New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	3717215 =	35 (0.860)	3 (0.080)	3/260	5.8	8.2%	intergenic (+9/‑95)	yiaD/ghrB	multicopy suppressor of bamB; outer membrane lipoprotein/glyoxylate/hydroxypyruvate reductase B
	?	NC_000913	3717245 =	35 (0.940)					intergenic (+39/‑65)	yiaD/ghrB	multicopy suppressor of bamB; outer membrane lipoprotein/glyoxylate/hydroxypyruvate reductase B
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CCTTGGCCCGGCTAACCCAATCGCCAGCAACAGCACCGCAGAAGGTAAGGCGCAAAACCGCCGTGTAGAAATTACCTTAAGCCCGCTGTAATCCCTTTCATGCCAGGTGATGCAGAAATCACCTGGCATTCTTCAGTTTTCCTTCATCATATTTCAGGCTAAGGTGATCGCCTTATCAGTGAATGGAGAGAAGCATGAAGCCGTCCGTTATCCTCTACAAAGCCTTACCTGATGATTTACTGCAACGCCTGCAAGAGCATTTCA  >  NC_000913/3717116‑3717379                                                                                                                                  |                                                                                                                                       ccTGGGTCCGGCTAGCCCAGTCGCCAGCAACAGCACCGCAGAAGGTAAGGCGCAAAACCGCCGTGTAGAAATTACCTTAAGCACGCTGTAATCCCTTTCATGCCAGGTGATGCAGAAATCACCTGGCATTCTTCAGTTTTCCt                                                                                                                           <  2:259145/143‑1 (MQ=255)  cTTGGCCCGGCTAACCCAATCGCCAGCAACAGCACCGCAGAAGGTAAGGCGCAAAACCGCCGTGTAGAAATTACCTTAAGCCCGCTGTACTCCCTTTCCTGCCCGGTCTCGCACCACTCCCCTTGCATTCTCCAGtcatcatt                                                                                                                          >  1:261637/1‑136 (MQ=255)   ttGGCCCGGCTAACCCAATCGCCAGCAACAGCACCGCAGAAGGTAAGGCGCAAAACCGCCGTGTAGAAATTACCTTAAGCCCGCTGTAATCCCTTTCATGCCAGGTGATGCAGAAATCACCTGGCATTCTTCAGTTTTCCTtc                                                                                                                         <  1:399990/143‑1 (MQ=255)    tGGCCCGGCTAACCCAATCGCCAGCAACAGCACCGCAGAAGGTAAGGCGCAAAACCGCCGTGTAGAAATTACCTTAAGCCCGCTGTAATCCCTTTCATGCCAGGTGATGCAGAACTCACCTGGCATTCTGCAGTTTTCCTtca                                                                                                                        >  2:494274/1‑143 (MQ=255)      gCCCGGCTAACCCAATCGCCAGCAACAGCACCGCAGAAGGTACGGCGCAAAACCACCGTGTACACAATACATTAAGCCCGCTGTAATCCCTTTCATGCCAGGTGATGCAGAAATCACCTGGCATTCTACAGTTTTCCCtcagc                                                                                                                      >  2:290851/1‑141 (MQ=255)         cGGCTAACCCAATCGCCAGCAACAGCACCGCAGAAGGTAAGGCGCAAAACCGCCGTGTAGAAATTACCTTAAGCCCGCTGTAATCCCTTTCATGCCAGGTGATGCAGAAATCACCTGGCCGTCTGCAGTTTGCCTTCCTAata                                                                                                                   >  1:80309/1‑143 (MQ=255)            cTAACCCAATCGCCAGCAACAGCACCGCAGAAGGTAAGGCGCAAAACCGCCGTGTAGAAATTACCTTAAGCCCGCTGTAATCCCTTTCATGCCAGGTGATGCGGAAATCACCTGGCATTCTTCAGTTTTCCTTCATCATAttt                                                                                                                <  2:374224/143‑1 (MQ=255)              aaCCCAATCGCCAGCAACAGCACCGCAGAAGGTAAGGCGCAAAACCGCCGTGTAGAAATTACCTTAAGCCCGCTGTAATCCCTGTCATGCCAGGGGATGCAGAAATCACCAGGCATTATACAGTTTTACTTCAACATCtttaa                                                                                                              >  1:53887/1‑141 (MQ=255)                cccAATCTCCAGCAACTTTACCGCAGAAGGTAAGGCGCAAAACCGCAGTGTAGAAATTACCTTAAGCCCGCTGTAATCCCTTTCATGCCAGGTGATGCCGAAATCACCTGGCATTCTTCAGTTTTCCTTCATCATATTTCAgg                                                                                                            <  2:584955/143‑1 (MQ=255)                    aTCGCCAGCAACAGCACCGCAGAAGGTAAGGCGCAAAACCGCCGTGTAGAAATTACCTTAAGCCCGCTGTAATCCCTTTCATGCCAGGTGATGCAGAAATCACCTGGCATTCTTCAGTTTTCCTTCATCATATTTCAGGCTaa                                                                                                        <  1:344254/143‑1 (MQ=255)                    aTCGCCAGCAACAGCACCGCAGAAGGTAAGGCGCAAAACCGCCGTGTAGAAATTACCTTAAGCCCGCTGTAATCCCTTTCATGCCAGGTGATGCAGAAATCACCTCGCACTCGTCAGTCTTCCGTCCTCATATTTCAGGCTaa                                                                                                        >  2:295250/1‑143 (MQ=255)                                  cACCGCAGAAGGTAAGGCGCAAAACCGCCGTGTAGAAATTACCTTAAGCCCGCTGTAATCCCTTTCATGCCAGGTGATGCAGAAATCACCTGGCATCCTTCAGTTTTCCTTCATCATATTTCAGGCTAAGGTGATCGCCTGAt                                                                                          >  1:690930/1‑143 (MQ=255)                                      ggagtaGGTGAGGCGCAAGTCCGCCGTGTAGAGCCTACCGTAAGCCCGCTGTAATCCCGTTCATGGCTGGTGATGCAGAACTCACCTGGCATTCTTCAGTTTTCCTTCATCTTATTTCAGGCTAAGGTGATCGCCTTATCAGt                                                                                      <  2:477442/138‑1 (MQ=255)                                         gAATGTAAGGCGCAAAACCGCCGTGTAGAAATTACCTTAAGCCCGCTGTAATCCCTTTCATGCCAGGTGATGCAGAAATCACCTGGCATTCTTCAGTTTTCCTTCATCATATTTCAGGCTAAGGTGATCGCCTTATCAGTGaa                                                                                   <  1:434954/143‑1 (MQ=255)                                          aaGGTAAGCGGCAAAGCCGCCGTGTAGAGATTACCTTAAGCCCGCTGTAATCCCTTTCATGCCAGGTGATGCAGAAATCACCTGGCATTCTTCAGTTTTCCTTCATCATATTTCAGGCTAAGGTGATCGCCTTATCAGTGAAt                                                                                  <  1:613860/143‑1 (MQ=255)                                             gTAAGGCGCAGAACCGCCGTGTAGAAATTACCTTAAGCCCGCTGTAATCCCTTTCATGCCAGGTGATGCAGAAATCACCTGGCATTCTTCAGTTTTCCTTCATCATATTTCAGGCTAAGGTGATCGCCTTATCAGTGAATGga                                                                               <  1:705952/143‑1 (MQ=255)                                             gTAAGGCGCAAAACCGCCGGGGAGAAATGACCGTAAGCCCGCTGTAATCCCTTGCATGCCAGGTGATGCAGGAATCACCTGGCATTCTTCAGTTTTCCTTCATCATATTTCAGGCTAAGGTGATCGCCTTATCAGTGAATGga                                                                               <  1:639815/143‑1 (MQ=255)                                               aaGGCGCAAAACCGCCGTGTAGAAATTACCTTAAGCCCGCTGTAATCCCTTTCATGCCAGGTGATGCAGAAATCACCTGGCATTCTTCAGTTTTCCTTCATCATATTTCAGGCTAAGGTGATCGCCTTATCAGTGAATGgaga                                                                             <  2:35219/143‑1 (MQ=255)                                                       aaaCCGCCGTGTAGAAATTACCTTGAGCCCGCTGTAATCCCTTTCATGCCAGGTGATGCCGAAATCACCTGGCATTCTTCAGTTGTCCTTCATCATATTGCAGGCTAAGGTGATCGCCTTATCAGTGAATGGACAGAAGCATg                                                                     <  2:359918/143‑1 (MQ=255)                                                           cgccgTGTAGAAAGTACCTGAAGCCCGCTGTAATCCTTTTCATGCCAGGTGATGCAGAAATCACCTGGCATTCTTCAGTTTTCCTTCATCATATTTCAGGCTAAGGTGATCGCCTTATCAGTGAATGGAGAGAAGCATGAAGc                                                                 <  2:190960/143‑1 (MQ=255)                                                            gccgTGTAGAAATTACCTTAAGCCCGCTGTAATCCCTTTCATGCCAGGTGATGCAGAAATCACCTGGCATTCTTCAGTTTTCCTTCATCATATTTCAGGCTCACGTGATCGCCTTCTCAGTGAATGGAGGGCAGCATgccgcc                                                                >  1:329949/1‑138 (MQ=255)                                                               gtgtAGAAATTACCTTAAGCCCGCTGTAATCCCTTTCATGCCAGGTGATGCAGAAATCACCTGGCATTCTTCAGTTTTCCTTCATCATATTTCAGGCTAAGGTGATCGCCTTATCAGTGAATGGAGAGAAGCATGAAGccgtc                                                             <  2:647832/143‑1 (MQ=255)                                                                  tAGAAATTACCTTAAGCCCGCTGTAATCCCTTTCATGCCAGGTGATGCAGAAATCACCTGGCATTCTTCAGTTTTCCTTCATCATATTTCAGGCTAAGGTGATCGCCTTATCAGTGAATGGAGAGAAGCATGAAGccgtccgt                                                          <  1:11831/143‑1 (MQ=255)                                                                        ttACCTTAAGCCCGCTGTAATCCCTTTCATGCCAGGTGATGCAGAAATCACCTGGCATTCTTCAGTTTTCCTTCATCATATTTCAGGCTAAGGTGATCGCCTTATCAGTGAATGGAGAGAAGCATGAAGCCGTCGGTTAGCct                                                    >  1:578573/1‑143 (MQ=255)                                                                           ccTTTAGCCCTCTGTAATCCCTTGCATGCCAGGTGATGCAGAAATCACCTGGCATTCTTCAGTTTTCCTTCGTCATCTTTCAGGCTAAGGTGATCGCCTTATCAGTGAATGGAGAGAAGCATGAAGCCGTCCGTTATCCTCTa                                                 <  2:10087/143‑1 (MQ=255)                                                                            cTTAAGCCCGCTGTAATCCCTTTCATGCCAGGTGATGCAGAAATCACCTGGCATTCTTCAGTTTTCCTTCATCATATTTCAGGCTAAGGTGATCGCCTTATCAGTGACTGGAGAGCAGCATGAAGCCGTCCGTTATCCTCTAc                                                >  2:627397/1‑143 (MQ=255)                                                                                   cccctttAATCCCTTTCATGCCAGGTGATGCAGAAATCACCTGGCATTCTTCAGTTTTCCTTCATCATATTTCAGGCTCAGGTGATCGCCTTATCAGTGAATGGATAGAAGCATGAAGCCGTCCGTTATCCTCTACAAAGCCt                                         <  1:65963/137‑1 (MQ=255)                                                                                            tCCCTTTCATGCCAGGTGATGCAGAAATCACCTGGCATTCTTCAGTTTTCCTTCATCATATTTCAGGCTAAGGTGAGCGCCTTATCAGTGACCGGAGAGAAGCATGAAGCCGTCCGTTATCCTCTACAAAGCCTTACCtgatg                                >  1:199174/1‑143 (MQ=255)                                                                                                tttCATGCCAGGTGATGCAGAAATCACCTGGCATTCTTCAGTTTTCCTTCATCATATTTCAGGCTAAGGTGATCGCCTTATCAGTGAATGGAGAGAAGCATGAAGCCGTCCGTTATCCTCTACAAAGACTTAACTGAGGGttt                            >  1:503186/1‑143 (MQ=255)                                                                                                 tgcATGCCCGGTGATGCAGAAAGCACCTGGCATTCTTCAGTTTTCCTTCATCATATTTCAGGCTACGATGATCTCCTTATCAGTGAATGGAGAGACGCATGAAGCCGTCCGTTATCCTCTACAAAGCCTTACCTGATGATTTa                           <  2:48596/141‑1 (MQ=255)                                                                                                    aTGCCACGTCATGCAGCAATCACCTGGCATTCTTCAGTTTTCCTTCATCATATTTCAGGCTAAGGTGATCGCCTTATCAGTGAATGGACAGAAGCATGAAGCCGTCCGTTATCCTCTACAACGCCTTACCTGATGATTTACTg                        <  2:549391/143‑1 (MQ=255)                                                                                                             gATGCAGAATTCACCTGGCATTCTTCACTTTTCCTTCATCATATTTCAGGCTAAGGTGATCGCCTTATCAGTGAATGGAGAGAAGCATGAAGCCGTCCGTTATCCTCTACAAAGCCTTACCTGATGATTTACTGCAACGCCTg               <  2:23892/143‑1 (MQ=255)                                                                                                                  aGAAATCACCTGGCATTCTTCAGTTTTCCTTCATCATATTTCAGGCTAAGGTGATCGCCTTATCAGTGGATGGAGAAAAGCATGAAGCCGTCCGTTATCCTCTACAAAGCCTTACCTGCTGATTTACTGCAACGCCTGCAaga          >  1:39975/1‑143 (MQ=255)                                                                                                                  aGAAATCACCTGGCATTCTTCAGTTTTCCTTCATCATATTTCAGGCTAAGGTGATCGCCTTATCAGTGAATGGAGAGAAGCATGAAGCCGTCCGTTATCCTCTACAAAGCCTTACCTGATGCCTTACTGCAACGCCTGCAaga          >  2:657921/1‑143 (MQ=255)                                                                                                                     aaTCACCTGGCATTCTTCAGTTTTCCTTCATCATATTTCAGGCTAAGGTGATCGCCTTATCAGTGAATGGAGAGAAGCATGAAGCCGTCCGTTATCCTCTACAAAGCCTTACCTGATGATTTACTGCAACGCCTGCAAGAGCa       <  1:709897/143‑1 (MQ=255)                                                                                                                          ccTGGCATTCTTCAGTTTTCCTTCATCATATTTCAGGCTAAGGTGATCGCCTTATCAGTGAATGGAGAGAAGCATGAAGCCGTCCGTTATCCTCTACAAGGCCTTACCTGATGATTTACTGCAACGCCTGCAAGAGCATTTCa  >  1:345423/1‑143 (MQ=255)                                                                                                                                  |                                                                                                                                       CCTTGGCCCGGCTAACCCAATCGCCAGCAACAGCACCGCAGAAGGTAAGGCGCAAAACCGCCGTGTAGAAATTACCTTAAGCCCGCTGTAATCCCTTTCATGCCAGGTGATGCAGAAATCACCTGGCATTCTTCAGTTTTCCTTCATCATATTTCAGGCTAAGGTGATCGCCTTATCAGTGAATGGAGAGAAGCATGAAGCCGTCCGTTATCCTCTACAAAGCCTTACCTGATGATTTACTGCAACGCCTGCAAGAGCATTTCA  >  NC_000913/3717116‑3717379

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.