| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 4,277,820 | G→T | G118* (GGA→TGA) | soxR → | redox‑sensitive transcriptional activator of soxS; autorepressor |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,277,820 | 0 | G | T | 87.8% | 101.7 / ‑5.4 | 42 | G118* (GGA→TGA) | soxR | redox‑sensitive transcriptional activator of soxS; autorepressor |
| Reads supporting (aligned to +/- strand): ref base G (1/4); new base T (20/16); total (22/20) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.84e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.93e-01 | |||||||||||
GACCATTGGTGAAGCGTTTGGCGTGTTGCCCGAAGGGCATACGTTAAGTGCGAAAGAGTGGAAACAGCTTTCGTCCCAATGGCGAGAAGAGTTGGATCGGCGCATTCATACCTTAGTGGCGCTGCGTGACGAACTGGACGGATGTATTGGTTGTGGCTGCCTTTCGCGCAGTGATTGCCCGTTGCGTAACCCGGGCGACCGCTTAGGAGAAGAAGGTACCGGCGCACGCTTGCTGGAAGATGAACAAAACTAAAGCGCCACAAGGGCGCTTTAGTTTGT > NC_000913/4277681‑4277959 | gACCATTGGTGAAGCGTTTGGCGTGTTGCCCGAAGGGCATACGTTAAGTGCGAAAGAGTGGAAACAGCTTTCGTCCCAATGGCGAGAAGAGTTGGATCGGCGCATTCATACCTTAGTGGCGCTGCGTGACGAACTGGACTGAt > 2:294762/1‑143 (MQ=255) aTTGGTGAAGCGTTTGGCGTGTTGCCCGAAGGGCATACGTTAAGTGCGAAAGAGTGGAAACAGCTTTCGTCCCAATGGCGAGAGGAGTTGGATCGGCGCATTCATACCTTAGTGGCGCGGCGTGACGAACCGGACTGACGTAt > 2:718197/1‑143 (MQ=255) gTGAAGCGTTTGGCGTGTTGCCCGAAGGGCATACGTTAAGTGCGAAAGAGTGGAAACAGCTTTCGTCCCAATGGCGAGAAGAGTTGGATCGGCGCATTCATACCTTAGTGGCGCTGCGTGACGAACTGGACTGATGTATTGGt > 2:486253/1‑143 (MQ=255) aaGCGTTTAGCGTGTTGTTTGAAGGGTATACGTTAAGTGCGAAAGAGTGGAAACAGCTTTCGTCCCAATGGCGAGAAGAGTTGGATCGGCGCATTCATACCTTAGTGGCGCTGCGTGACGAACTGGACTGATGTATTGGTtgt < 1:231224/143‑1 (MQ=255) gCGTTTGGCGTGTTGCCCGAAGGGCATACGTTAAGTGCGAAAGAGTGGAAACAGCTTTCGTCCCAATGGCGAGAAGAGTTGGATCGGCGCATTCATACCTTAGTGGCGCTGCGTGACGAACTGGACTGATGTATTGGTTGTgg < 1:411503/143‑1 (MQ=255) ttGGCGTGTTGCCCGAAGGGCATACGTTAAGTGCGAAAGAGTGGAAACAGCTTTCGTCCCAATGGCGAGAAGAGTTGGATCGGCGCATTCATACCTTAGTGCCGCTGCGTGACGAACTGGACTGACGTCTTGGTGGTGGCTGc > 1:513258/1‑143 (MQ=255) cttgtTGCCCGAAGGGCATACGTTAAGTGCGAAAGAGTGGAAACAGCTTTCGTCCCAATGGCGAGAAGAGTTGGATCGGCGCATGCATACCTTAGTGGCGCTGCGTGACGAACTGGACTGATGTATTGGTTGTGGCTGCCttt < 2:362840/141‑1 (MQ=255) ggccGAAGGGCATACGGTGGGTGGGAAAGAGTGTAAACAGCTGTCGGCCCAACGGCGGGAAGAGTTGGATCGGCGCATTCATACCTTGGTGGCGCGGCGTGACGAACTGGACGGATGTATTGGTTGTGGCTGCCTTTCGCGCa < 2:283699/141‑1 (MQ=255) cGAAGGGCATACGTTAAGTGCGAAAGAGTGGAAACAGCTTTCGTCCCAATGGCGAGAAGAGTTGGATCGGCGCATTCATACCTTAGTGGCGCTGCGTGACGAACTGGACTGATGTATTGGTTGTGGCTGCCTTTCGCGCAGTg > 1:313731/1‑143 (MQ=255) gCATACGTTAAGTGCGAAAGAGTGGAAACAGCTTTCGTCCCAATGGCGAGAAGAGTTGGATCGGCGCATTCGTACCTTAGTGGCGCTGCGTGAGGACCTGGACTGATGTCTTGGTTGTGGCTGGCTTTCGCGCGGTGATTggc > 2:107473/1‑141 (MQ=255) tACGTTAAGTGCGAAAGAGTGGAAACAGCTTTCGTCCCAATGGCGAGAAGAGTTGGATCGGCGCATTCCTCCCTTAGTGGCGCTGCGTGACGAACTTTACGTATGGATTGGTTGTGGCTGCCTTTCGCGCAGTGATTGCCCGt > 1:199418/1‑143 (MQ=255) aCGTTAGGTGCGAGAGCGGCGAAACAGCTTTCGTCCCAGTGGCGAGAAGAGGTGGATCGGCGCATTCATGCCTTAGTGGGGCTGCGTGACGAACTGGACTGGTGTGTGGGTGGTGGCTGCCTTGCGCGCAGTGATTGCCCGtt < 2:72420/143‑1 (MQ=255) ttAAGTGCGAAAGAGTGGAAACAGCTTTCGTCCCAATGGCGAGAAGAGTTGGATCGGCGCAGTCATACCTTAGTGGCGCTGCGTGACGAACTGGACAGATGTAATGGATGTGGCAGCCATTAGCGCAGTGACTGCCCGTTGCg > 2:552561/1‑143 (MQ=255) aaGTGCGAAAGAGTGGAAACAGCTTTCGTCCCAATGGCGAGAAGAGTTGGATCGGCGCATTCATACCTTAGTGGCGCTGCGTGACGAACTGGACTGATGTATTGGTTGTGGCTGCCttt < 1:187559/119‑1 (MQ=255) aaGTGCGAAAGAGTGGAAACAGCTTTCGTCCCAATGGCGAGAAGAGTTGGATCGGCGCATTCATACCTTAGTGGCGCTGCGTGACGAACTGGACTGATGTATTGGTTGTGGCTGCCttt > 2:187559/1‑119 (MQ=255) tGCGAAAGAGTGGAAACAGCTTTCGTCCCAATGGCGAGAAGAGTTGGATCGGCGCATTCATACCTTAGTGGCGCTGCGTGACGAGGTGGATTCATGTTGTGGTTGTGGCTGCCTTTCGCGCAGTGATTGCCCGTTGCGTAAca > 1:531151/1‑142 (MQ=255) aaaGAGTGGAAACAGCTTTCGTCCCAATGGCGAGAAGAGTTGGATCGGCGCATTCATACCTTAGTGGCGCTGCGTGACGAACTGGACTGATGTATTGGTTGTGGCTGATTTCCGCGCTGCGATTGCCCGTTGCGTAACCCggg > 1:132669/1‑143 (MQ=255) aCAGCTTTCGTCCCAATGGCGAGAAGAGTTGTATCGGCGCATTCATACCTTAGTGGCGCTGCGTGACGAACTGGACTGATGTATTGGTTGTGGCTGCCTTTCGCGCAGTGATTGCCCGTTGCGTAACCCGGGCGACCGCTTAg < 1:662626/143‑1 (MQ=255) aCAGCTTTCGTCCCAATGGCGAGAAGAGTTGGATCGGCGCATTCATACCTTAGTGGCGCTGCGTGACGAACTGGACTGATGTATTGGTTGTGGCTGCCTTTCGCGCAGTGCTTGCCCGTTGCGTAACCCGGGCGACCGCTTAg > 1:221570/1‑143 (MQ=255) aCAGCTTTCGTCCCAATGGCGAGAAGAGTTGGATCGGCGCATTCATACCTTAGTGGCGCTGCGTGACGAACTGGACTGATGTATTGGTTGTGGCTGCCTTTCGCGCAGTGATTGCCCGTTGCGTAACCCGGGCGACCGCTTAg > 1:630943/1‑143 (MQ=255) cAGCTTTCGTCCCAATGGCGAGAAGAGTTGGATCGGCGCATTCATACCTTAGTGGCGCTGCGTGACGAACTGGACTGATGTATTGGTTGTGGCTGCCTTTCGCGCAGTGATTGGCCGTTGCGTAACCCGGGCGGCCGCTTAgg > 1:491390/1‑143 (MQ=255) ttCGTCCCAATGGCGAGAAGAGTTGGATCGGCGCATTCATACCTTAGTGGCGCTGCGTGACGGACTGGACTGATGTATTGGTTGTGGCTGCCTTTCGCGCAGTGATTGCCCGTTGCGTAACCCGGGCGATCGCTTCTGagaag > 2:98912/1‑143 (MQ=255) ttCGTCCCAATGGCGAGAAGAGTTGGATCGGCGCATTCATACCTTAGTGGCGCTGCGTGACGAACTGGACTGATGTATTGGTTGTGGCTGCCTTTCGCGCAGTGATTGCCCGTTGCGTAACCCGGGCGACCGCTTAGGagaag < 1:499626/143‑1 (MQ=255) ttCGTCCCAATGGCGAGAAGAGTTGGATCGGCGCATTCATACCTTAGTGGCGCTGCGTGACGAACTGGACTGATGTATTGGTTGTGGCTGCCTTTCGCGCAGTGATTGCCCGTTGCGTAACCCGGGCGACCGCTTAGGagaag < 1:486253/143‑1 (MQ=255) cgccccAATGGCGAGAAGAGTTGGATCGGCGCATTCATACCTTAGTGGCGCTGCGTGACGAACTGGACTGATGTATTGGTTGTGGCTGCCTTTCGCGCAGTGATTGCCCGTTGCGTAACCCGGGCGACCGCTTAGGAgaagaa < 1:272606/140‑1 (MQ=255) cAATGGCGAGAAGAGTTGGATCGGCGCATTCATACCTTCGTGGCGCTGCGTGACCAACTGGACTGACGGCTTGCTTGTGGCTGCCTTTCGCCCCCTGATTGCGCGCTCCGTAACCCGGCCCACCCCCTCGGAGAAGAAGCTAc > 2:568168/1‑143 (MQ=255) cAATGGCGAGAAGAGTTGGATCGGCGCATTCATACCTTAGTGGCGCTGCGTGACGAACTGGACTGATGTATTGGTTGTGGCTGCCTTTCGCGCAGTGATTGCCCGTTGCGTAACCCGGGCGACCGCTTAGGAGAAGAAGGTAc < 1:192829/143‑1 (MQ=255) aTGGCGAGAAGAGTTGGATCGGCGCATTCATACCTTAGTGGCGCTGCGTGACGAACTGGACTGATGTATTGGTTGTGGCTGCCTTTCGCGCAGTGATTGCCCGTTGCGTAACCCGGGCGACCGCTTAGGAGAAGAAGGTACCg < 1:547002/143‑1 (MQ=255) gTTGGATCGGCGCATTCATACCTTAGTGGCGCTGCGTGACGAACTGGACTGATGTATTGGTTGTGGCTGCCTTTCGCGCAGTGATTGCCCGTTGCGTAACCCGGGCGACCGCTTAGGAGAAGAAGGTACCGGCGCACGCTTGc < 2:313731/143‑1 (MQ=255) tGGATCGGCGCATTCCTACCTTCGTGACGCTGCGTGACGAACTGGACTGATGTATTGGTTGTGGCTGCCTTTCGCGCAGTGATTGCCCGTTGCGTAACCCGGGCGACCGCTTAGGAGAAGAAGGTACCGGCGCACGCTTGCTg < 1:129853/143‑1 (MQ=255) gcgtCGGCGCATGCATACCTTAGTGGCGCTGCGTGACGAACTGGACTGATGTATTGGTTGTGGCTGCCTTTCGCGCAGTGATTGCCCGTTGCGTAACCCGGGCGACCGCTTAGGAGAAGAAGGTACCGGCGCACGCTTGCTgg < 2:405763/140‑1 (MQ=255) tCGGCGCATTCATACCTTAGTGGCGCTGCGTGACGAACTGGACTGATGTATTGGTTGTGGCTGCCTTTCGCGCAGTGATTGCCCGTTGCGTAACCCGGGCGACCGCTTAGGAGAAGAAGGTCCCCGCGCACGCTTGCCGCAAg > 2:652287/1‑143 (MQ=255) tCGGCGCATTCATACCTTAGTGGCGCTGCGTGACGAACGGGACTGATGTATTGGTTGTGGCTGCCTTTCGCGCAGTGATTGCCCGTTGCGAGACAGGGGCGACCGACTCGGAGAAGAAGGTACCGGCGCCAGCGTGCTGGAAg > 2:475975/1‑143 (MQ=255) cATTCATACCTTAGTGGCGCTGCGTGACGAACTGGACTGATGTATTGGTTGTGGCTGCCTTTCGCGCAGTGATTGCCCGTTGCGTAACCCGGGCGACCGCTTAGGAGAAGAAGGTACCGGCGCACGCTTGCTGGAAGATGAAc > 1:98688/1‑143 (MQ=255) cATTCATACCTTAGGGGCGCTGCGTGACGAACTGGACTGATGTATTGGTTGTGGCTGCCTTTCGCGCAGTGAGTGCCCGTTGCGTAACCCGGGCGACCGCTTAGGAGAAGAAGGTACCGGCGCACGCTTGCTGGAAGATGAAc < 1:214441/143‑1 (MQ=255) ttCATACCTTAGTGGCGCTGCGTGACGAACTGGACTGATGTATTGGTTGTGGCTGCCTTTCGCGCAGTGATTGCCCGTTGCGTAACCCGGGCGACCGCTTAGGAGAAGAAGGTACCGGCGCACGCTTGCTGGAAGATGAACaa > 1:258744/1‑143 (MQ=255) cTTAGTGGCGCTGCGTGACGAACTGGACTGATGTATTGGTTGTGGCTGCCTTTCGCGCAGTGATTGCCCGTTGCGTAACCCGGGCGACCGCTTAGGAGCCGAAGGTCCCGGCGCCGGCTTGCTGCGAGCTGAACACAAATata > 1:275168/1‑141 (MQ=255) gtgcgcTGCGTGACGGGCGGGACGGATGGATGGGTTGTGGCTGCCTTTCGCGCAGTGATTGCCCGTTGCGTAACCCGGGCGACCGCTTAGGAGAAGAAGGTACCGGCGCACGCTTGCTGGAAGATGAACAAAACTAAAGCGcc < 2:88768/141‑1 (MQ=255) gcgcTGCGTGACGAACTGGACTGATGTATTGGTTGTGGCTGCCTTTCGCGCAGTGATTGCCCGTTGCGTAACCCGGGCGACCGCTTAGGAGAAGAAGGTACCGGCGCACGCTTGCTGGAAGATGAACAAAACTAAAGCGCcac > 1:446670/1‑143 (MQ=255) tGGACTGATGTATTGGTTGTGGCTGCCTTTCGCGCAGTGAGGGCCCGTTGCGTAACCCGGGCGACCGCTTAGGAGAAGAAGGTACCGGCGCACGCTTGCTGGAAGATGAACAAAACTAAAGCGCCACAAGGGCGCTTTAgttt < 1:689504/143‑1 (MQ=255) ggACGGATGTATTGGTTGTGGCTGCCTTTGACGCAGTGATTGCCCGTTGCGTAACCCGGGCGACCGCTTAGGAGAAGAAGGTACCGGCGCACGCTTGCTGGAAGATGAACAAAACTAAAGCGCCACAAGGGCGCTTTAgtttg < 2:458711/143‑1 (MQ=255) ggcGGATGTACTGGTTGTGGCTGCTTTTCGGGGAGTGATTGACCGTTGTGTAACGCGTCCGACTGGTTAGGAGAAGAAGGTGTAGGCGCACGCTTGCTGGAAGATGAATAAAACTAAAGCGCCACAAGGGCGCTTTAgtttgt < 2:219493/141‑1 (MQ=255) | GACCATTGGTGAAGCGTTTGGCGTGTTGCCCGAAGGGCATACGTTAAGTGCGAAAGAGTGGAAACAGCTTTCGTCCCAATGGCGAGAAGAGTTGGATCGGCGCATTCATACCTTAGTGGCGCTGCGTGACGAACTGGACGGATGTATTGGTTGTGGCTGCCTTTCGCGCAGTGATTGCCCGTTGCGTAACCCGGGCGACCGCTTAGGAGAAGAAGGTACCGGCGCACGCTTGCTGGAAGATGAACAAAACTAAAGCGCCACAAGGGCGCTTTAGTTTGT > NC_000913/4277681‑4277959 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |