| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,815,859 | Δ82 bp | [rph]–[rph] | [rph], [rph] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3815859 | 3815940 | 82 | 34 [0] | [0] 34 | [rph]–[rph] | [rph],[rph] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3815858 | 0 (0.000) | 33 (1.330) | 31/264 | 0.0 | 100% | pseudogene (24/48 nt) | rph | ribonuclease PH (defective);enzyme; Degradation of RNA; RNase PH |
| ? | NC_000913 | 3815941 = | 0 (0.000) | pseudogene (609/669 nt) | rph | ribonuclease PH (defective);enzyme; Degradation of RNA; RNase PH | |||||
ACACCTGCTTGCTAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3815717‑3815858‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgccttctgcCGTCCCCTGCACTT‑CAATGATGCGCCCGTCTTCGGTCATCACTAC‑GTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCTACCA > NC_000913/3815941‑3816077 ACACCTGCTTGCTAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCC < 2:387610/143‑1 CCTGCTTGCTAAGCGCAAATTCAATAAACTGGCGCTGATATGGCTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGTCTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCCGTC < 1:359320/143‑1 CTGCTTGCTAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCCGTCC > 1:388122/1‑143 TGCTTGCAAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCCGTCCC < 1:476166/143‑1 CTAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCCGTCCCCTGCAC > 1:319114/1‑143 GCAAATTCAGTAAGCTGGCGCTGATATGGTTTCATGACTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCCGTCCCCTGCACTT‑CAAT < 2:327402/143‑1 GCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCCGTTTGCCAGCTCCGCCTTCTGCCGTCCCCTCCACTT‑CAAT > 1:128896/1‑143 AATTCAATAACCTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCCGTCCCCTGCACTT‑CAATGAT < 2:188483/143‑1 AATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCCGTCCCCTGCACTT‑CAATGAT < 2:131463/143‑1 TTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTACAAATCAGTTTGCCAGCGCCGCCTTCTGCCGTCCCCTGCACTTCCAATGATG > 2:18407/1‑143 TTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCCGGCCCCTGCACTT‑CAACAATGC > 2:139093/1‑143 AACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCCGTCCCCTGCACTT‑CAATGATGCGCCCGTC < 1:30554/143‑1 CTGGGGCGGATATTGTGTCGTGCCTTCCCTCCTCATGTTACTTTTCTACAGGAATAAAAAAGGCGGCTCATCAGTCGCCTTAAAAATCTGTTTGCCAGCGCCGCCTTCTGCCGTCCCCTGCACTT‑CAATGATGCGCCTGTCTT < 2:40451/143‑1 ccCTGCTATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCCGTCCCCTGCACTT‑CAATGATGCGCCCGTCTTCGGT < 2:201136/141‑1 GATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCCGTCCCCTGCACTT‑CAATGATGCGCCCGTCTTCGGTCATC > 1:100949/1‑143 CCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCCGTCCCCTGCACTT‑CAATGATGCGCCCGTCTTCGGTCATCACTAC‑GTTCATGTC < 1:42227/143‑1 CTCCGCATCTTACTTTTCGACAGACAAAAACAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCCGTCCCCTGCACTT‑CAATGATGCGCCCGTCTTCGGTCATCACTAC‑GTTCATGTCGGTCTC < 2:63386/143‑1 CTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCCGTCCCCTGCACTT‑CAATGATGCGCCCGTCTTCGGTCATCACTAC‑GTTCATGTCGGGCTCTGC > 1:111974/1‑143 TCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCCGTCCCCTGCACTT‑CAATGATGCGCGCGTCTTCGGTCAGCACTAC‑GTTCATGTAGGTCTCTGCa > 1:15572/1‑142 TTTTCTACAGAC‑AAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCCGTCCCCTGCACTT‑CAATGATGCGCCCGTCTTCGGTCATCACTAC‑GTTCATGTCGGTCTCTGCGGCAGAGCCTT > 1:319153/1‑143 cgtaTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCCGTCCCCTGCACTT‑CAATGATGCGCCCGTCTTCGGTCATCACTAC‑GTTCATGTCGGTCTCTGCGGCAGAGTCTT < 1:84593/139‑1 ACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCCGTCCCCTGCACTT‑CAATGATGCGCCCGTCTTCGGTCATCCCTAC‑GCCCATGTCGGTCTCTGCGGCAGAGGCTTCAACGTGTT > 2:468507/1‑143 ACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCCGTCCCCTGCACTT‑CAATGATGCGCCCGTCTTCGGTCATCACTAC‑GTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATT < 1:36170/143‑1 CAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCCGTCCCCTGCACTT‑CAATGATGCGCCCGTCTTCGGTCATCACTAC‑GTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTC < 1:397275/143‑1 AAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCCGTCCCCTGCACTT‑CAATGATGCGCCCGTCTTCAGTCATCACTAC‑GTTCATGTCGGTCTCTGCGGCAGAGTCATCAACGTATTCC > 1:370304/1‑143 AAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCCGTCCCCTGCACTT‑CAATGATGCGCCCGTCTTCGGTCATCACTAC‑GTCCATGTCGGTCTCTGCGCCCCAGTCTCCATCGTATTCCAGA > 2:362129/1‑143 ATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCCGTCCCCTGCACTT‑CAATGATGCGCCCGGCTAAGGTCAAC‑CAACAGTGTATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCTAGATCGCAAGCGGCTT > 1:111209/1‑143 TCAGTCGCCTTAAAAATCAGTGTGCCAGCGCCGCCTTCTGCCGTCCCCTGCACTT‑CAATGATGCGCCCGTCTGCGGGCAGCACTAC‑GTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTC < 1:278190/143‑1 CAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCCGTCCCCTGCACTT‑CAATGATGCGCCCGTCTTCGGTCATCACTAC‑CTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCG < 1:237689/143‑1 atAATCAGTTTGCCAGCGCCGCCTTCTGCCGTCCCCTGCACTT‑CAATGATGCGCCCGTCTTCGGTCATCACTAC‑GTTCATGTCGGTCTCTGCAGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAAT < 1:70853/141‑1 AAATCAGTTTGCCAGCGCCGGCTTATGCCGTCCCCTGCACTT‑CAATGATGCGCCCGTCTTCGGTCATCACGAC‑GGTCATGCCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCCGATCGCAAACCGCTTCGCCGTTCACAATT < 1:313482/143‑1 CAGTTTGCCAGCGCCGCCTTCTGCCGTCCCCTGCACTT‑CAATGATGCGCCCGTCTTCGGTCATAACTAC‑AATCATGTAGGTCTCTGCGACAGAGCCTTCAACGTATTCCAGATAGCAAACCGCTTCGCCGTTCACAATTCCaa > 1:476560/1‑141 CGCCGCCTTCTCCCGTCCCCTGCACTT‑CAATGATGCGCCCGTCTTCGGTCATCACTAC‑GTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAACCCGCTTCGCCATTCACAATTCCGACAGAAACTGCG < 2:355770/143‑1 TTCTGCCGTCCCCTGCACTT‑CAATGATGCGCCCGTCTTCGGTCATCACTAC‑GCTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCTACCA > 1:260947/1‑143 ACACCTGCTTGCTAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3815717‑3815858‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgccttctgcCGTCCCCTGCACTT‑CAATGATGCGCCCGTCTTCGGTCATCACTAC‑GTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCTACCA > NC_000913/3815941‑3816077 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |