New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 258675	NA (NA)	28 (1.040)	25/284	0.1	100%	noncoding (1/768 nt)	IS1	repeat region
	?	NC_000913	1309435 =	0 (0.000)					coding (835/1254 nt)	kch	voltage‑gated potassium channel

TGCATCGTTATCACTCAGCGCCAGAATGGCCCGGCAACGATCGATTCCCGCTTTCTTTAATACAGAACTGTCATTACTGTCACCGGGGATAACATCAGCATTATCGCCTAAGCGTTGCTCAAGTTGCTTGATATCATCTTCAGGCAAGTTGCTGATAACCGTTACGTTTTGTCCGCGTTGATTCAGTTGCAGGATCGTATTGATGGCGAGAATCGAATGTCCGCAAACAATAAAATGATCTTTACGATGCATTGTATGATTGTTTCCTTTTACAAGT  >  NC_000913/1309301‑1309577                                                                                                                                       |                                                                                                                                               gtccggcgttgcttttgtcgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCATCTTCAg                                                                                                                                        <  2:116644‑M2/9‑1 (MQ=255) gtccggcggtgcttttgccgttacgcaccaccccgtcagtagatgaacaggagggacagctgatagaaacagaagcgactggagcccctcaaaaacaccataatacactaaatcagtacattggcagcatcccccatctcccg                                                                                                                                        >  2:192483‑M2/135‑139 (MQ=255)          tgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCATCTTCAGGCAAGTTGc                                                                                                                               >  2:370481‑M2/126‑143 (MQ=255)                   cgttacgcaccaccccggcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCATCTTCAGGCAAGTTGCTGATAACCg                                                                                                                      <  2:399073‑M2/27‑1 (MQ=255)                              accccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCATCTTCAGGCAAGTTGCTGATAACCGTTACGTTTTGt                                                                                                           <  2:309168‑M2/38‑1 (MQ=255)                              accccgtcagtagcagaagaggattgacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCATCTTCAGGCAAGTTGCTGATAACCGTTACGTTTTGt                                                                                                           <  2:76049‑M2/38‑1 (MQ=255)                                   gtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCATCTTCAGGCAAGTTGCTGATAACCGTTACGTTTTGTCcgcg                                                                                                      >  1:398561‑M2/101‑143 (MQ=255)                                    gcagtagctgaacaggagcgcccgctgacagcagcagaagccactcgagcacctcaaaaacaccatcatacactagatcagtaagttggcagcatcaccGTTCTTCAGGCAAGTTGCTGATAACCGTTACGTTTTGTCCGCGt                                                                                                     <  2:265560‑M2/44‑1 (MQ=255)                                           ctgaacaggagggacagctgatagaatcagaagccactggagcacctcaaaaaccccatcatacactaaatcagtaagttggcagcatcaccCATCTTCAGGCAAGTTGCTGATAACCGTTACGTTTTGTCCGCGTTGATTCa                                                                                              <  2:200735‑M2/51‑1 (MQ=255)                                            tgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCATCTTCAGGCAAGTTGCTGATAACCGTTACGTTTTGTCCGCGTTGATTCAg                                                                                             <  1:54054‑M2/52‑1 (MQ=255)                                            agaacaggatggaaagatgatagaaacagaagccaatggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCATCTTCAGGCAAGTTGCTGATAACCGTTACGTTTTGTCCGCGTTGATTCAg                                                                                             <  2:24515‑M2/52‑1 (MQ=255)                                                      cgacagctgatagaaacagaagcccctggatcacctcaaaaacaccaccatacactaaatcagtaagttggcagcatcaccCATCTTCAGGCAAGTTGCTGATAACCGTTACGTTTTGTCCGCGTTGATTCAGTTGCAGGATc                                                                                   <  1:302519‑M2/62‑1 (MQ=255)                                                         gagctgatggaaacagaggcgagtggagcacctcaaagacaccatcagacacgaaatcagtaagtgggcagcatcaccCATCTTCAGGCAAGTTGCTGATAACCGTTACGTTTTGTCCGCGTTGATTCAGTTGCAGGATCGTa                                                                                <  1:98913‑M2/65‑1 (MQ=255)                                                           cctgatacaaacaaaagcccctgtagcacctcaaaaacacgatcatacactaaatcagtaagtgggcagcatcaccCCTCTTCAGGCAAGTTGCTGATAACCGTTACGTTTTGGCCGCGTTGATTCAGTTGCAGGATCGTAtt                                                                              <  2:289594‑M2/67‑1 (MQ=255)                                                            ctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCATCTTCAGGCAAGTTGCTGATAACCGTTACGTTTTGTCCGCGTTGATTCAGTTGCAGGATCGTATTg                                                                             >  1:436145‑M2/76‑143 (MQ=255)                                                             tgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCATCTTCAGGCAAGTTGCTGATAACCGTTACGTTTTGTCCGCGTTGATTCAGTTGCAGGGTCATATTGa                                                                            >  1:57838‑M2/75‑143 (MQ=255)                                                                 agaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCATCTTCAGGCAAGTTGCTGATAACCGTTACGTTTTGTCCGCGTTGATTCAGTTGCAGGATCGTATTGATGGc                                                                        <  1:114411‑M2/73‑1 (MQ=255)                                                                   aaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCATCTTCAGGCAGGTTGCTGATAACGGTTACGTTTTGTCCGCGTTGATTCAGTTGCAGGATCGTATTGATGGCga                                                                      <  1:132696‑M2/75‑1 (MQ=255)                                                                     acagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCATCTTCAGGCAAGTTGCTGATAACCGTTACGTTTTGTCCGCGTTGATTCAGTTGCAGGATCGTATTGATGGCgaga                                                                    <  1:347535‑M2/77‑1 (MQ=255)                                                                         aagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCATCTTCAGGCAAGTTGCTGATAACCGTTACGTTTTGTCCGCGTTGATTCAGTTGCAGGATCGTATTGATGGCGAGAATCg                                                                <  1:415316‑M2/81‑1 (MQ=255)                                                                              actggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCATCTTCAGGCAAGTTGCTGATAACCGTTACGTTTTGTCCGCGTTGATTCAGTTGCAGGATCGTATTGATGGCGAGAATCGAATGt                                                           <  1:41320‑M2/86‑1 (MQ=255)                                                                                                   catcatacactaaatcagtaagttggcagcatcaccCATCTTCAGGCAAGTTGCTGATAACCGTTACGTTTTGTCCGCGTTGATTCAGTTGCAGGATCGTATTGATGGCGAGAATCGAATGTCCGCAAACAATAAAATGATCt                                      <  1:370481‑M2/107‑1 (MQ=255)                                                                                                   catcatacactaaatcagtaagttggcagcatcaccCATCTTCAGGCAAGTTGCTGATAACCGTTACGTCTTGTCCGCGTTGATTCAGTTGCAGGATCGTATTGCTGGCGAGAATCGCATGTCCGCCAGCAATAAACTGATCt                                      >  2:113267‑M2/37‑143 (MQ=255)                                                                                                             taaatcagtaagttggcagcatcaccCATCTTCAGGCAAGTTGCTGATAACCGTTACGTTTTGTCCGCGTTGATTCAGTTGCAGGATCGTATTGATGGCGAGAATCGAATGTCCGCCAACAATAAAATGATCTTTACGATGCa                            >  1:259056‑M2/27‑143 (MQ=255)                                                                                                              aaatcagtaagttggcagcatcaccCATCTTCAGGCAAGTTGCTGATAACCGTTACGTTTTGAACGCGTTGATTCAGTTGCAGGATGGTATTGATGGCGAGAATCGAATGTCCGCAAACAATAAAATGATCTATACGGTGCAt                           >  1:197444‑M2/26‑143 (MQ=255)                                                                                                                     taagttggcagcatcaccCATCTTCAGGCAAGTTGCTGATAACCGTTACGTTTTGTCCGCGTTGATTCAGTTGCAGGATCGTATTGATGGCGAGCATCGCATGGCCGCAAACAATAAAATGATCTTTAACATGCATTGTCtgg                    >  2:269386‑M2/19‑142 (MQ=255)                                                                                                                     taagttggcagcatcaccCATCTTCAGGCAAGTTGCTGATAACCGTTACGTTTTGTCCGCGTTGATTCAGTTGCAGGATCGTATTGATGGCGAGAATCGAATGTCCGCAAACAATAAAATGATCTTTACGATGCATTGTATGa                    >  1:40939‑M2/19‑143 (MQ=255)                                                                                                                                 atcaccCATCTTCAGGCAAGTTGCTGATAACCGTTACGTTTTGTCCGCGTTGATTCAGTTGCAGGATCGTATTGATGGCGAGAATCGAATGTCCGCAAACAATAAAATGATCTTTACGATGCATTGTATGATTGTTTCCtttt        <  1:41662‑M2/137‑1 (MQ=255)                                                                                                                                       catcTTCAGGCAAGTTACTGGAGATCGTTACGTACATTTCGCGTTTATTCAGTTGCAGGATCGTATTGATGGCGAGAATCGACTGTCCGCAAACAATACAATGATCTTTACGATGCATTGTATGATTGTTCCCTTTTACAAGt  >  2:105103/1‑143 (MQ=255)                                                                                                                                       |                                                                                                                                               TGCATCGTTATCACTCAGCGCCAGAATGGCCCGGCAACGATCGATTCCCGCTTTCTTTAATACAGAACTGTCATTACTGTCACCGGGGATAACATCAGCATTATCGCCTAAGCGTTGCTCAAGTTGCTTGATATCATCTTCAGGCAAGTTGCTGATAACCGTTACGTTTTGTCCGCGTTGATTCAGTTGCAGGATCGTATTGATGGCGAGAATCGAATGTCCGCAAACAATAAAATGATCTTTACGATGCATTGTATGATTGTTTCCTTTTACAAGT  >  NC_000913/1309301‑1309577

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.