCAACGATACGTTGCGCCAGCACGGCCTGTTCGCCGGCGGTTTGCGGAACTGTCTGGTTTTGCACACATTCAATGAAGTGCCGCGCACAGCCGACAAACCCACGTTGCTCAAGCGTACTCTGCCAACCAGGAATCGGTTTATGCACTACGCCCTGCCCGCGCTCCTCACGCCATTCGCGCAT   <  1:149053/289‑1
                                                                                                                                                                                                                                TGC‑‑‑‑AAGGCAGGCGCTGAAAGAGGCGAATAGTCTACCTGGATTATGGTGAATTGCTACCGCCAGATGTTACAGGGTTTATTCACTCATCGCATCGCGCCAGATCTTGTCAACGATACGTTGCGCCAGCACGGCCTGTTCGCCGGCGGTTTGCGGAACTGTCTGGTTTTGCACACATTCAATGAAGTGCCGCCCAAAGCCGACAAACCCCCGTTGCCCAAGCGTACTCTGCCAACCAGGAATCGGTTTATGCACTACGCCCTGCCCGCGCCCCTCCCGCCATTCCCGCATA  >  2:762238/1‑289
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     
TTGGCAGAGTACGCTTGAGCAACGTGGGTTTGTCGGCTGTGCGCGGCACTTCATTGAATGTGTGCAAAACCAGACAGTTCCGCAAACCGCCGGCGAACAGGCCGTGCTGGCGCAACGTATCGTTGACAAGATCTGGCGCGATGCGATGAGTGAATAAACCCTGTAACATCTGGCGGTAGCAATTCACCATAATCCAGGTAGACTATTCGCCTCTTTCAGCGCCTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/1127573‑1127798
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcctgc‑‑‑‑AAGGCAGGCGCTGAAAGAGGCGAATAGTCTACCTGGATTATGGTGAATTGCTACCGCCAGATGTTACAGGGTTTATTCACTCATCGCATCGCGCCAGATCTTGTCAACGATACGTTGCGCCAGCACGGCCTGTTCGCCGGCGGTTTGCGGAACTGTCTGGTTTTGCACACATTCAATGAAGTGCCGCGCACAGCCGACAAACCCACGTTGCTCAAGCGTACTCTGCCAACCAGGAATCGGTTTATGCACTACGCCCTGCCCGCGCTCCTCACGCCATTCGCGCATA  <  NC_000913/1127801‑1127516

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.