New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 30683438 (0.940)3 (0.080) 3/272 6.0 7.7% coding (2499/2526 nt) ecpC ECP production outer membrane protein
?NC_000913 = 306863 36 (0.930)coding (2470/2526 nt) ecpC ECP production outer membrane protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GCCCAGGTTGTTTTGCTCACTGCCGCTCTGAGCGCAGTTACTGGCCAGATTAGCGCGAAAATTATCATCGTTATTAGTAGGTTAACTCTCATTCTCTTCTCCTGTCTGCGTCACCGCCGCCCACGATGAGAGGCCGCTGCAGACCACATCACCGACCCAGACGGCACCGCGCGCCTGGTTGAGTTCCAGAGCCACTTCGCAGGTTTTATTGCCACTGTAGCGAAAATCGATAGTGGGGTATTTCTTATCCACGTCCATGACAAACTCGCCGTTTTCA  >  NC_000913/306726‑307002
                                                                                                                                         |                                                                                                                                           
gCCCAGGTTGTTTTGCTCACTGCCGCTCTGAGCGCAGTTACTGGCCAGATTAGTGCGAAAATTATCATCGTTATTAGTAGGTTAACTCTCATTCTCTTCTCCTGTCTGCGTCACCGCCACCCACGATGAGAGGCCGCTGCAGa                                                                                                                                        <  2:38869/143‑1 (MQ=255)
  ccAGGTTGTTTTGCTCACTGCCGCTCTGAGCGCAGTTACTGGCCAGATTAGCGCGAAAATTCTCATCGTTATTAGTAGGTTAACACTCATTCTCATCTCCTGACTGCGACACCGCCGCACACGACGAGAGGCCGCTGCAGAcc                                                                                                                                      >  1:397096/1‑143 (MQ=255)
     ggTTGTTTTGCTCACTGCCGCTCTGAGCGCAGTTACTGGCCAGATTAGCGCGAAAATTATCATCGTTATTAGTAGGTTAACTCTCATTCTCTTCTCCTGTCTGCGTCACCCCCGCCCACGATGAGAGGCCGCTGCAGAccccc                                                                                                                                   >  2:553863/1‑140 (MQ=255)
            ttGCTCACTGCCGCTCTGAGCGCAGTTACTGGCCAGATTAGCGCGAAAATTATCATCGTTATTAGTAGGTTAACTCTCATTCTCTTCTCCTGTCTGCGTCACCGCCGCCCACGATGAGAGGCCGCTGCAGACCACATCACCGa                                                                                                                            <  1:107615/143‑1 (MQ=255)
                    tGCCGCTCTGAGCGCAGTTACTGGCCAGATTAGCGCGAAAATTATCATCGTTATTAGTAGGTTAACTCTCATTCTCTTCTCCTGTCTGCGTCACCGCCGCCCACGATGAGGGGCCGCTGCAGACCACATCACCGACCCAGACg                                                                                                                    >  1:529321/1‑143 (MQ=255)
                       cGCTCTGAGCGCAGTTACTGGCCAGATTAGCGCGAAAATTATCACCGTTATTAGTAGGTTAACTCTCATTCTCTTCTCCTGTCTGCGTCACCGCCGCCCACGATGAGAGGCCGCTGCAGACCACATCACCGACCCAGACGGCa                                                                                                                 >  1:473515/1‑143 (MQ=255)
                              aGCGCAGTTACTGGCCAGATTAGCGCGAAAATTATCATCGTTATTAGTAGGTTAACTCTCATTCTCTTCTCCTGTCTGCGTCACCGCCGCCCACGATGAGCGGCCGCTGCAGACCACAGCACCGACCCAGACGGCCCcgcgcg                                                                                                          >  2:536029/1‑143 (MQ=255)
                                 tcAGTTACTGGCCAGATTAGCGCGAATATTATCATCGTTATTAGTAGGTTAACTCTCATTCTCTTCGCCTGTCTGCGTCACCGCCGCCCACGATGAGAGGCCGCTGCAGACCACATCACCGACCCAGACGGCACCGCGCGCCt                                                                                                       <  1:344797/142‑1 (MQ=255)
                                 gcAGTTACTGGCCAGATTAGCGCGAAAATTATCATCGTTATTAGTAGGTTAACTCTCATTCTCTTCTCCTGACTGCGTCACCGCCGCCCACGATGAGAGGCCGCTGCAGACCACATCACCGACCCAGACGGCACCGGGCGCCt                                                                                                       >  1:659868/1‑143 (MQ=255)
                                   aGTTACTGGCCAGATTAGCGCGAAAATTATCATCGTTATTAGTAGGTTAACTCTCATTCTCTTCTCCTGTCTGCGTCACCGCCGCCCACGATGAGAGGCCGCTGCAGACCACATCACCGACCCAGACGGCACCGCGCGCCTgg                                                                                                     >  2:329377/1‑143 (MQ=255)
                                              aGATTAGCGCGAAAATTATCATCGTTATTAGTAGGTTAACTCTCATTCTCTTCTCCTGTCTGCGTCACCGCCGCCCACGATGAGAGGCCGCTGCAGACCACATCACCGACCCAGACGGCACCGCGCGCCTGGTTGAGTTcccg                                                                                          >  1:686025/1‑141 (MQ=255)
                                                     cgcgAAAATTATCATCGTTATTAGTAGGTTAACTCTCATTCTCTTCTCCTGTCTGCGTCACCGCCGCCCACGATGAGAGGCCGCTGCAGACCACATCACCGACCCAGACGGCACCGCGCGCCTGGTTGAGTTCCAGAGCCACt                                                                                   >  1:537352/1‑143 (MQ=255)
                                                       cgAAAATTATCATCGTTATTAGTAGGTTAACTCTCATTCTCTTCTCCTGTCTGCGTCACCGCCGCCCACGATGAGAGGCCGCTGCAGACCACATCACCGACCCAGACGGCACCGCGCGCCCGGTTGAGTTCCAGAGCCACTTc                                                                                 >  1:264947/1‑143 (MQ=255)
                                                                    cGTTATTAGTAGGTTAACTCTCATTCTCTTCTCCTGTCTGCGTCACCGCCGCCCACGATGCGAGGCCGCTGCAGACCACATCACCGACCCAGACGGCACCGCGCGCCTGGTTGCGTTCCAGAGCCACTTCGCCAGTTTCATTg                                                                    >  2:423415/1‑143 (MQ=255)
                                                                      ttattaGTAGGTTAACTCTCATTCTCTTCTCCTGTCTGCGTCACCGCCGCCCACGATGAGAGGCCGCTGCAGACCACATCCCCGACCCAGACGGCACCGCGCGCCTGGTTGAGTTCCAGAGCCACTTCGCAGGTTTTATTGcc                                                                  >  1:366153/1‑143 (MQ=255)
                                                                       tagtagtagGGTAGCTCTCTTTCTCGGCGCCTGTCTGCGTCACCGCCGCCCACGATGAGAGGCCGCTGCAGACCACATCACCGACCCAGACGGCACCGCGCGCCTGGTTGAGTTCCAGAGCCACTTCGCAGGTTTTATTGCCa                                                                 <  2:160416/140‑1 (MQ=255)
                                                                        attaGTAGGTTAACTCTCATTCTCTTCTCCTGTCTGCGTCACCGCCGCCCACGATGAGAGGCCGCTGCAGACCACATCACCGACCCAGACGGCACCGCGCGCCTGGTTGAGTTCCAGAGCCACTTCGCAGGTTTTATTGCCAc                                                                <  1:85688/143‑1 (MQ=255)
                                                                         ttaGTCGGTTTACTCTCATTCTCTCCTCCTTTCTGCGTCACCGCCGCCCACTATGAGAGGCCGCTGCAGACCACATCACCGACCCAGACTGCACCGCGCGCCTGGTTGAGTTCCAGAGCCACTTCGCAGGTTTTATTGCCACt                                                               <  2:273652/143‑1 (MQ=255)
                                                                          tagtagGTTAACTCTCATTCTCTTCTCCTGTCTGCGTCACCGCCGCCCACGACGTGGCAGCTCGGCAGACCGCATCCCCGACCCAGACGGCACCGCGCGCCTGGTTGAGTTCCAGAGCCACTTCGCAGGTTTTATTGCCACTg                                                              >  2:323159/1‑143 (MQ=255)
                                                                          tagtagGTTAACTCTCATTCTCCTCTCCTGTCTGCGTCACCGCCGCCCACGATGAGAGGCCGCTGCAGACCACATCACCGACCCAGACGGCACCGCGCGCCTGGTTGAGTTCCAGAGCCACTTCGCAGGTTTTATTGCCACTg                                                              <  1:22660/143‑1 (MQ=255)
                                                                                  tAACTCTCATTCTCTTCTCCTGTCTGCGTCACCGCCGCCCACGATGAGAGGCCGCTGCAGACCACATCACCGACCCAGACGGCACCGCGCGCCTGGTTGAGTTCCAGAGCCACTTCGCAGGCTTTCTTGACACTGTAGCGaaa                                                      >  1:37529/1‑143 (MQ=255)
                                                                                      tctcATTCTCTTCTCCTGTCTGCGTCACCGCCGCCCACGATGAGAGGCCGCTGCAGACCACATCACCGACCCAGACGGCACCGCGCGCCTGGTTGAGTTCCAGAGCCACTCCGCAGGTTTTAGTGCCACTGGAGCGAAAATCg                                                  >  2:30628/1‑143 (MQ=255)
                                                                                        tcATTCTCTTCTCCTGTCTGCGTCACCGCCGCCCACGATGAGAGGCCGCTGCAGACCACATCACCGACCCAGACGGCACCGCGCGCCTGGTTGAGTTCCAGAGCCACTTCGCAGGTTTTATTGCCACTGTAGCGAAAATCGAt                                                <  1:371158/143‑1 (MQ=255)
                                                                                          aTTCTCTTCTCCTGTCTGCGTCACCGCCGCCCACGATGAGAGGCCGCTGCAGACCACATCACCGACCCAGACGGCACCGCGCGCCTGGTTGAGTTCCAGAGCCACTTCGCAGGTTTTATTGCCACTGCAGCGCAAATCGATAg                                              >  2:641189/1‑143 (MQ=255)
                                                                                             ctcttctcCTGTCGGCGTCGCCGCCGAACTCGAGGAGGTGCCGCTGCAGGCCACATCACCGACCCAGACGGCACCGCGCGCCTGGTTGAGTTCCAGAGCCACTTCGCAGGTTTTATTGCCACTGTAGCGAAAATCGATAGTgg                                           <  2:7150/143‑1 (MQ=255)
                                                                                              tctgctcCTGTCTGCGTCACCGCCGACCACGCCGAGAGGCGGCTGCGGTCCCCATCAGCGCCCCAGGCGTCACCGCGCGCCTGGTTGAGTGCCAGAGCTACTTCGCAGGTTTTATTGTCACTGTAGCGAAAATCTATAGTggg                                          <  2:413744/143‑1 (MQ=255)
                                                                                              tctccgccTGTCTGCGTCACCGCCGCCCAGGATGAGAGGTCGCGGCAGACCACATCGCCGCCCCAAACGGCACCGCGCGCCTGGGTGAGTTCCAGAGCCACTTCGCAGGTTTTATTGCCACTGTAGCGAAAATCGATAGTggg                                          <  1:650969/137‑1 (MQ=255)
                                                                                                         cTGCGTCCCCGCCGCCCGCGATGAGGGGCGGCTGCAGACCACATCACCGACCCAGACGGCACCGCGCGCCGGGTTGAGTTCCAGAGCCACTTCGCAGGTTTTATTGCCACTGTAGCGAAAATCGATAGTGGGGTATTTCTTAt                               <  2:21061/143‑1 (MQ=255)
                                                                                                            cGTCACCGCCGCCCACGATGAGAGGCCGCTGCAGACCACATCACCGACCCAGCCGGCACCGCGCGCCTGGTTGAGTTCCAGAGCCACTTCGCAGGATTTATTGCCACTGTAGCGAAAATCGAAAGAGGGGAATTTCTTATcga                            >  1:487614/1‑141 (MQ=255)
                                                                                                             gTCACCGCCGCCCACGATGAGGGGCCGCCGCAGACCACATCCCCGACCCAGACGGCACCGCGCGCCTGGTTGAGTTCCAGAGCCACTTCGCAGGTTTTATTGCCACTGTAGCGAAAATCGATAGTGGGGTATTTCTTATCCAc                           <  2:397096/143‑1 (MQ=255)
                                                                                                                   gccgccAACGAGGGGAGGCCGCTGCAGACCACATCACCGACCCAGACGGCACCGCGCGCCTGGTTGAGTTCCAGAGCCACTTCGCAGGTTTTATTGCCACTGTAGCGAAAATCGATAGTGGGGTATTTCTTATCCACGTCCAt                     <  2:659868/143‑1 (MQ=255)
                                                                                                                         cACGATGAGAGGCCGCTGCAGACCACATCACCGACCCAGACGGCACCGCGCGCCTGGTTGAGTTCCAGAGCCACTTCGCAGGTTTTATTGCCACTGTAGCGAAAATCGATAGTGGGGTATTTCTTATCCACGTCCATGACaaa               <  1:388683/143‑1 (MQ=255)
                                                                                                                            gATGAGAGGCCGCTGCAGACCACATCGCCGACCCAGACGGCACCGCGCGCCTGGTTGAGTTCCAGCGCCACTTCGCAGGTTTTATTGCCACTGTAGCGAAAATCGATAGTGGGGTATTTCTTATCCACGTCCATGACAAACTc            <  2:393672/143‑1 (MQ=255)
                                                                                                                            gATGAGAGGCCGCTGCAGACCACATCACCGACCCAGACGGCACCGCGCGCCTGGTTGAGTTCCAGAGCCACTTCGCAGGTTTTATTGCCACTGTAGCGAAAATCGATAGTGGGGTATTTCTTATCCACGTCCATGACAAACTc            >  1:572691/1‑143 (MQ=255)
                                                                                                                                   ggCCGTTGCAGACCACATCACCTCCCCAGACGGCACCGCGCGCCTGGTTGAGTTCCAGAGCCACTTCGCAGGTTTTATTGCCACTGTAGCGAAAATCGATAGTGGGGTATTTCTTATCCACGTCCATGACAAACTCGCCGttt     <  2:97367/143‑1 (MQ=255)
                                                                                                                                   ggCCGCTGCAGACCACATCCCCGCCCCCGGCTGCGCCGCGCGCCTGGTTGAGTTCCAGAGCCACTTCGCAGGTTTTATTGCCACTGTAGCGAAAATCGATAGTGGGGTATTTCTTATCCACGTCCATGACAAACTCGCCGttt     <  2:97492/143‑1 (MQ=255)
                                                                                                                                      cGCTGCAGACCACATCACCGACCCAGACGGCACCGCGCGCCTGGTTGAGTTCCAGAGCCACTTCGCAGGTTTTATTGCCACTGTAGCGAAAATCGATAGTGGGGTATTTCTTATCCACGTCCATGACAAACTCGCCGTTTTCa  <  1:643807/143‑1 (MQ=255)
                                                                                                                                         |                                                                                                                                           
GCCCAGGTTGTTTTGCTCACTGCCGCTCTGAGCGCAGTTACTGGCCAGATTAGCGCGAAAATTATCATCGTTATTAGTAGGTTAACTCTCATTCTCTTCTCCTGTCTGCGTCACCGCCGCCCACGATGAGAGGCCGCTGCAGACCACATCACCGACCCAGACGGCACCGCGCGCCTGGTTGAGTTCCAGAGCCACTTCGCAGGTTTTATTGCCACTGTAGCGAAAATCGATAGTGGGGTATTTCTTATCCACGTCCATGACAAACTCGCCGTTTTCA  >  NC_000913/306726‑307002

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.