New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1207790 =	41 (1.010)	9 (0.250)	9/252	3.0	19.3%	coding (290/630 nt)	stfP	e14 prophage; uncharacterized protein
	?	NC_000913	1209619 =	39 (1.090)					pseudogene (1/501 nt)	stfE	pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TGGTGGAGGCATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCAT  >  NC_000913/1207649‑1207927                                                                                                                                              |                                                                                                                                          ttgtgcAGGCGTCCGGTGCCAGCCGGGAGCAGGGGCGGGACGACGAGTTACTTACCGCACGTCGCGCGCGGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCtt                                                                                                                                          <  2:204412/141‑1 (MQ=17)  ggtggCGGCATCCGGTGCCAGCCTCGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTg                                                                                                                                         <  1:247353/143‑1 (MQ=255)       aGGCATCGGGTGCGAGCCTGGGGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTg                                                                                                                                    <  2:633846/143‑1 (MQ=255)            tCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGgaga                                                                                                                               <  1:187629/143‑1 (MQ=255)                        cTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGGTTGGGAGAAGGAGCAAACCt                                                                                                                   >  1:40136/1‑143 (MQ=255)                           gagaAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTGGGGAGAAGGAGCAAGACTCaa                                                                                                                >  1:210603/1‑143 (MQ=255)                               aGGCGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGGGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATgca                                                                                                            <  2:425974/143‑1 (MQ=255)                                   gcggcACGACCAGTTACTTACCGCACTTCGAGCGCTGCCGTTAAGCCGCACGAATACGCTTGGCGATCTCAACGCTGACGGCACTGTGCAAACCGCCATAGAAAAACATTGTTTTGAAGATAGAACAACCATCAATgcagcca                                                                                                        >  2:690313/1‑141 (MQ=255)                                             cAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGACTCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACAtt                                                                                              <  1:332962/143‑1 (MQ=255)                                              aGTTACTTACCGCATTTTGCGCCCTGCTGTTAAGCCGCAATGATCCGTTTGGCCATATCAAATCGGATGTCACTGTGCATACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAATCTCAATGCAGCAACGGCTACATTa                                                                                             <  2:92397/143‑1 (MQ=21)                                                tgacttacCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGGGCAAAACTCAATGCAGCAACGGCTACATTAgg                                                                                           <  1:511549/141‑1 (MQ=255)                                                  acttacCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGCAGGAGCAAAACTCAATGCAGCAACGGCTACCTTAGCAc                                                                                         >  2:16791/1‑143 (MQ=255)                                                   cttacCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACg                                                                                        <  2:550309/143‑1 (MQ=255)                                                        tggaCTTCGCGCGCTGCTGTTTAGCCGCAACAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCg                                                                                   <  2:366941/140‑1 (MQ=255)                                                        cGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCACCGGCTACATTAGGACGCACCg                                                                                   >  2:413145/1‑143 (MQ=255)                                                         gCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCgg                                                                                  >  1:284401/1‑143 (MQ=255)                                                          cACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCGAAACTCAATGCAGCCACGGCTACATTAGGACGCACCggg                                                                                 >  2:571818/1‑142 (MQ=255)                                                             ttCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAACCGGCTCTCGAAACCCTTGGGTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATGAGGACGCACCGGTTTc                                                                              >  2:694603/1‑143 (MQ=255)                                                             ttCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCTAAAACCTTGGCTTGGGAGAACGAGCAAAACTCACTGCACCAACAGCTACATTAGGACGCGCCGGttcc                                                                              >  2:576225/1‑141 (MQ=21)                                                                   cgcgGCTGTTAAGCCGCAAGAACCCGTTTGTCGTTATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGCGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCt                                                                        <  2:573662/143‑1 (MQ=37)                                                                          gTTAAGCCGCTAGAATCCGGTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCgg                                                                 <  1:259941/143‑1 (MQ=255)                                                                          gTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCgg                                                                 <  1:411898/143‑1 (MQ=255)                                                                             aggccgccGGAATCCGTTTGGCGACATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTGGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTa                                                              <  2:618669/141‑1 (MQ=255)                                                                                   cAAGACGCCGTTTGGCGAGATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATtg                                                        <  1:469310/143‑1 (MQ=255)                                                                                          ccGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTAt                                                 >  1:305267/1‑143 (MQ=255)                                                                                             tgtGGCGATGTGAATTCGGATGGCACTGTGCAAACGGCTCTCGAAAGCCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGa                                              <  2:722075/141‑1 (MQ=255)                                                                                                ggCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAACACTCAATGCAGCGACGGCTACATTAGGACGCACCGGTTTCATAGCTAGACCAGATATGACTGGCGGTATTGAGcg                                           >  2:32314/1‑142 (MQ=37)                                                                                                  cgacagcAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTGGGGAGAAGGAGCAAAACGCAATGCAGCCACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAAt                                         <  1:645653/137‑1 (MQ=39)                                                                                                   gagatCAAATCGGATGGCACTGGGCAAACGGCTCCCGAAAACCTGGGTTTGGGAGAAGTCGCAAAACGCAATGCAGCCACGGCTACATTAGGACGCACCGGGTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATc                                        <  1:640080/140‑1 (MQ=255)                                                                                                     tatCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAGCATTCGTTCAGGAGAAGCCGAAAACCTCAATGCAGCAACGGCTACATTAGGACGCACCGGCGTCCGTACTATACCGGTTATGATTGGTGGTATTGAGCAATCAg                                      <  2:554350/143‑1 (MQ=255)                                                                                                                    gaCTGGGCAAACGGCTCCCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTggg                       <  1:32822/142‑1 (MQ=255)                                                                                                                    cACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTAGTGAGCAATCAGGAGTCATTCAGTggg                       >  1:47608/1‑143 (MQ=255)                                                                                                                     aCTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCCATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGGGGTATTGAGCAACCAGTAATCATTCAGCgggg                      >  2:485771/1‑143 (MQ=255)                                                                                                                         tgCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCAGTTATGATTGGTGGGATTGAGCAATAAGTAATCATTCAGTGGGGGTgg                  >  2:377539/1‑143 (MQ=255)                                                                                                                            aaaCGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTaa                                   <  2:147088/123‑1 (MQ=255)                                                                                                                            aaaCGGCTCTCGAAAACCTTGGTTGGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTaa                                   >  1:147088/1‑123 (MQ=255)                                                                                                                                   tctcGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGGTATGATTGGTGGTATTGAGCAAGCAGTAATCATTCCGTGGGGGTGGCATTCCGCaa        >  2:221537/1‑143 (MQ=255)                                                                                                                                    ctcGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCaaa       >  2:657108/1‑143 (MQ=255)                                                                                                                                    ctcGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTACGACGAACCGGTCTCATAGCTATACCGGCTATGATTGGTGGTATTGCGCAATCAGTAATCATTCAGTAAGGGTGGCATGCCGCcaa       >  2:456152/1‑143 (MQ=255)                                                                                                                                     tcGCAAACCTTGGTTCCGGAGACGGAGCAAACCCCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCaaaa      <  1:16791/143‑1 (MQ=255)                                                                                                                                         aaaCCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCAt  <  2:305267/143‑1 (MQ=255)                                                                                                                                              |                                                                                                                                          TGGTGGAGGCATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCAT  >  NC_000913/1207649‑1207927

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.